Wall clock time and date at job start Wed Apr 1 2020 02:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00188 * 2 1 4 4 C 1.50697 * 109.47174 * 180.02562 * 3 2 1 5 5 C 1.38635 * 120.40922 * 359.97438 * 4 3 2 6 6 C 1.38586 * 118.54143 * 180.29936 * 5 4 3 7 7 N 1.32288 * 119.18958 * 359.42077 * 6 5 4 8 8 C 1.32416 * 120.74652 * 0.61391 * 7 6 5 9 9 N 1.38842 * 119.20451 * 179.68314 * 8 7 6 10 10 C 1.34768 * 119.99983 * 359.97438 * 9 8 7 11 11 O 1.21536 * 120.00491 * 359.97438 * 10 9 8 12 12 C 1.47813 * 119.99851 * 180.02562 * 10 9 8 13 13 C 1.39698 * 120.10499 * 359.72450 * 12 10 9 14 14 C 1.38028 * 120.03739 * 179.77096 * 13 12 10 15 15 C 1.38184 * 120.24874 * 0.50497 * 14 13 12 16 16 C 1.39183 * 120.20181 * 359.74288 * 15 14 13 17 17 S 1.76206 * 120.01525 * 179.97438 * 16 15 14 18 18 C 1.76195 * 100.00220 * 265.53106 * 17 16 15 19 19 H 1.08007 * 119.99637 * 5.12292 * 18 17 16 20 20 C 1.38719 * 120.00330 * 185.12232 * 18 17 16 21 21 N 1.31626 * 120.00512 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00088 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47572 * 89.99872 * 22 20 18 24 24 H 1.48501 * 109.47681 * 210.00344 * 22 20 18 25 25 H 1.48510 * 109.46973 * 330.00049 * 22 20 18 26 26 C 1.38865 * 119.96514 * 0.02562 * 16 15 14 27 27 N 1.32260 * 120.40749 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.47246 * 59.99857 * 1 2 3 29 29 H 1.08997 * 109.47118 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46778 * 300.00206 * 1 2 3 31 31 H 1.09000 * 109.47319 * 59.99754 * 3 2 1 32 32 H 1.09003 * 109.46826 * 299.99776 * 3 2 1 33 33 H 1.08007 * 120.72672 * 0.02562 * 5 4 3 34 34 H 1.08000 * 120.40657 * 179.72153 * 6 5 4 35 35 H 0.96998 * 119.99647 * 179.97438 * 9 8 7 36 36 H 1.08007 * 119.97963 * 359.97438 * 13 12 10 37 37 H 1.08002 * 119.87516 * 180.25628 * 14 13 12 38 38 H 1.08002 * 119.89487 * 179.76923 * 15 14 13 39 39 H 0.97000 * 120.00224 * 179.97438 * 21 20 18 40 40 H 1.08003 * 120.12513 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.1176 -0.0609 -0.0006 6 6 5.5020 -0.1253 0.0052 7 7 6.2001 0.9983 -0.0012 8 6 5.5908 2.1740 -0.0009 9 7 6.3550 3.3331 -0.0010 10 6 7.7003 3.2533 -0.0011 11 8 8.2447 2.1666 -0.0005 12 6 8.5139 4.4873 -0.0007 13 6 7.8906 5.7376 -0.0061 14 6 8.6516 6.8890 -0.0009 15 6 10.0313 6.8116 -0.0010 16 6 10.6630 5.5713 -0.0008 17 16 12.4226 5.4783 -0.0015 18 6 12.7203 5.3265 -1.7314 19 1 11.8990 5.3989 -2.4291 20 6 14.0095 5.1140 -2.1974 21 7 14.2320 5.0011 -3.4898 22 14 15.4301 4.9895 -0.9908 23 1 15.6104 3.5731 -0.5828 24 1 16.6735 5.4805 -1.6375 25 1 15.1358 5.8161 0.2074 26 6 9.9057 4.4073 -0.0011 27 7 4.2699 2.2706 -0.0002 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.5232 -0.9627 -0.0005 34 1 6.0047 -1.0811 0.0099 35 1 5.9206 4.2004 -0.0011 36 1 6.8125 5.8031 -0.0110 37 1 8.1670 7.8542 -0.0010 38 1 10.6212 7.7163 -0.0007 39 1 15.1336 4.8529 -3.8156 40 1 10.3932 3.4436 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463364799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:20 Heat of formation + Delta-G solvation = 20.217226 kcal Electronic energy + Delta-G solvation = -25494.741894 eV Core-core repulsion = 21595.169960 eV Total energy + Delta-G solvation = -3899.571935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.56581 -39.95872 -38.45663 -37.91256 -35.22629 -34.22850 -32.50980 -31.94462 -30.77449 -30.49870 -28.58729 -26.47614 -25.69347 -24.95840 -23.82083 -22.87278 -22.22785 -20.49753 -19.14681 -18.07050 -17.56978 -17.15262 -16.60701 -16.45160 -16.18775 -15.74408 -15.71555 -15.36322 -15.12470 -14.97322 -14.49988 -14.36594 -14.29387 -13.82395 -13.51595 -13.21642 -12.94062 -12.93180 -12.49173 -12.03016 -11.99544 -11.45353 -11.31819 -11.17764 -11.11795 -11.09926 -10.97109 -10.67208 -10.19973 -10.04275 -9.90875 -9.27455 -9.18198 -9.09121 -8.90686 -8.70630 -8.20855 -7.15560 -6.33759 -4.09896 0.64770 0.83086 1.11991 1.53113 2.22296 2.82209 2.90468 2.99650 3.26976 3.37906 3.47472 3.63905 3.96893 4.01412 4.11597 4.25259 4.39941 4.59823 4.76079 4.76814 4.80626 4.87181 4.92013 4.96499 5.04338 5.04862 5.08283 5.12992 5.16764 5.41051 5.58578 5.71186 5.81233 5.83105 6.10872 6.27055 6.39781 6.47770 6.50168 6.73827 6.83972 6.92625 7.05053 7.90185 7.93119 8.11901 8.43575 9.09904 10.75552 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.022567 B = 0.002024 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.452461 B =13832.817344 C =14557.861191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.387 6.387 3 C 0.114 3.886 4 C 0.199 3.801 5 C -0.242 4.242 6 C 0.178 3.822 7 N -0.501 5.501 8 C 0.547 3.453 9 N -0.639 5.639 10 C 0.560 3.440 11 O -0.457 6.457 12 C -0.151 4.151 13 C -0.085 4.085 14 C -0.137 4.137 15 C -0.047 4.047 16 C -0.085 4.085 17 S -0.109 6.109 18 C -0.511 4.511 19 H 0.092 0.908 20 C 0.095 3.905 21 N -0.875 5.875 22 Si 0.858 3.142 23 H -0.265 1.265 24 H -0.273 1.273 25 H -0.239 1.239 26 C -0.012 4.012 27 N -0.551 5.551 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.156 0.844 34 H 0.174 0.826 35 H 0.421 0.579 36 H 0.120 0.880 37 H 0.128 0.872 38 H 0.135 0.865 39 H 0.272 0.728 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.011 -4.880 8.582 28.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.306 6.306 3 C 0.037 3.963 4 C 0.052 3.948 5 C -0.266 4.266 6 C 0.011 3.989 7 N -0.221 5.221 8 C 0.192 3.808 9 N -0.290 5.290 10 C 0.347 3.653 11 O -0.325 6.325 12 C -0.157 4.157 13 C -0.104 4.104 14 C -0.157 4.157 15 C -0.068 4.068 16 C -0.196 4.196 17 S 0.125 5.875 18 C -0.658 4.658 19 H 0.110 0.890 20 C -0.114 4.114 21 N -0.511 5.511 22 Si 0.682 3.318 23 H -0.190 1.190 24 H -0.198 1.198 25 H -0.163 1.163 26 C -0.034 4.034 27 N -0.274 5.274 28 H 0.064 0.936 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.173 0.827 34 H 0.191 0.809 35 H 0.260 0.740 36 H 0.138 0.862 37 H 0.146 0.854 38 H 0.153 0.847 39 H 0.082 0.918 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -24.870 -4.940 9.284 27.002 hybrid contribution -1.218 -0.190 -0.848 1.496 sum -26.088 -5.130 8.437 27.894 Atomic orbital electron populations 1.22797 0.79751 1.03329 1.00432 1.87813 1.20497 1.26614 1.95627 1.20941 0.87322 0.85404 1.02614 1.20834 0.95123 0.88278 0.90596 1.22535 0.96797 1.00181 1.07087 1.23317 0.90701 0.96825 0.88056 1.68560 1.39764 0.97312 1.16465 1.19256 0.84459 0.86629 0.90491 1.43204 1.06574 1.06873 1.72376 1.18564 0.80278 0.90038 0.76408 1.90902 1.70274 1.28452 1.42839 1.19637 0.94117 0.91604 1.10300 1.21206 0.99041 0.91885 0.98287 1.21056 0.93945 0.98026 1.02687 1.21947 0.94121 0.97786 0.92969 1.22215 1.00887 0.94064 1.02421 1.83096 0.94127 1.96014 1.14305 1.22247 0.98236 1.57586 0.87707 0.89036 1.24742 0.98196 0.93244 0.95191 1.69924 1.22259 1.46441 1.12441 0.86736 0.82285 0.80360 0.82386 1.18991 1.19773 1.16342 1.21907 0.91108 0.99555 0.90796 1.67245 1.05013 1.34056 1.21075 0.93609 0.89049 0.93640 0.90207 0.90195 0.82657 0.80891 0.73959 0.86185 0.85377 0.84716 0.91783 0.83922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.39 -2.72 9.26 -35.23 -0.33 -3.05 16 3 C 0.11 0.81 6.50 36.00 0.23 1.04 16 4 C 0.20 2.05 6.82 -82.26 -0.56 1.49 16 5 C -0.24 -2.37 9.47 -39.31 -0.37 -2.74 16 6 C 0.18 2.04 11.30 -17.23 -0.19 1.84 16 7 N -0.50 -7.71 7.87 -13.85 -0.11 -7.82 16 8 C 0.55 7.86 8.38 -322.34 -2.70 5.16 16 9 N -0.64 -8.64 5.35 -13.95 -0.07 -8.71 16 10 C 0.56 9.30 7.73 -12.35 -0.10 9.20 16 11 O -0.46 -9.20 14.54 5.33 0.08 -9.12 16 12 C -0.15 -2.48 5.87 -105.00 -0.62 -3.09 16 13 C -0.09 -1.11 9.54 -39.11 -0.37 -1.48 16 14 C -0.14 -1.84 10.02 -39.68 -0.40 -2.24 16 15 C -0.05 -0.80 9.79 -39.25 -0.38 -1.18 16 16 C -0.09 -1.74 5.45 -39.00 -0.21 -1.95 16 17 S -0.11 -2.62 19.38 -107.50 -2.08 -4.71 16 18 C -0.51 -14.59 10.00 30.91 0.31 -14.28 16 19 H 0.09 2.84 8.02 -52.48 -0.42 2.42 16 20 C 0.10 2.74 5.50 -17.46 -0.10 2.65 16 21 N -0.87 -26.22 13.97 55.49 0.78 -25.45 16 22 Si 0.86 20.97 27.73 -169.99 -4.71 16.25 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.24 -5.65 6.74 56.52 0.38 -5.27 16 26 C -0.01 -0.24 9.34 -38.91 -0.36 -0.60 16 27 N -0.55 -6.73 10.39 -10.07 -0.10 -6.83 16 28 H 0.05 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.04 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.16 1.20 7.11 -52.48 -0.37 0.83 16 34 H 0.17 1.44 8.06 -52.49 -0.42 1.01 16 35 H 0.42 4.28 6.84 -40.82 -0.28 4.00 16 36 H 0.12 1.08 6.40 -52.48 -0.34 0.74 16 37 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 38 H 0.13 2.14 8.06 -52.49 -0.42 1.71 16 39 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.14 3.00 7.65 -52.48 -0.40 2.60 16 LS Contribution 365.38 15.07 5.51 5.51 Total: -1.00 -35.38 365.38 -10.11 -45.50 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -4.35 Total: 3.39 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -4.71 Total: -4.95 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.49 Total: -48.82 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -0.25 Total: -12.17 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.71 Total: 16.25 kcal Atomic # 16 Polarization: -2.62 SS G_CDS: -2.08 Total: -4.71 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.38 -10.11 -45.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463364799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.714 kcal (2) G-P(sol) polarization free energy of solvation -35.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds