Wall clock time and date at job start Wed Apr 1 2020 02:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00367 * 2 1 4 4 C 1.53005 * 109.47260 * 180.02562 * 3 2 1 5 5 N 1.46491 * 109.47274 * 65.00023 * 4 3 2 6 6 C 1.36884 * 119.99917 * 264.67093 * 5 4 3 7 7 H 1.07996 * 120.00306 * 126.39655 * 6 5 4 8 8 C 1.38947 * 119.99950 * 306.39091 * 6 5 4 9 9 N 1.31439 * 119.99818 * 4.30868 * 8 6 5 10 10 Si 1.86805 * 120.00023 * 184.30872 * 8 6 5 11 11 H 1.48498 * 109.46841 * 359.97438 * 10 8 6 12 12 H 1.48491 * 109.47265 * 120.00120 * 10 8 6 13 13 H 1.48506 * 109.46828 * 240.00143 * 10 8 6 14 14 C 1.34773 * 120.00370 * 84.67123 * 5 4 3 15 15 O 1.21843 * 119.99765 * 3.87253 * 14 5 4 16 16 C 1.41679 * 120.00564 * 183.87610 * 14 5 4 17 17 C 1.36097 * 124.93815 * 173.03563 * 16 14 5 18 18 C 1.38441 * 115.15593 * 179.97438 * 17 16 14 19 19 C 1.38828 * 113.53527 * 359.97438 * 18 17 16 20 20 N 1.34183 * 108.21678 * 179.97438 * 19 18 17 21 21 C 1.32674 * 109.77993 * 359.97438 * 20 19 18 22 22 C 1.40924 * 131.72712 * 180.02562 * 21 20 19 23 23 C 1.36174 * 119.33033 * 179.97438 * 22 21 20 24 24 C 1.40321 * 119.76273 * 0.02562 * 23 22 21 25 25 C 1.35198 * 120.15265 * 359.97438 * 24 23 22 26 26 N 1.36128 * 120.48616 * 0.02562 * 25 24 23 27 27 S 1.75599 * 124.93050 * 353.03202 * 16 14 5 28 28 H 1.09000 * 109.47067 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47180 * 300.00148 * 1 2 3 30 30 H 1.09000 * 109.46907 * 60.00311 * 1 2 3 31 31 H 1.08996 * 109.46986 * 59.99736 * 3 2 1 32 32 H 1.09006 * 109.47053 * 299.99875 * 3 2 1 33 33 H 1.09000 * 109.46632 * 304.99613 * 4 3 2 34 34 H 1.08996 * 109.46658 * 184.99948 * 4 3 2 35 35 H 0.97001 * 119.99845 * 180.02562 * 9 8 6 36 36 H 1.07997 * 122.42015 * 359.97323 * 17 16 14 37 37 H 1.07999 * 120.33471 * 359.97438 * 22 21 20 38 38 H 1.08006 * 120.12337 * 179.97438 * 23 22 21 39 39 H 1.08003 * 119.92537 * 180.02562 * 24 23 22 40 40 H 1.08004 * 119.76017 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.2018 -0.7847 -1.3057 7 1 3.7127 -1.3850 -2.0585 8 6 5.0606 -1.3816 -0.3910 9 7 5.5897 -0.6670 0.5769 10 14 5.4633 -3.1999 -0.5370 11 1 4.7445 -3.7740 -1.7027 12 1 6.9265 -3.3694 -0.7246 13 1 5.0383 -3.9019 0.7008 14 6 4.1581 1.3219 -2.3523 15 8 4.0255 2.5313 -2.2877 16 6 4.5040 0.7120 -3.5834 17 6 4.5801 1.3578 -4.7790 18 6 4.9378 0.5637 -5.8551 19 6 5.1574 -0.7643 -5.5153 20 7 5.4946 -1.4321 -6.6293 21 6 5.5022 -0.6028 -7.6649 22 6 5.7858 -0.8093 -9.0298 23 6 5.7156 0.2422 -9.8922 24 6 5.3637 1.5134 -9.4134 25 6 5.0947 1.6943 -8.1009 26 7 5.1624 0.6489 -7.2316 27 16 4.8969 -0.9872 -3.7884 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8463 0.8899 32 1 1.6887 1.8464 -0.8900 33 1 3.8514 0.5681 0.8410 34 1 3.9785 2.1764 0.0889 35 1 6.1896 -1.0836 1.2153 36 1 4.3762 2.4134 -4.8808 37 1 6.0561 -1.7916 -9.3882 38 1 5.9308 0.0986 -10.9408 39 1 5.3068 2.3492 -10.0951 40 1 4.8241 2.6754 -7.7393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548717776.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:53 Heat of formation + Delta-G solvation = 27.137795 kcal Electronic energy + Delta-G solvation = -27431.710656 eV Core-core repulsion = 23532.438819 eV Total energy + Delta-G solvation = -3899.271836 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.65699 -40.82039 -38.81408 -38.46048 -36.81257 -35.86064 -34.32287 -33.73755 -31.53530 -30.87402 -28.99805 -27.38298 -26.85873 -25.61736 -24.65497 -23.78568 -23.42489 -21.81991 -20.96080 -19.65893 -18.60179 -18.00484 -17.64629 -17.37039 -17.09464 -17.05979 -16.91493 -16.33913 -16.26432 -15.98222 -15.82681 -15.50839 -15.24825 -15.01950 -14.68223 -14.00617 -13.65501 -13.50762 -13.43897 -13.22165 -13.16059 -12.86992 -12.78720 -12.62713 -12.52565 -12.46250 -12.08227 -11.84873 -11.73830 -11.59640 -11.22019 -10.81249 -10.68672 -10.48801 -10.01045 -9.42829 -9.15310 -8.47013 -8.31251 -6.36886 -0.59899 -0.19595 0.47977 0.80663 1.16092 1.40316 1.45453 1.50199 1.56682 1.66998 2.21999 2.45025 2.57555 2.86275 2.93687 3.10468 3.24920 3.57955 3.64636 3.96971 4.07975 4.16321 4.26224 4.30530 4.46070 4.53780 4.59593 4.61302 4.63510 4.65459 4.77739 4.85619 4.98446 5.05755 5.17579 5.19579 5.24711 5.25617 5.41717 5.56276 5.97974 6.05643 6.24519 6.41219 6.63475 6.92182 7.38199 7.83153 8.56670 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013846 B = 0.003786 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.816065 B = 7394.782755 C = 8479.936248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.062 3.938 4 C 0.120 3.880 5 N -0.435 5.435 6 C -0.331 4.331 7 H 0.101 0.899 8 C 0.040 3.960 9 N -0.867 5.867 10 Si 0.947 3.053 11 H -0.247 1.247 12 H -0.269 1.269 13 H -0.264 1.264 14 C 0.538 3.462 15 O -0.625 6.625 16 C -0.239 4.239 17 C -0.030 4.030 18 C -0.085 4.085 19 C -0.066 4.066 20 N -0.519 5.519 21 C 0.262 3.738 22 C -0.124 4.124 23 C -0.049 4.049 24 C -0.143 4.143 25 C 0.053 3.947 26 N -0.366 5.366 27 S 0.287 5.713 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.029 0.971 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.282 0.718 36 H 0.147 0.853 37 H 0.171 0.829 38 H 0.194 0.806 39 H 0.199 0.801 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.707 1.740 -15.577 15.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.016 4.016 4 C -0.003 4.003 5 N -0.152 5.152 6 C -0.468 4.468 7 H 0.118 0.882 8 C -0.170 4.170 9 N -0.500 5.500 10 Si 0.768 3.232 11 H -0.170 1.170 12 H -0.194 1.194 13 H -0.188 1.188 14 C 0.330 3.670 15 O -0.515 6.515 16 C -0.360 4.360 17 C -0.066 4.066 18 C -0.196 4.196 19 C -0.307 4.307 20 N -0.243 5.243 21 C 0.015 3.985 22 C -0.145 4.145 23 C -0.072 4.072 24 C -0.165 4.165 25 C -0.071 4.071 26 N -0.041 5.041 27 S 0.556 5.444 28 H 0.113 0.887 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.165 0.835 37 H 0.188 0.812 38 H 0.211 0.789 39 H 0.216 0.784 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.274 0.088 -14.367 14.546 hybrid contribution -0.248 1.675 -0.242 1.710 sum -2.521 1.763 -14.608 14.929 Atomic orbital electron populations 1.22882 0.80644 1.03381 1.00171 1.88053 1.20439 1.27761 1.95315 1.22858 0.94412 0.84691 0.99626 1.21465 0.91302 0.98086 0.89480 1.43301 1.56724 1.07180 1.08016 1.19335 1.27195 0.83111 1.17193 0.88223 1.26286 0.93141 1.03473 0.94114 1.69838 1.27830 1.38593 1.13773 0.85523 0.79300 0.78158 0.80211 1.16959 1.19359 1.18822 1.16411 0.80256 0.85986 0.84331 1.90638 1.59662 1.14507 1.86696 1.22721 1.16836 0.99127 0.97270 1.18878 1.00176 0.99839 0.87735 1.18522 1.20068 0.96922 0.84077 1.27316 1.04055 0.94097 1.05238 1.70348 1.27145 1.30803 0.96046 1.21888 1.00149 0.79531 0.96898 1.20751 1.04658 1.03577 0.85548 1.21741 0.93041 0.90432 1.02033 1.21474 1.01645 1.00595 0.92793 1.22530 1.01313 0.92332 0.90902 1.42661 1.45645 1.10486 1.05329 1.85943 1.66475 1.03816 0.88203 0.88734 0.92803 0.94569 0.91025 0.95222 0.88338 0.91981 0.90822 0.83508 0.81156 0.78884 0.78377 0.80262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.40 -16.36 10.43 -148.98 -1.55 -17.91 16 3 C 0.06 2.52 6.24 71.98 0.45 2.97 16 4 C 0.12 5.75 5.26 86.38 0.45 6.20 16 5 N -0.44 -22.47 2.41 -645.52 -1.56 -24.03 16 6 C -0.33 -16.78 6.24 84.07 0.52 -16.25 16 7 H 0.10 5.05 5.54 -15.81 -0.09 4.97 16 8 C 0.04 1.95 5.34 84.92 0.45 2.41 16 9 N -0.87 -44.53 11.38 21.67 0.25 -44.29 16 10 Si 0.95 39.09 29.56 68.60 2.03 41.12 16 11 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 12 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 13 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 14 C 0.54 28.21 7.39 85.09 0.63 28.84 16 15 O -0.62 -34.36 16.31 -4.81 -0.08 -34.43 16 16 C -0.24 -11.47 6.09 22.62 0.14 -11.33 16 17 C -0.03 -1.27 9.82 21.82 0.21 -1.06 16 18 C -0.08 -3.45 7.44 38.07 0.28 -3.17 16 19 C -0.07 -2.92 8.33 84.48 0.70 -2.22 16 20 N -0.52 -21.61 11.30 -188.85 -2.13 -23.74 16 21 C 0.26 8.74 7.78 134.18 1.04 9.78 16 22 C -0.12 -2.61 10.11 22.45 0.23 -2.38 16 23 C -0.05 -0.58 10.06 22.30 0.22 -0.36 16 24 C -0.14 -1.76 10.00 22.08 0.22 -1.54 16 25 C 0.05 1.12 10.95 83.33 0.91 2.03 16 26 N -0.37 -12.02 2.99 -345.61 -1.03 -13.05 16 27 S 0.29 13.11 18.34 -56.49 -1.04 12.08 16 28 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 32 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.10 4.98 5.97 -2.39 -0.01 4.96 16 34 H 0.06 3.02 7.53 -2.39 -0.02 3.00 16 35 H 0.28 13.47 8.31 -92.71 -0.77 12.70 16 36 H 0.15 5.82 7.96 -2.91 -0.02 5.79 16 37 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 38 H 0.19 0.46 8.06 -2.91 -0.02 0.43 16 39 H 0.20 0.59 8.06 -2.91 -0.02 0.56 16 40 H 0.18 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -74.44 354.36 3.62 -70.82 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 1.02 Total: 17.52 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 7.73 Total: 15.92 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -4.48 Total: -105.11 kcal Atomic # 8 Polarization: -50.72 SS G_CDS: -1.63 Total: -52.35 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Atomic # 16 Polarization: 13.11 SS G_CDS: -1.04 Total: 12.08 kcal Total: -74.44 3.62 -70.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548717776.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.955 kcal (2) G-P(sol) polarization free energy of solvation -74.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds