Wall clock time and date at job start Wed Apr 1 2020 02:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00367 * 2 1 4 4 C 1.53005 * 109.47260 * 180.02562 * 3 2 1 5 5 N 1.46491 * 109.47274 * 65.00023 * 4 3 2 6 6 C 1.36884 * 119.99917 * 264.67093 * 5 4 3 7 7 H 1.07996 * 120.00306 * 126.39655 * 6 5 4 8 8 C 1.38947 * 119.99950 * 306.39091 * 6 5 4 9 9 N 1.31439 * 119.99818 * 4.30868 * 8 6 5 10 10 Si 1.86805 * 120.00023 * 184.30872 * 8 6 5 11 11 H 1.48498 * 109.46841 * 359.97438 * 10 8 6 12 12 H 1.48491 * 109.47265 * 120.00120 * 10 8 6 13 13 H 1.48506 * 109.46828 * 240.00143 * 10 8 6 14 14 C 1.34773 * 120.00370 * 84.67123 * 5 4 3 15 15 O 1.21843 * 119.99765 * 3.87253 * 14 5 4 16 16 C 1.41679 * 120.00564 * 183.87610 * 14 5 4 17 17 C 1.36097 * 124.93815 * 173.03563 * 16 14 5 18 18 C 1.38441 * 115.15593 * 179.97438 * 17 16 14 19 19 C 1.38828 * 113.53527 * 359.97438 * 18 17 16 20 20 N 1.34183 * 108.21678 * 179.97438 * 19 18 17 21 21 C 1.32674 * 109.77993 * 359.97438 * 20 19 18 22 22 C 1.40924 * 131.72712 * 180.02562 * 21 20 19 23 23 C 1.36174 * 119.33033 * 179.97438 * 22 21 20 24 24 C 1.40321 * 119.76273 * 0.02562 * 23 22 21 25 25 C 1.35198 * 120.15265 * 359.97438 * 24 23 22 26 26 N 1.36128 * 120.48616 * 0.02562 * 25 24 23 27 27 S 1.75599 * 124.93050 * 353.03202 * 16 14 5 28 28 H 1.09000 * 109.47067 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47180 * 300.00148 * 1 2 3 30 30 H 1.09000 * 109.46907 * 60.00311 * 1 2 3 31 31 H 1.08996 * 109.46986 * 59.99736 * 3 2 1 32 32 H 1.09006 * 109.47053 * 299.99875 * 3 2 1 33 33 H 1.09000 * 109.46632 * 304.99613 * 4 3 2 34 34 H 1.08996 * 109.46658 * 184.99948 * 4 3 2 35 35 H 0.97001 * 119.99845 * 180.02562 * 9 8 6 36 36 H 1.07997 * 122.42015 * 359.97323 * 17 16 14 37 37 H 1.07999 * 120.33471 * 359.97438 * 22 21 20 38 38 H 1.08006 * 120.12337 * 179.97438 * 23 22 21 39 39 H 1.08003 * 119.92537 * 180.02562 * 24 23 22 40 40 H 1.08004 * 119.76017 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.2018 -0.7847 -1.3057 7 1 3.7127 -1.3850 -2.0585 8 6 5.0606 -1.3816 -0.3910 9 7 5.5897 -0.6670 0.5769 10 14 5.4633 -3.1999 -0.5370 11 1 4.7445 -3.7740 -1.7027 12 1 6.9265 -3.3694 -0.7246 13 1 5.0383 -3.9019 0.7008 14 6 4.1581 1.3219 -2.3523 15 8 4.0255 2.5313 -2.2877 16 6 4.5040 0.7120 -3.5834 17 6 4.5801 1.3578 -4.7790 18 6 4.9378 0.5637 -5.8551 19 6 5.1574 -0.7643 -5.5153 20 7 5.4946 -1.4321 -6.6293 21 6 5.5022 -0.6028 -7.6649 22 6 5.7858 -0.8093 -9.0298 23 6 5.7156 0.2422 -9.8922 24 6 5.3637 1.5134 -9.4134 25 6 5.0947 1.6943 -8.1009 26 7 5.1624 0.6489 -7.2316 27 16 4.8969 -0.9872 -3.7884 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8463 0.8899 32 1 1.6887 1.8464 -0.8900 33 1 3.8514 0.5681 0.8410 34 1 3.9785 2.1764 0.0889 35 1 6.1896 -1.0836 1.2153 36 1 4.3762 2.4134 -4.8808 37 1 6.0561 -1.7916 -9.3882 38 1 5.9308 0.0986 -10.9408 39 1 5.3068 2.3492 -10.0951 40 1 4.8241 2.6754 -7.7393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548717776.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:54 Heat of formation + Delta-G solvation = 45.971523 kcal Electronic energy + Delta-G solvation = -27430.893964 eV Core-core repulsion = 23532.438819 eV Total energy + Delta-G solvation = -3898.455145 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.34861 -39.02434 -37.53485 -37.01265 -35.08127 -34.29839 -33.14883 -31.92860 -30.05068 -29.59656 -27.56562 -25.93045 -25.20047 -24.22275 -23.34569 -22.45941 -21.93339 -20.30270 -19.24841 -18.13563 -17.02044 -16.72228 -16.25573 -15.82333 -15.80059 -15.66487 -15.44528 -14.81482 -14.72267 -14.58312 -14.35845 -14.16570 -13.66966 -13.54411 -13.03683 -12.50656 -12.27332 -12.22000 -12.02064 -11.81106 -11.69740 -11.42179 -11.21723 -11.12422 -11.09758 -11.06355 -10.46275 -10.39548 -10.21654 -10.11105 -9.65962 -9.10326 -9.02033 -8.81567 -8.72448 -7.63552 -7.59591 -6.89500 -6.63145 -4.52559 0.75533 0.85992 2.05719 2.13329 2.60333 2.89582 3.09195 3.14554 3.16814 3.19711 3.64599 3.91684 4.28850 4.35845 4.42835 4.55195 4.61408 4.76038 4.85343 4.94413 5.06617 5.47452 5.62179 5.65222 5.66236 5.70523 5.93738 5.95161 5.97903 6.03099 6.11238 6.17095 6.23702 6.43386 6.49497 6.57090 6.69209 6.78996 7.05253 7.23726 7.27633 7.73049 7.89983 8.01547 8.05755 8.74117 9.21898 9.66381 10.33848 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013846 B = 0.003786 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.816065 B = 7394.782755 C = 8479.936248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.050 3.950 4 C 0.122 3.878 5 N -0.428 5.428 6 C -0.320 4.320 7 H 0.104 0.896 8 C 0.071 3.929 9 N -0.836 5.836 10 Si 0.902 3.098 11 H -0.252 1.252 12 H -0.269 1.269 13 H -0.272 1.272 14 C 0.546 3.454 15 O -0.596 6.596 16 C -0.196 4.196 17 C -0.056 4.056 18 C -0.056 4.056 19 C -0.063 4.063 20 N -0.470 5.470 21 C 0.262 3.738 22 C -0.097 4.097 23 C -0.087 4.087 24 C -0.176 4.176 25 C 0.088 3.912 26 N -0.365 5.365 27 S 0.304 5.696 28 H 0.078 0.922 29 H 0.030 0.970 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.113 0.887 34 H 0.073 0.927 35 H 0.279 0.721 36 H 0.138 0.862 37 H 0.150 0.850 38 H 0.140 0.860 39 H 0.148 0.852 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.617 1.427 -11.114 11.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.028 4.028 4 C -0.002 4.002 5 N -0.146 5.146 6 C -0.459 4.459 7 H 0.120 0.880 8 C -0.142 4.142 9 N -0.468 5.468 10 Si 0.726 3.274 11 H -0.175 1.175 12 H -0.194 1.194 13 H -0.197 1.197 14 C 0.337 3.663 15 O -0.484 6.484 16 C -0.318 4.318 17 C -0.092 4.092 18 C -0.168 4.168 19 C -0.302 4.302 20 N -0.193 5.193 21 C 0.014 3.986 22 C -0.118 4.118 23 C -0.111 4.111 24 C -0.199 4.199 25 C -0.037 4.037 26 N -0.041 5.041 27 S 0.575 5.425 28 H 0.097 0.903 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.131 0.869 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.156 0.844 37 H 0.168 0.832 38 H 0.158 0.842 39 H 0.165 0.835 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.157 -0.249 -9.914 10.149 hybrid contribution -0.310 1.661 -1.040 1.984 sum -2.467 1.411 -10.953 11.316 Atomic orbital electron populations 1.22648 0.83267 1.01829 0.98870 1.88113 1.17513 1.27706 1.95066 1.23070 0.96458 0.84408 0.98856 1.21499 0.89088 0.99271 0.90345 1.43143 1.56830 1.06898 1.07730 1.19232 1.26731 0.83230 1.16671 0.88002 1.25696 0.93460 1.00462 0.94568 1.69763 1.26861 1.37245 1.12974 0.86185 0.79554 0.81772 0.79885 1.17525 1.19441 1.19686 1.16137 0.80502 0.86164 0.83520 1.90697 1.58012 1.13620 1.86058 1.22929 1.13075 0.98455 0.97294 1.18794 1.02740 0.99625 0.88041 1.18655 1.18155 0.97589 0.82397 1.27569 1.03994 0.93107 1.05488 1.70406 1.23972 1.29376 0.95521 1.21077 1.01920 0.79861 0.95700 1.20267 1.02915 1.01058 0.87568 1.21004 0.98111 0.91901 1.00128 1.20698 1.06394 0.98988 0.93790 1.21746 0.99598 0.92341 0.90003 1.42518 1.46128 1.09280 1.06181 1.86320 1.65024 1.03784 0.87350 0.90323 0.95102 0.94997 0.94008 0.94059 0.86904 0.90837 0.91068 0.84416 0.83221 0.84238 0.83467 0.82259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.59 16 2 O -0.37 -7.40 10.43 -35.23 -0.37 -7.77 16 3 C 0.05 0.99 6.24 37.16 0.23 1.22 16 4 C 0.12 2.75 5.26 -4.04 -0.02 2.73 16 5 N -0.43 -10.44 2.41 -118.04 -0.29 -10.72 16 6 C -0.32 -7.69 6.24 -15.03 -0.09 -7.78 16 7 H 0.10 2.44 5.54 -32.20 -0.18 2.26 16 8 C 0.07 1.69 5.34 -17.46 -0.09 1.60 16 9 N -0.84 -20.51 11.38 55.50 0.63 -19.88 16 10 Si 0.90 18.55 29.56 -169.99 -5.02 13.53 16 11 H -0.25 -5.04 7.11 56.52 0.40 -4.64 16 12 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 13 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 14 C 0.55 13.49 7.39 -14.95 -0.11 13.38 16 15 O -0.60 -15.54 16.31 5.06 0.08 -15.46 16 16 C -0.20 -4.46 6.09 -39.04 -0.24 -4.69 16 17 C -0.06 -1.15 9.82 -40.28 -0.40 -1.55 16 18 C -0.06 -1.14 7.44 -83.97 -0.62 -1.76 16 19 C -0.06 -1.34 8.33 -16.31 -0.14 -1.48 16 20 N -0.47 -9.70 11.30 -11.04 -0.12 -9.82 16 21 C 0.26 4.58 7.78 -156.26 -1.21 3.37 16 22 C -0.10 -1.22 10.11 -39.31 -0.40 -1.61 16 23 C -0.09 -0.83 10.06 -39.54 -0.40 -1.23 16 24 C -0.18 -1.67 10.00 -39.88 -0.40 -2.07 16 25 C 0.09 1.10 10.95 -16.73 -0.18 0.92 16 26 N -0.36 -6.27 2.99 -60.59 -0.18 -6.45 16 27 S 0.30 6.58 18.34 -107.50 -1.97 4.61 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.11 2.69 5.97 -51.93 -0.31 2.38 16 34 H 0.07 1.67 7.53 -51.93 -0.39 1.28 16 35 H 0.28 6.39 8.31 -40.82 -0.34 6.05 16 36 H 0.14 2.65 7.96 -52.49 -0.42 2.24 16 37 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 39 H 0.15 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.16 1.61 8.06 -52.48 -0.42 1.18 16 LS Contribution 354.36 15.07 5.34 5.34 Total: -1.00 -31.03 354.36 -9.10 -40.13 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.24 Total: 3.87 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -2.96 Total: 2.62 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.04 Total: -46.87 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.28 Total: -23.22 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.02 Total: 13.53 kcal Atomic # 16 Polarization: 6.58 SS G_CDS: -1.97 Total: 4.61 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.03 -9.10 -40.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548717776.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.100 kcal (2) G-P(sol) polarization free energy of solvation -31.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds