Wall clock time and date at job start Wed Apr 1 2020 02:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35820 * 117.00181 * 2 1 4 4 C 1.38884 * 119.93397 * 179.97438 * 3 2 1 5 5 C 1.37837 * 120.07063 * 180.02562 * 4 3 2 6 6 C 1.39465 * 119.92992 * 359.97438 * 5 4 3 7 7 C 1.48212 * 120.06850 * 179.72586 * 6 5 4 8 8 C 1.39819 * 120.51822 * 179.72745 * 7 6 5 9 9 C 1.38292 * 118.42416 * 179.73361 * 8 7 6 10 10 N 1.32397 * 119.28287 * 0.53832 * 9 8 7 11 11 C 1.32420 * 120.99843 * 359.71757 * 10 9 8 12 12 N 1.38945 * 119.14541 * 180.02562 * 11 10 9 13 13 C 1.34786 * 119.99526 * 359.97438 * 12 11 10 14 14 O 1.21263 * 119.99905 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99974 * 179.97438 * 13 12 11 16 16 S 1.80999 * 109.47057 * 179.97438 * 15 13 12 17 17 C 1.76202 * 99.99690 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00170 * 0.02562 * 17 16 15 19 19 C 1.38802 * 119.99533 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00162 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99731 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47159 * 90.00256 * 21 19 17 23 23 H 1.48492 * 109.47137 * 210.00340 * 21 19 17 24 24 H 1.48503 * 109.46965 * 330.00274 * 21 19 17 25 25 N 1.32295 * 121.72041 * 0.02562 * 11 10 9 26 26 C 1.39465 * 119.86225 * 0.02562 * 6 5 4 27 27 C 1.37833 * 119.93044 * 359.97438 * 26 6 5 28 28 H 1.08998 * 109.46872 * 60.00100 * 1 2 3 29 29 H 1.08999 * 109.47038 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47191 * 300.00679 * 1 2 3 31 31 H 1.08002 * 119.96426 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.03614 * 180.02562 * 5 4 3 33 33 H 1.08008 * 120.79051 * 359.97404 * 8 7 6 34 34 H 1.08006 * 120.35707 * 180.24186 * 9 8 7 35 35 H 0.96992 * 120.00420 * 179.97438 * 12 11 10 36 36 H 1.08996 * 109.47598 * 300.00891 * 15 13 12 37 37 H 1.09007 * 109.46700 * 60.00437 * 15 13 12 38 38 H 0.97001 * 119.99468 * 179.97438 * 20 19 17 39 39 H 1.08007 * 120.03416 * 179.97438 * 26 6 5 40 40 H 1.08008 * 119.96595 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2101 0.0000 4 6 3.4327 1.2812 0.0005 5 6 4.0614 2.5078 0.0011 6 6 3.3032 3.6784 0.0005 7 6 3.9761 4.9989 0.0072 8 6 3.2252 6.1784 0.0010 9 6 3.8976 7.3868 0.0133 10 7 5.2215 7.3912 0.0196 11 6 5.9073 6.2584 0.0199 12 7 7.2958 6.3079 0.0272 13 6 7.9276 7.4986 0.0333 14 8 7.2841 8.5264 0.0330 15 6 9.4336 7.5524 0.0418 16 16 9.9755 9.2794 0.0478 17 6 11.7228 9.0516 0.0564 18 1 12.1374 8.0544 0.0562 19 6 12.5662 10.1540 0.0623 20 7 12.0608 11.3694 0.0619 21 14 14.4186 9.9126 0.0706 22 1 14.9161 9.8511 -1.3273 23 1 15.0627 11.0497 0.7757 24 1 14.7494 8.6451 0.7700 25 7 5.3049 5.0806 0.0135 26 6 1.9106 3.6037 0.0000 27 6 1.2878 2.3741 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 4.0193 0.3743 0.0005 32 1 5.1400 2.5624 0.0011 33 1 2.1457 6.1465 -0.0092 34 1 3.3486 8.3169 0.0129 35 1 7.8105 5.4858 0.0279 36 1 9.8102 7.0498 0.9327 37 1 9.8200 7.0539 -0.8473 38 1 12.6504 12.1397 0.0664 39 1 1.3207 4.5085 0.0000 40 1 0.2093 2.3156 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001461484400.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:57 Heat of formation + Delta-G solvation = 25.524166 kcal Electronic energy + Delta-G solvation = -25160.752105 eV Core-core repulsion = 21261.410296 eV Total energy + Delta-G solvation = -3899.341809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.35660 -40.48079 -39.14055 -37.85104 -34.87593 -33.97109 -32.45001 -32.10160 -31.27936 -29.99116 -29.00456 -27.78944 -25.53947 -24.82335 -24.23400 -22.60643 -22.13365 -20.39548 -18.77275 -18.58345 -17.80628 -17.34081 -16.49540 -16.24311 -16.14147 -15.80557 -15.74131 -15.71503 -14.81959 -14.55386 -14.47669 -14.33040 -14.13121 -13.95295 -13.62954 -13.34497 -13.25376 -12.66629 -12.58795 -12.27950 -12.27071 -11.81233 -11.49002 -11.08357 -11.05607 -10.97293 -10.89265 -10.78504 -10.71632 -9.86013 -9.66167 -9.46587 -9.08543 -8.95894 -8.88264 -8.31555 -8.29021 -6.53870 -6.23743 -3.95162 0.26747 0.92984 0.94118 1.57051 2.48495 2.76092 2.91667 3.21210 3.22153 3.29286 3.34159 3.45781 3.81271 3.97338 4.17255 4.22704 4.27773 4.40915 4.50307 4.61279 4.63606 4.84663 4.87458 4.96607 5.05715 5.07185 5.11774 5.13282 5.24456 5.39761 5.56583 5.58197 5.79521 5.80420 5.86621 6.00383 6.06478 6.09742 6.27281 6.51522 6.87435 7.00023 7.14102 7.58065 8.17905 8.33214 8.44260 9.21688 10.83656 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.029902 B = 0.001713 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.160780 B =16342.880675 C =17258.570748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.143 3.857 4 C -0.159 4.159 5 C -0.031 4.031 6 C -0.094 4.094 7 C 0.252 3.748 8 C -0.268 4.268 9 C 0.184 3.816 10 N -0.505 5.505 11 C 0.553 3.447 12 N -0.644 5.644 13 C 0.524 3.476 14 O -0.441 6.441 15 C -0.151 4.151 16 S -0.054 6.054 17 C -0.537 4.537 18 H 0.074 0.926 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.920 3.080 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 N -0.553 5.553 26 C -0.048 4.048 27 C -0.215 4.215 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.136 0.864 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.172 0.828 35 H 0.421 0.579 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.269 0.731 39 H 0.133 0.867 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.972 -21.923 -0.153 33.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.097 3.903 4 C -0.177 4.177 5 C -0.050 4.050 6 C -0.096 4.096 7 C 0.106 3.894 8 C -0.292 4.292 9 C 0.017 3.983 10 N -0.225 5.225 11 C 0.197 3.803 12 N -0.295 5.295 13 C 0.308 3.692 14 O -0.305 6.305 15 C -0.301 4.301 16 S 0.173 5.827 17 C -0.685 4.685 18 H 0.092 0.908 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.746 3.254 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.197 1.197 25 N -0.275 5.275 26 C -0.067 4.067 27 C -0.234 4.234 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.154 0.846 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.189 0.811 35 H 0.259 0.741 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.079 0.921 39 H 0.151 0.849 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -24.755 -20.047 -0.144 31.855 hybrid contribution 0.970 -1.670 -0.008 1.931 sum -23.785 -21.717 -0.152 32.208 Atomic orbital electron populations 1.23111 0.78078 1.04199 1.01581 1.86076 1.21678 1.26955 1.88142 1.19263 0.92465 0.84203 0.94368 1.20454 0.91257 0.98870 1.07165 1.21193 1.00984 0.90027 0.92757 1.18318 0.92601 0.90689 1.07954 1.19669 0.87661 0.92697 0.89388 1.22621 1.02416 0.93818 1.10309 1.23165 0.89137 0.98155 0.87865 1.68568 1.08498 1.28481 1.16988 1.19449 0.86858 0.84533 0.89440 1.43568 1.01721 1.11674 1.72531 1.20679 0.90175 0.82214 0.76112 1.90822 1.66655 1.31953 1.41074 1.23551 0.91694 1.09336 1.05540 1.85449 1.04990 0.95528 1.96760 1.22863 0.90862 0.95609 1.59203 0.90756 1.24992 0.99674 0.94408 0.94438 1.70015 1.35731 0.97773 1.46687 0.86152 0.82868 0.78023 0.78368 1.20244 1.20736 1.19659 1.67698 1.11041 1.27391 1.21348 1.21010 0.93061 0.97610 0.95038 1.21137 1.00243 0.91917 1.10057 0.92401 0.88073 0.92406 0.84607 0.83756 0.83664 0.81084 0.74139 0.88611 0.88620 0.92123 0.84876 0.84900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.09 9.81 101.05 0.99 1.08 16 2 O -0.32 -2.38 10.49 -19.18 -0.20 -2.58 16 3 C 0.14 1.16 6.69 -39.10 -0.26 0.90 16 4 C -0.16 -1.34 9.97 -39.49 -0.39 -1.73 16 5 C -0.03 -0.29 9.58 -39.27 -0.38 -0.66 16 6 C -0.09 -0.92 5.88 -104.88 -0.62 -1.53 16 7 C 0.25 2.94 6.76 -82.62 -0.56 2.39 16 8 C -0.27 -2.70 9.52 -38.97 -0.37 -3.07 16 9 C 0.18 2.25 11.29 -17.29 -0.20 2.06 16 10 N -0.51 -8.52 7.86 -13.91 -0.11 -8.62 16 11 C 0.55 8.81 8.38 -322.37 -2.70 6.11 16 12 N -0.64 -9.92 5.40 -13.09 -0.07 -9.99 16 13 C 0.52 10.06 7.81 -10.98 -0.09 9.97 16 14 O -0.44 -10.15 14.06 5.57 0.08 -10.07 16 15 C -0.15 -2.98 6.16 36.00 0.22 -2.76 16 16 S -0.05 -1.44 20.57 -107.50 -2.21 -3.65 16 17 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -25.97 13.22 55.49 0.73 -25.23 16 21 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 N -0.55 -7.58 9.60 -10.37 -0.10 -7.68 16 26 C -0.05 -0.36 9.43 -39.27 -0.37 -0.73 16 27 C -0.21 -1.47 9.02 -39.49 -0.36 -1.82 16 28 H 0.06 0.16 7.65 -51.93 -0.40 -0.24 16 29 H 0.10 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.16 7.66 -51.93 -0.40 -0.24 16 31 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 32 H 0.14 1.33 7.57 -52.49 -0.40 0.93 16 33 H 0.15 0.91 6.31 -52.48 -0.33 0.58 16 34 H 0.17 1.54 8.06 -52.48 -0.42 1.12 16 35 H 0.42 4.99 8.81 -40.82 -0.36 4.63 16 36 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 37 H 0.10 1.72 8.14 -51.91 -0.42 1.29 16 38 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.13 0.67 6.26 -52.48 -0.33 0.35 16 40 H 0.13 0.58 6.28 -52.48 -0.33 0.25 16 LS Contribution 364.57 15.07 5.49 5.49 Total: -1.00 -36.84 364.57 -10.49 -47.32 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -4.20 Total: 1.39 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -4.88 Total: -2.61 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: 0.45 Total: -51.53 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.12 Total: -12.66 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -2.21 Total: -3.65 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.84 -10.49 -47.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461484400.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.847 kcal (2) G-P(sol) polarization free energy of solvation -36.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds