Wall clock time and date at job start Wed Apr 1 2020 02:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46499 * 119.99896 * 2 1 4 4 C 1.50694 * 109.47144 * 275.00115 * 3 2 1 5 5 H 1.08007 * 120.00294 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00112 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99769 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00415 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46910 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46860 * 120.00398 * 8 6 4 11 11 H 1.48492 * 109.47489 * 240.00503 * 8 6 4 12 12 S 1.65601 * 119.99820 * 180.02562 * 2 1 3 13 13 O 1.42104 * 106.40162 * 156.46120 * 12 2 1 14 14 O 1.42097 * 106.40701 * 23.53573 * 12 2 1 15 15 N 1.65608 * 107.21642 * 269.99450 * 12 2 1 16 16 C 1.47066 * 136.05885 * 269.63309 * 15 12 2 17 17 C 1.53758 * 87.88525 * 152.95940 * 16 15 12 18 18 N 1.46494 * 114.57823 * 272.66098 * 17 16 15 19 19 C 1.34778 * 126.58570 * 8.38836 * 18 17 16 20 20 C 1.36662 * 106.83667 * 179.85088 * 19 18 17 21 21 C 1.47390 * 125.78204 * 180.15928 * 20 19 18 22 22 O 1.21509 * 120.00192 * 0.27963 * 21 20 19 23 23 O 1.34757 * 119.99980 * 180.28149 * 21 20 19 24 24 N 1.34435 * 108.43673 * 0.41777 * 20 19 18 25 25 N 1.28758 * 109.51795 * 359.74230 * 24 20 19 26 26 C 1.47059 * 136.05519 * 90.00188 * 15 12 2 27 27 H 1.09004 * 109.46614 * 269.99557 * 1 2 3 28 28 H 1.08991 * 109.47229 * 29.99848 * 1 2 3 29 29 H 1.08997 * 109.46913 * 150.00046 * 1 2 3 30 30 H 1.09003 * 109.46599 * 35.00508 * 3 2 1 31 31 H 1.08999 * 109.46720 * 154.99982 * 3 2 1 32 32 H 0.97003 * 119.99935 * 179.97438 * 7 6 4 33 33 H 1.08993 * 113.46789 * 267.69306 * 16 15 12 34 34 H 1.09000 * 113.46381 * 38.13373 * 16 15 12 35 35 H 1.09004 * 114.08023 * 139.77730 * 17 16 15 36 36 H 1.08008 * 126.58068 * 359.96260 * 19 18 17 37 37 H 0.96698 * 116.99831 * 179.97438 * 23 21 20 38 38 H 1.09000 * 113.46908 * 321.86708 * 26 15 12 39 39 H 1.09004 * 113.46770 * 92.30630 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 -1.4153 5 1 1.9282 1.1939 -2.2332 6 6 2.9997 2.9509 -1.6663 7 7 3.5025 3.6474 -0.6705 8 14 3.1787 3.5666 -3.4208 9 1 2.5312 2.6068 -4.3507 10 1 2.5270 4.8949 -3.5481 11 1 4.6197 3.6879 -3.7583 12 16 2.2930 -1.4342 -0.0006 13 8 3.5760 -1.1566 -0.5449 14 8 1.4114 -2.4063 -0.5454 15 7 2.5382 -1.8593 1.5810 16 6 3.5819 -1.6263 2.5906 17 6 2.4961 -1.7866 3.6674 18 7 1.7805 -0.5522 3.9996 19 6 1.8738 0.6283 3.3561 20 6 1.0357 1.4963 3.9980 21 6 0.8130 2.9071 3.6344 22 8 1.3983 3.3896 2.6851 23 8 -0.0396 3.6621 4.3548 24 7 0.4531 0.8468 5.0207 25 7 0.8717 -0.3705 5.0517 26 6 1.8112 -2.6414 2.5922 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6501 2.0042 0.5896 31 1 3.1858 1.1176 0.4343 32 1 3.9659 4.4811 -0.8470 33 1 4.3404 -2.4085 2.6193 34 1 4.0099 -0.6247 2.5493 35 1 2.8192 -2.3468 4.5449 36 1 2.4909 0.8461 2.4969 37 1 -0.1526 4.5818 4.0783 38 1 0.7305 -2.5046 2.5523 39 1 2.1029 -3.6913 2.6212 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610115449.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:00 Heat of formation + Delta-G solvation = -5.505498 kcal Electronic energy + Delta-G solvation = -30082.221724 eV Core-core repulsion = 25770.685105 eV Total energy + Delta-G solvation = -4311.536619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.45867 -39.91990 -39.39452 -36.80492 -35.85684 -35.61678 -35.36200 -33.49986 -32.44170 -31.14957 -28.56512 -27.85007 -26.58980 -25.16869 -24.68595 -23.64185 -22.31370 -21.10784 -20.96827 -18.88969 -17.97971 -17.65023 -17.43108 -16.91222 -16.47668 -16.26857 -15.94250 -15.85909 -15.32975 -14.95325 -14.68553 -14.55864 -14.12928 -13.67990 -13.47666 -13.39628 -13.14489 -13.00880 -12.43433 -12.29892 -12.16099 -11.79792 -11.72395 -11.59872 -11.49789 -11.32050 -11.23879 -11.20115 -11.11741 -10.76228 -10.61151 -10.47781 -10.42456 -10.06705 -9.78371 -9.53126 -9.32995 -8.43683 -8.18084 -6.03488 -4.09043 0.82936 0.99469 1.55798 1.71359 3.01313 3.14602 3.16889 3.31124 3.38550 3.43494 3.53673 3.78708 4.13812 4.20955 4.35586 4.45177 4.52969 4.80105 4.96786 5.03417 5.07292 5.15117 5.25209 5.29480 5.33495 5.53881 5.70164 5.82128 5.86142 6.01623 6.21581 6.24604 6.46864 6.63238 7.13284 7.29270 7.52951 7.78711 7.90435 8.14360 8.19032 8.91887 9.55837 11.03588 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.009576 B = 0.006107 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.322543 B = 4584.000122 C = 6676.849568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.992 5.992 3 C 0.253 3.747 4 C -0.534 4.534 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.881 5.881 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 S 2.794 3.206 13 O -0.950 6.950 14 O -0.986 6.986 15 N -1.059 6.059 16 C 0.124 3.876 17 C 0.103 3.897 18 N -0.342 5.342 19 C 0.119 3.881 20 C -0.085 4.085 21 C 0.557 3.443 22 O -0.468 6.468 23 O -0.506 6.506 24 N -0.183 5.183 25 N -0.062 5.062 26 C 0.125 3.875 27 H 0.033 0.967 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.030 0.970 32 H 0.262 0.738 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.143 0.857 36 H 0.207 0.793 37 H 0.415 0.585 38 H 0.087 0.913 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.774 -9.259 12.650 15.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.835 5.835 3 C 0.131 3.869 4 C -0.573 4.573 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.519 5.519 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 S 2.803 3.197 13 O -0.934 6.934 14 O -0.970 6.970 15 N -0.898 5.898 16 C -0.003 4.003 17 C -0.002 4.002 18 N -0.126 5.126 19 C -0.037 4.037 20 C -0.222 4.222 21 C 0.396 3.604 22 O -0.351 6.351 23 O -0.318 6.318 24 N -0.058 5.058 25 N -0.043 5.043 26 C -0.002 4.002 27 H 0.052 0.948 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.136 0.864 34 H 0.110 0.890 35 H 0.160 0.840 36 H 0.223 0.777 37 H 0.273 0.727 38 H 0.105 0.895 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.896 -10.462 12.695 16.703 hybrid contribution 0.512 1.638 -1.821 2.502 sum -2.384 -8.824 10.874 14.205 Atomic orbital electron populations 1.21336 0.79873 1.03729 0.99961 1.57728 1.14533 1.23366 1.87922 1.19210 0.90566 0.78639 0.98466 1.21401 1.36760 1.06577 0.92573 0.92254 1.24913 0.95180 0.96441 0.97244 1.69957 1.36537 1.14950 1.30496 0.86513 0.77920 0.78574 0.84841 1.19766 1.20968 1.20859 1.01724 0.73639 0.72887 0.71418 1.93648 1.40618 1.84928 1.74192 1.93536 1.67409 1.60660 1.75435 1.61324 1.32158 1.66244 1.30027 1.22901 0.90797 1.04615 0.81975 1.23082 0.94258 0.83181 0.99673 1.50013 1.31580 1.09014 1.21976 1.23533 0.97920 0.84585 0.97692 1.20136 1.06486 0.95019 1.00510 1.19117 0.76884 0.84468 0.79897 1.91201 1.45831 1.72044 1.26022 1.84576 1.60732 1.28543 1.57925 1.74743 1.16484 0.99506 1.15036 1.82025 1.05531 1.10875 1.05820 1.22812 0.98702 0.96113 0.82563 0.94820 0.89949 0.91538 0.93140 0.95186 0.92786 0.86438 0.88951 0.83977 0.77680 0.72694 0.89496 0.87046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.67 10.68 59.85 0.64 2.31 16 2 N -0.99 -19.65 3.23 -123.05 -0.40 -20.05 16 3 C 0.25 6.03 3.76 -5.20 -0.02 6.01 16 4 C -0.53 -14.72 9.38 -34.44 -0.32 -15.04 16 5 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 6 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 7 N -0.88 -25.37 13.29 55.43 0.74 -24.63 16 8 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 S 2.79 51.96 6.64 -107.50 -0.71 51.25 16 13 O -0.95 -21.36 17.11 -57.17 -0.98 -22.34 16 14 O -0.99 -19.64 16.74 -57.17 -0.96 -20.59 16 15 N -1.06 -13.43 4.05 -125.06 -0.51 -13.93 16 16 C 0.12 1.11 7.93 -8.38 -0.07 1.05 16 17 C 0.10 0.81 5.46 -67.68 -0.37 0.44 16 18 N -0.34 -4.05 3.85 -54.24 -0.21 -4.26 16 19 C 0.12 1.72 10.20 -16.83 -0.17 1.55 16 20 C -0.08 -1.32 7.02 -83.57 -0.59 -1.91 16 21 C 0.56 8.99 8.33 34.46 0.29 9.28 16 22 O -0.47 -9.27 16.84 -19.27 -0.32 -9.60 16 23 O -0.51 -6.52 13.44 -40.65 -0.55 -7.07 16 24 N -0.18 -2.79 12.39 32.83 0.41 -2.38 16 25 N -0.06 -0.84 13.78 60.35 0.83 -0.01 16 26 C 0.13 1.07 8.54 -8.52 -0.07 1.00 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.08 1.46 8.07 -51.93 -0.42 1.04 16 29 H 0.07 1.08 7.02 -51.93 -0.36 0.71 16 30 H 0.05 1.26 7.28 -51.93 -0.38 0.88 16 31 H 0.03 0.75 7.22 -51.93 -0.37 0.38 16 32 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.92 7.05 -51.93 -0.37 0.56 16 35 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.21 3.23 5.43 -52.48 -0.28 2.95 16 37 H 0.41 3.38 9.11 45.56 0.42 3.80 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 356.98 15.07 5.38 5.38 Total: -1.00 -38.12 356.98 -6.51 -44.63 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -3.43 Total: 0.44 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -0.78 Total: 6.43 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: 0.86 Total: -65.27 kcal Atomic # 8 Polarization: -56.79 SS G_CDS: -2.81 Total: -59.60 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 51.96 SS G_CDS: -0.71 Total: 51.25 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -38.12 -6.51 -44.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610115449.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.122 kcal (2) G-P(sol) polarization free energy of solvation -38.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds