Wall clock time and date at job start Wed Apr 1 2020 02:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00188 * 2 1 4 4 C 1.50697 * 109.47174 * 180.02562 * 3 2 1 5 5 C 1.38635 * 120.40922 * 359.97438 * 4 3 2 6 6 C 1.38586 * 118.54143 * 180.29936 * 5 4 3 7 7 N 1.32288 * 119.18958 * 359.42077 * 6 5 4 8 8 C 1.32416 * 120.74652 * 0.61391 * 7 6 5 9 9 N 1.38842 * 119.20451 * 179.68314 * 8 7 6 10 10 C 1.34768 * 119.99983 * 359.97438 * 9 8 7 11 11 O 1.21536 * 120.00491 * 359.97438 * 10 9 8 12 12 C 1.47813 * 119.99851 * 180.02562 * 10 9 8 13 13 C 1.39698 * 120.10499 * 359.72450 * 12 10 9 14 14 C 1.38028 * 120.03739 * 179.77096 * 13 12 10 15 15 C 1.38184 * 120.24874 * 0.50497 * 14 13 12 16 16 C 1.39183 * 120.20181 * 359.74288 * 15 14 13 17 17 S 1.76206 * 120.01525 * 179.97438 * 16 15 14 18 18 C 1.76195 * 100.00220 * 265.53106 * 17 16 15 19 19 H 1.08007 * 119.99637 * 5.12292 * 18 17 16 20 20 C 1.38719 * 120.00330 * 185.12232 * 18 17 16 21 21 N 1.31626 * 120.00512 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00088 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47572 * 89.99872 * 22 20 18 24 24 H 1.48501 * 109.47681 * 210.00344 * 22 20 18 25 25 H 1.48510 * 109.46973 * 330.00049 * 22 20 18 26 26 C 1.38865 * 119.96514 * 0.02562 * 16 15 14 27 27 N 1.32260 * 120.40749 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.47246 * 59.99857 * 1 2 3 29 29 H 1.08997 * 109.47118 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46778 * 300.00206 * 1 2 3 31 31 H 1.09000 * 109.47319 * 59.99754 * 3 2 1 32 32 H 1.09003 * 109.46826 * 299.99776 * 3 2 1 33 33 H 1.08007 * 120.72672 * 0.02562 * 5 4 3 34 34 H 1.08000 * 120.40657 * 179.72153 * 6 5 4 35 35 H 0.96998 * 119.99647 * 179.97438 * 9 8 7 36 36 H 1.08007 * 119.97963 * 359.97438 * 13 12 10 37 37 H 1.08002 * 119.87516 * 180.25628 * 14 13 12 38 38 H 1.08002 * 119.89487 * 179.76923 * 15 14 13 39 39 H 0.97000 * 120.00224 * 179.97438 * 21 20 18 40 40 H 1.08003 * 120.12513 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.1176 -0.0609 -0.0006 6 6 5.5020 -0.1253 0.0052 7 7 6.2001 0.9983 -0.0012 8 6 5.5908 2.1740 -0.0009 9 7 6.3550 3.3331 -0.0010 10 6 7.7003 3.2533 -0.0011 11 8 8.2447 2.1666 -0.0005 12 6 8.5139 4.4873 -0.0007 13 6 7.8906 5.7376 -0.0061 14 6 8.6516 6.8890 -0.0009 15 6 10.0313 6.8116 -0.0010 16 6 10.6630 5.5713 -0.0008 17 16 12.4226 5.4783 -0.0015 18 6 12.7203 5.3265 -1.7314 19 1 11.8990 5.3989 -2.4291 20 6 14.0095 5.1140 -2.1974 21 7 14.2320 5.0011 -3.4898 22 14 15.4301 4.9895 -0.9908 23 1 15.6104 3.5731 -0.5828 24 1 16.6735 5.4805 -1.6375 25 1 15.1358 5.8161 0.2074 26 6 9.9057 4.4073 -0.0011 27 7 4.2699 2.2706 -0.0002 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.5232 -0.9627 -0.0005 34 1 6.0047 -1.0811 0.0099 35 1 5.9206 4.2004 -0.0011 36 1 6.8125 5.8031 -0.0110 37 1 8.1670 7.8542 -0.0010 38 1 10.6212 7.7163 -0.0007 39 1 15.1336 4.8529 -3.8156 40 1 10.3932 3.4436 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463364799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:19 Heat of formation + Delta-G solvation = -2.579056 kcal Electronic energy + Delta-G solvation = -25495.730415 eV Core-core repulsion = 21595.169960 eV Total energy + Delta-G solvation = -3900.560456 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.54356 -41.13651 -39.34824 -38.80927 -36.37372 -35.11149 -34.72139 -33.03197 -32.05148 -31.63058 -29.20323 -27.92571 -26.96003 -26.04097 -24.74385 -24.02722 -23.40898 -21.67827 -20.36561 -19.72257 -18.71905 -18.30843 -17.30572 -17.23333 -17.15087 -16.99100 -16.70781 -16.67557 -16.65502 -15.94700 -15.72776 -15.42921 -15.40069 -14.99659 -14.92436 -14.75416 -14.00431 -13.65599 -13.63543 -13.50472 -13.16942 -13.07779 -12.77448 -12.45001 -12.32756 -12.15723 -12.09625 -11.86089 -11.78754 -11.27834 -11.22097 -10.97940 -10.68349 -10.17177 -10.09305 -9.83858 -9.75347 -9.15096 -8.54099 -6.28551 -0.46081 -0.02447 -0.01413 0.18380 1.03972 1.22853 1.31504 1.43696 1.60165 1.71181 2.21221 2.37545 2.51891 2.74281 2.84035 2.93788 3.03850 3.41205 3.50506 3.72056 3.87206 3.94949 4.00724 4.27011 4.28270 4.34941 4.39035 4.42545 4.53807 4.59417 4.63762 4.65102 4.85124 4.92150 4.95078 5.10778 5.25418 5.34755 5.39643 5.68348 5.73981 5.86139 5.97299 6.10046 6.12028 6.79522 6.88239 7.11623 8.59370 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.022567 B = 0.002024 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.452461 B =13832.817344 C =14557.861191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.120 3.880 4 C 0.189 3.811 5 C -0.227 4.227 6 C 0.165 3.835 7 N -0.547 5.547 8 C 0.524 3.476 9 N -0.624 5.624 10 C 0.563 3.437 11 O -0.504 6.504 12 C -0.155 4.155 13 C -0.058 4.058 14 C -0.118 4.118 15 C -0.052 4.052 16 C -0.120 4.120 17 S -0.111 6.111 18 C -0.526 4.526 19 H 0.047 0.953 20 C 0.040 3.960 21 N -0.919 5.919 22 Si 0.922 3.078 23 H -0.263 1.263 24 H -0.257 1.257 25 H -0.226 1.226 26 C -0.036 4.036 27 N -0.546 5.546 28 H 0.054 0.946 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.179 0.821 34 H 0.195 0.805 35 H 0.437 0.563 36 H 0.174 0.826 37 H 0.181 0.819 38 H 0.144 0.856 39 H 0.278 0.722 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.451 -3.677 10.040 32.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.324 6.324 3 C 0.043 3.957 4 C 0.042 3.958 5 C -0.251 4.251 6 C 0.000 4.000 7 N -0.268 5.268 8 C 0.168 3.832 9 N -0.276 5.276 10 C 0.351 3.649 11 O -0.375 6.375 12 C -0.160 4.160 13 C -0.076 4.076 14 C -0.138 4.138 15 C -0.073 4.073 16 C -0.231 4.231 17 S 0.123 5.877 18 C -0.673 4.673 19 H 0.065 0.935 20 C -0.165 4.165 21 N -0.556 5.556 22 Si 0.743 3.257 23 H -0.188 1.188 24 H -0.181 1.181 25 H -0.149 1.149 26 C -0.058 4.058 27 N -0.269 5.269 28 H 0.073 0.927 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.196 0.804 34 H 0.212 0.788 35 H 0.279 0.721 36 H 0.191 0.809 37 H 0.198 0.802 38 H 0.162 0.838 39 H 0.087 0.913 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -28.380 -3.729 10.748 30.576 hybrid contribution -0.522 -0.627 -1.321 1.553 sum -28.902 -4.356 9.427 30.711 Atomic orbital electron populations 1.22991 0.78075 1.04363 1.01404 1.87775 1.22260 1.26532 1.95819 1.20984 0.84945 0.85891 1.03914 1.21519 0.96814 0.88019 0.89425 1.22787 0.96152 1.01062 1.05053 1.23770 0.91703 0.96733 0.87841 1.68490 1.41669 0.98656 1.17966 1.19380 0.85316 0.86554 0.91968 1.42860 1.05402 1.07722 1.71616 1.18579 0.81219 0.89389 0.75720 1.90879 1.71419 1.30006 1.45204 1.19662 0.92671 0.93267 1.10446 1.21790 1.01684 0.89928 0.94249 1.21579 0.92123 1.00371 0.99695 1.22153 0.96202 0.96400 0.92507 1.22084 0.98312 0.96042 1.06654 1.82634 0.98684 1.96185 1.10227 1.22397 0.97263 1.57262 0.90354 0.93505 1.25734 1.00999 0.92681 0.97070 1.70033 1.23325 1.47747 1.14527 0.85771 0.78925 0.80612 0.80433 1.18777 1.18141 1.14891 1.21639 0.92971 0.98066 0.93101 1.67311 1.03892 1.34698 1.20957 0.92701 0.88086 0.92590 0.88660 0.88860 0.80410 0.78807 0.72115 0.80855 0.80155 0.83836 0.91277 0.87173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 113.37 1.25 1.38 16 2 O -0.40 -4.55 9.26 -148.98 -1.38 -5.93 16 3 C 0.12 1.34 6.50 71.23 0.46 1.81 16 4 C 0.19 3.51 6.82 42.59 0.29 3.80 16 5 C -0.23 -4.06 9.47 22.45 0.21 -3.85 16 6 C 0.16 3.70 11.30 84.71 0.96 4.66 16 7 N -0.55 -17.06 7.87 -197.74 -1.56 -18.62 16 8 C 0.52 14.70 8.38 261.32 2.19 16.89 16 9 N -0.62 -16.11 5.35 -316.34 -1.69 -17.80 16 10 C 0.56 18.90 7.73 86.78 0.67 19.57 16 11 O -0.50 -21.42 14.54 -3.83 -0.06 -21.47 16 12 C -0.16 -5.01 5.87 -20.11 -0.12 -5.13 16 13 C -0.06 -1.30 9.54 22.57 0.22 -1.08 16 14 C -0.12 -2.68 10.02 22.21 0.22 -2.46 16 15 C -0.05 -1.69 9.79 22.48 0.22 -1.47 16 16 C -0.12 -5.04 5.45 22.65 0.12 -4.92 16 17 S -0.11 -5.52 19.38 -56.49 -1.09 -6.62 16 18 C -0.53 -31.66 10.00 67.93 0.68 -30.98 16 19 H 0.05 3.12 8.02 -2.91 -0.02 3.10 16 20 C 0.04 2.40 5.50 84.84 0.47 2.86 16 21 N -0.92 -57.35 13.97 21.63 0.30 -57.05 16 22 Si 0.92 44.25 27.73 68.60 1.90 46.16 16 23 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.23 -10.24 6.74 99.48 0.67 -9.57 16 26 C -0.04 -1.48 9.34 22.70 0.21 -1.27 16 27 N -0.55 -12.36 10.39 -185.78 -1.93 -14.29 16 28 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.06 0.16 8.14 -2.38 -0.02 0.14 16 31 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.18 2.32 7.11 -2.91 -0.02 2.30 16 34 H 0.20 3.17 8.06 -2.91 -0.02 3.15 16 35 H 0.44 7.57 6.84 -92.71 -0.63 6.94 16 36 H 0.17 2.04 6.40 -2.91 -0.02 2.02 16 37 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 38 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 39 H 0.28 15.93 8.31 -92.71 -0.77 15.16 16 40 H 0.11 5.13 7.65 -2.91 -0.02 5.11 16 Total: -1.00 -84.40 365.38 2.98 -81.42 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.43 Total: 14.39 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 8.05 Total: -0.18 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -4.88 Total: -107.76 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -1.43 Total: -27.40 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.90 Total: 46.16 kcal Atomic # 16 Polarization: -5.52 SS G_CDS: -1.09 Total: -6.62 kcal Total: -84.40 2.98 -81.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463364799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.841 kcal (2) G-P(sol) polarization free energy of solvation -84.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds