Wall clock time and date at job start Wed Apr 1 2020 02:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35820 * 117.00181 * 2 1 4 4 C 1.38884 * 119.93397 * 179.97438 * 3 2 1 5 5 C 1.37837 * 120.07063 * 180.02562 * 4 3 2 6 6 C 1.39465 * 119.92992 * 359.97438 * 5 4 3 7 7 C 1.48212 * 120.06850 * 179.72586 * 6 5 4 8 8 C 1.39819 * 120.51822 * 179.72745 * 7 6 5 9 9 C 1.38292 * 118.42416 * 179.73361 * 8 7 6 10 10 N 1.32397 * 119.28287 * 0.53832 * 9 8 7 11 11 C 1.32420 * 120.99843 * 359.71757 * 10 9 8 12 12 N 1.38945 * 119.14541 * 180.02562 * 11 10 9 13 13 C 1.34786 * 119.99526 * 359.97438 * 12 11 10 14 14 O 1.21263 * 119.99905 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99974 * 179.97438 * 13 12 11 16 16 S 1.80999 * 109.47057 * 179.97438 * 15 13 12 17 17 C 1.76202 * 99.99690 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00170 * 0.02562 * 17 16 15 19 19 C 1.38802 * 119.99533 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00162 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99731 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47159 * 90.00256 * 21 19 17 23 23 H 1.48492 * 109.47137 * 210.00340 * 21 19 17 24 24 H 1.48503 * 109.46965 * 330.00274 * 21 19 17 25 25 N 1.32295 * 121.72041 * 0.02562 * 11 10 9 26 26 C 1.39465 * 119.86225 * 0.02562 * 6 5 4 27 27 C 1.37833 * 119.93044 * 359.97438 * 26 6 5 28 28 H 1.08998 * 109.46872 * 60.00100 * 1 2 3 29 29 H 1.08999 * 109.47038 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47191 * 300.00679 * 1 2 3 31 31 H 1.08002 * 119.96426 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.03614 * 180.02562 * 5 4 3 33 33 H 1.08008 * 120.79051 * 359.97404 * 8 7 6 34 34 H 1.08006 * 120.35707 * 180.24186 * 9 8 7 35 35 H 0.96992 * 120.00420 * 179.97438 * 12 11 10 36 36 H 1.08996 * 109.47598 * 300.00891 * 15 13 12 37 37 H 1.09007 * 109.46700 * 60.00437 * 15 13 12 38 38 H 0.97001 * 119.99468 * 179.97438 * 20 19 17 39 39 H 1.08007 * 120.03416 * 179.97438 * 26 6 5 40 40 H 1.08008 * 119.96595 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2101 0.0000 4 6 3.4327 1.2812 0.0005 5 6 4.0614 2.5078 0.0011 6 6 3.3032 3.6784 0.0005 7 6 3.9761 4.9989 0.0072 8 6 3.2252 6.1784 0.0010 9 6 3.8976 7.3868 0.0133 10 7 5.2215 7.3912 0.0196 11 6 5.9073 6.2584 0.0199 12 7 7.2958 6.3079 0.0272 13 6 7.9276 7.4986 0.0333 14 8 7.2841 8.5264 0.0330 15 6 9.4336 7.5524 0.0418 16 16 9.9755 9.2794 0.0478 17 6 11.7228 9.0516 0.0564 18 1 12.1374 8.0544 0.0562 19 6 12.5662 10.1540 0.0623 20 7 12.0608 11.3694 0.0619 21 14 14.4186 9.9126 0.0706 22 1 14.9161 9.8511 -1.3273 23 1 15.0627 11.0497 0.7757 24 1 14.7494 8.6451 0.7700 25 7 5.3049 5.0806 0.0135 26 6 1.9106 3.6037 0.0000 27 6 1.2878 2.3741 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 4.0193 0.3743 0.0005 32 1 5.1400 2.5624 0.0011 33 1 2.1457 6.1465 -0.0092 34 1 3.3486 8.3169 0.0129 35 1 7.8105 5.4858 0.0279 36 1 9.8102 7.0498 0.9327 37 1 9.8200 7.0539 -0.8473 38 1 12.6504 12.1397 0.0664 39 1 1.3207 4.5085 0.0000 40 1 0.2093 2.3156 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461484400.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:56 Heat of formation + Delta-G solvation = 2.603548 kcal Electronic energy + Delta-G solvation = -25161.746017 eV Core-core repulsion = 21261.410296 eV Total energy + Delta-G solvation = -3900.335721 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.37720 -41.11207 -40.42580 -38.49306 -36.15409 -34.91298 -34.58313 -33.01499 -32.03523 -30.95472 -30.19145 -28.20929 -27.68187 -25.68774 -25.19138 -23.39008 -22.90947 -21.57970 -20.08995 -19.42843 -19.12589 -18.55321 -17.47722 -17.09312 -17.03744 -16.87471 -16.72385 -16.65924 -16.46202 -16.02116 -15.74525 -15.19568 -15.08327 -14.86308 -14.60756 -14.51112 -14.20556 -13.95556 -13.60943 -13.17938 -13.16824 -12.89074 -12.78357 -12.63148 -12.47079 -12.25989 -12.04855 -11.75884 -11.70745 -11.56527 -11.13940 -11.05041 -10.30412 -10.07394 -10.05060 -9.90739 -9.01817 -8.67633 -8.34678 -6.13032 -0.51783 -0.07236 0.36026 0.78207 1.07769 1.40093 1.43405 1.52190 1.54475 1.78188 2.26379 2.32905 2.61305 2.94954 2.99907 3.03479 3.10574 3.41296 3.49573 3.78203 3.91713 3.94124 4.12222 4.20034 4.24493 4.33910 4.38885 4.43939 4.46001 4.48301 4.58849 4.66325 4.79023 4.95807 5.05647 5.17577 5.27019 5.39528 5.42947 5.52869 5.68211 5.94071 6.08614 6.20361 6.38547 6.93492 7.06919 7.24010 8.74521 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.029902 B = 0.001713 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.160780 B =16342.880675 C =17258.570748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.333 6.333 3 C 0.140 3.860 4 C -0.172 4.172 5 C -0.040 4.040 6 C -0.115 4.115 7 C 0.239 3.761 8 C -0.243 4.243 9 C 0.168 3.832 10 N -0.554 5.554 11 C 0.529 3.471 12 N -0.630 5.630 13 C 0.532 3.468 14 O -0.487 6.487 15 C -0.125 4.125 16 S -0.141 6.141 17 C -0.548 4.548 18 H 0.086 0.914 19 C 0.015 3.985 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.258 1.258 25 N -0.556 5.556 26 C -0.040 4.040 27 C -0.211 4.211 28 H 0.070 0.930 29 H 0.116 0.884 30 H 0.069 0.931 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.191 0.809 34 H 0.198 0.802 35 H 0.436 0.564 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.271 0.729 39 H 0.162 0.838 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.786 -24.289 -0.163 36.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.246 6.246 3 C 0.093 3.907 4 C -0.190 4.190 5 C -0.060 4.060 6 C -0.117 4.117 7 C 0.094 3.906 8 C -0.266 4.266 9 C 0.003 3.997 10 N -0.275 5.275 11 C 0.172 3.828 12 N -0.282 5.282 13 C 0.317 3.683 14 O -0.355 6.355 15 C -0.276 4.276 16 S 0.086 5.914 17 C -0.695 4.695 18 H 0.104 0.896 19 C -0.190 4.190 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.182 1.182 25 N -0.277 5.277 26 C -0.059 4.059 27 C -0.230 4.230 28 H 0.088 0.912 29 H 0.135 0.865 30 H 0.088 0.912 31 H 0.159 0.841 32 H 0.154 0.846 33 H 0.208 0.792 34 H 0.215 0.785 35 H 0.276 0.724 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.080 0.920 39 H 0.180 0.820 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -26.622 -22.479 -0.155 34.843 hybrid contribution 1.234 -1.165 -0.007 1.698 sum -25.388 -23.644 -0.163 34.693 Atomic orbital electron populations 1.23421 0.76035 1.05765 1.02725 1.86062 1.23855 1.26838 1.87873 1.19451 0.92498 0.85058 0.93669 1.20556 0.92042 0.98760 1.07659 1.21186 1.00796 0.90601 0.93377 1.18382 0.93712 0.89575 1.10013 1.20209 0.87164 0.94361 0.88829 1.23037 1.04404 0.92150 1.07007 1.23713 0.88002 1.00288 0.87687 1.68469 1.10860 1.29616 1.18537 1.19460 0.86723 0.85213 0.91378 1.43102 1.02250 1.10972 1.71924 1.20423 0.89726 0.82661 0.75540 1.90803 1.67353 1.33747 1.43614 1.23349 0.92432 1.04196 1.07655 1.85612 1.06051 1.02645 1.97085 1.23221 0.91021 0.96320 1.58980 0.89639 1.26114 1.05306 0.93914 0.93685 1.70179 1.37759 0.98853 1.47934 0.84950 0.75799 0.78437 0.78771 1.19336 1.20346 1.18176 1.67704 1.12390 1.26236 1.21400 1.21310 0.92071 0.99053 0.93470 1.21456 1.01672 0.91065 1.08792 0.91187 0.86534 0.91198 0.84108 0.84628 0.79205 0.78516 0.72391 0.86373 0.86363 0.91969 0.82023 0.81983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.81 113.37 1.11 1.18 16 2 O -0.33 -4.33 10.49 -91.53 -0.96 -5.29 16 3 C 0.14 1.98 6.69 22.58 0.15 2.13 16 4 C -0.17 -2.75 9.97 22.33 0.22 -2.53 16 5 C -0.04 -0.73 9.58 22.47 0.22 -0.52 16 6 C -0.12 -2.04 5.88 -20.03 -0.12 -2.15 16 7 C 0.24 5.26 6.76 41.98 0.28 5.55 16 8 C -0.24 -4.30 9.52 22.67 0.22 -4.08 16 9 C 0.17 3.95 11.29 84.62 0.96 4.90 16 10 N -0.55 -18.95 7.86 -197.91 -1.55 -20.50 16 11 C 0.53 17.04 8.38 261.33 2.19 19.23 16 12 N -0.63 -19.63 5.40 -313.71 -1.69 -21.33 16 13 C 0.53 20.87 7.81 87.65 0.68 21.55 16 14 O -0.49 -23.40 14.06 -2.98 -0.04 -23.44 16 15 C -0.13 -4.97 6.16 71.24 0.44 -4.53 16 16 S -0.14 -7.80 20.57 -56.49 -1.16 -8.96 16 17 C -0.55 -31.10 9.50 67.95 0.65 -30.45 16 18 H 0.09 4.48 7.80 -2.91 -0.02 4.46 16 19 C 0.01 0.84 5.49 84.86 0.47 1.30 16 20 N -0.91 -55.90 13.22 21.65 0.29 -55.61 16 21 Si 1.00 43.56 29.55 68.60 2.03 45.59 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 24 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 25 N -0.56 -15.13 9.60 -186.73 -1.79 -16.93 16 26 C -0.04 -0.46 9.43 22.47 0.21 -0.24 16 27 C -0.21 -2.16 9.02 22.33 0.20 -1.96 16 28 H 0.07 0.15 7.65 -2.39 -0.02 0.13 16 29 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.07 0.15 7.66 -2.39 -0.02 0.13 16 31 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.14 2.57 7.57 -2.91 -0.02 2.55 16 33 H 0.19 1.49 6.31 -2.91 -0.02 1.47 16 34 H 0.20 3.27 8.06 -2.91 -0.02 3.25 16 35 H 0.44 10.24 8.81 -92.71 -0.82 9.43 16 36 H 0.12 4.16 8.14 -2.40 -0.02 4.14 16 37 H 0.12 4.15 8.14 -2.39 -0.02 4.14 16 38 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 39 H 0.16 0.81 6.26 -2.91 -0.02 0.79 16 40 H 0.16 0.66 6.28 -2.91 -0.02 0.64 16 Total: -1.00 -84.06 364.57 3.27 -80.79 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.29 Total: 16.31 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 7.88 Total: 9.36 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -4.76 Total: -114.37 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -1.00 Total: -28.73 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -7.80 SS G_CDS: -1.16 Total: -8.96 kcal Total: -84.06 3.27 -80.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461484400.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.393 kcal (2) G-P(sol) polarization free energy of solvation -84.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds