Wall clock time and date at job start Wed Apr 1 2020 02:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46499 * 119.99896 * 2 1 4 4 C 1.50694 * 109.47144 * 275.00115 * 3 2 1 5 5 H 1.08007 * 120.00294 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00112 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99769 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00415 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46910 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46860 * 120.00398 * 8 6 4 11 11 H 1.48492 * 109.47489 * 240.00503 * 8 6 4 12 12 S 1.65601 * 119.99820 * 180.02562 * 2 1 3 13 13 O 1.42104 * 106.40162 * 156.46120 * 12 2 1 14 14 O 1.42097 * 106.40701 * 23.53573 * 12 2 1 15 15 N 1.65608 * 107.21642 * 269.99450 * 12 2 1 16 16 C 1.47066 * 136.05885 * 269.63309 * 15 12 2 17 17 C 1.53758 * 87.88525 * 152.95940 * 16 15 12 18 18 N 1.46494 * 114.57823 * 272.66098 * 17 16 15 19 19 C 1.34778 * 126.58570 * 8.38836 * 18 17 16 20 20 C 1.36662 * 106.83667 * 179.85088 * 19 18 17 21 21 C 1.47390 * 125.78204 * 180.15928 * 20 19 18 22 22 O 1.21509 * 120.00192 * 0.27963 * 21 20 19 23 23 O 1.34757 * 119.99980 * 180.28149 * 21 20 19 24 24 N 1.34435 * 108.43673 * 0.41777 * 20 19 18 25 25 N 1.28758 * 109.51795 * 359.74230 * 24 20 19 26 26 C 1.47059 * 136.05519 * 90.00188 * 15 12 2 27 27 H 1.09004 * 109.46614 * 269.99557 * 1 2 3 28 28 H 1.08991 * 109.47229 * 29.99848 * 1 2 3 29 29 H 1.08997 * 109.46913 * 150.00046 * 1 2 3 30 30 H 1.09003 * 109.46599 * 35.00508 * 3 2 1 31 31 H 1.08999 * 109.46720 * 154.99982 * 3 2 1 32 32 H 0.97003 * 119.99935 * 179.97438 * 7 6 4 33 33 H 1.08993 * 113.46789 * 267.69306 * 16 15 12 34 34 H 1.09000 * 113.46381 * 38.13373 * 16 15 12 35 35 H 1.09004 * 114.08023 * 139.77730 * 17 16 15 36 36 H 1.08008 * 126.58068 * 359.96260 * 19 18 17 37 37 H 0.96698 * 116.99831 * 179.97438 * 23 21 20 38 38 H 1.09000 * 113.46908 * 321.86708 * 26 15 12 39 39 H 1.09004 * 113.46770 * 92.30630 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 -1.4153 5 1 1.9282 1.1939 -2.2332 6 6 2.9997 2.9509 -1.6663 7 7 3.5025 3.6474 -0.6705 8 14 3.1787 3.5666 -3.4208 9 1 2.5312 2.6068 -4.3507 10 1 2.5270 4.8949 -3.5481 11 1 4.6197 3.6879 -3.7583 12 16 2.2930 -1.4342 -0.0006 13 8 3.5760 -1.1566 -0.5449 14 8 1.4114 -2.4063 -0.5454 15 7 2.5382 -1.8593 1.5810 16 6 3.5819 -1.6263 2.5906 17 6 2.4961 -1.7866 3.6674 18 7 1.7805 -0.5522 3.9996 19 6 1.8738 0.6283 3.3561 20 6 1.0357 1.4963 3.9980 21 6 0.8130 2.9071 3.6344 22 8 1.3983 3.3896 2.6851 23 8 -0.0396 3.6621 4.3548 24 7 0.4531 0.8468 5.0207 25 7 0.8717 -0.3705 5.0517 26 6 1.8112 -2.6414 2.5922 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6501 2.0042 0.5896 31 1 3.1858 1.1176 0.4343 32 1 3.9659 4.4811 -0.8470 33 1 4.3404 -2.4085 2.6193 34 1 4.0099 -0.6247 2.5493 35 1 2.8192 -2.3468 4.5449 36 1 2.4909 0.8461 2.4969 37 1 -0.1526 4.5818 4.0783 38 1 0.7305 -2.5046 2.5523 39 1 2.1029 -3.6913 2.6212 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610115449.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:59 Heat of formation + Delta-G solvation = -38.766714 kcal Electronic energy + Delta-G solvation = -30083.664039 eV Core-core repulsion = 25770.685105 eV Total energy + Delta-G solvation = -4312.978934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.51406 -40.96760 -40.44384 -38.36496 -37.31297 -37.04513 -36.94165 -34.53715 -34.48895 -32.27256 -29.70474 -29.53335 -27.33426 -26.85211 -25.82448 -24.74408 -24.13670 -22.22486 -21.96516 -20.05706 -19.15670 -18.90266 -18.70302 -18.36330 -18.25087 -17.50805 -17.29102 -17.03994 -16.53781 -16.37575 -16.00053 -15.64109 -15.48182 -15.07544 -14.91432 -14.67359 -14.33819 -14.07501 -14.01118 -13.74233 -13.44025 -13.36259 -13.25235 -13.06008 -12.98283 -12.68815 -12.57310 -12.54825 -12.51957 -12.41924 -12.14199 -11.97630 -11.82692 -11.73618 -11.36523 -10.61459 -10.55913 -10.32993 -9.86959 -8.15799 -6.28575 -0.55847 -0.10917 0.38731 0.79702 1.37176 1.38883 1.50119 1.89571 1.92915 1.97860 2.37131 2.46094 2.75197 3.07851 3.12304 3.14542 3.33153 3.69747 3.88493 3.95569 3.97799 4.16574 4.38181 4.51056 4.54371 4.55208 4.58872 4.64280 4.71683 4.74810 4.96156 5.16703 5.22102 5.32719 5.45939 5.58790 5.67493 5.87823 6.12807 6.69184 6.78302 7.03558 7.39448 8.89921 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.009576 B = 0.006107 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.322543 B = 4584.000122 C = 6676.849568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -1.003 6.003 3 C 0.278 3.722 4 C -0.555 4.555 5 H 0.048 0.952 6 C 0.017 3.983 7 N -0.908 5.908 8 Si 0.950 3.050 9 H -0.272 1.272 10 H -0.273 1.273 11 H -0.278 1.278 12 S 2.814 3.186 13 O -0.998 6.998 14 O -1.004 7.004 15 N -1.070 6.070 16 C 0.119 3.881 17 C 0.107 3.893 18 N -0.327 5.327 19 C 0.115 3.885 20 C -0.101 4.101 21 C 0.564 3.436 22 O -0.515 6.515 23 O -0.497 6.497 24 N -0.198 5.198 25 N -0.052 5.052 26 C 0.126 3.874 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.036 0.964 31 H 0.015 0.985 32 H 0.265 0.735 33 H 0.164 0.836 34 H 0.076 0.924 35 H 0.199 0.801 36 H 0.191 0.809 37 H 0.434 0.566 38 H 0.081 0.919 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.832 -11.328 14.080 18.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.844 5.844 3 C 0.155 3.845 4 C -0.594 4.594 5 H 0.066 0.934 6 C -0.184 4.184 7 N -0.547 5.547 8 Si 0.776 3.224 9 H -0.197 1.197 10 H -0.199 1.199 11 H -0.203 1.203 12 S 2.825 3.175 13 O -0.982 6.982 14 O -0.988 6.988 15 N -0.913 5.913 16 C -0.007 4.007 17 C 0.004 3.996 18 N -0.111 5.111 19 C -0.043 4.043 20 C -0.237 4.237 21 C 0.405 3.595 22 O -0.402 6.402 23 O -0.311 6.311 24 N -0.073 5.073 25 N -0.033 5.033 26 C 0.001 3.999 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.181 0.819 34 H 0.094 0.906 35 H 0.215 0.785 36 H 0.208 0.792 37 H 0.295 0.705 38 H 0.099 0.901 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.994 -12.537 14.136 19.130 hybrid contribution 0.509 2.154 -2.125 3.068 sum -2.485 -10.383 12.010 16.070 Atomic orbital electron populations 1.21413 0.78570 1.03582 1.01279 1.57634 1.15452 1.22453 1.88904 1.18617 0.89956 0.79927 0.96033 1.21781 1.36669 1.06842 0.94098 0.93359 1.25672 0.95022 0.96749 1.00923 1.70059 1.37119 1.15286 1.32187 0.85635 0.78031 0.78303 0.80480 1.19657 1.19881 1.20340 1.00685 0.72297 0.72177 0.72368 1.93580 1.42629 1.85467 1.76552 1.93502 1.67685 1.60622 1.76986 1.60792 1.34620 1.66797 1.29092 1.23387 0.91259 1.05538 0.80480 1.23583 0.93026 0.81591 1.01410 1.50325 1.30754 1.09374 1.20644 1.23292 0.97834 0.85669 0.97527 1.20179 1.07332 0.95007 1.01221 1.19270 0.76227 0.84906 0.79101 1.91186 1.47860 1.73053 1.28128 1.84542 1.59460 1.29954 1.57099 1.74734 1.17208 1.00077 1.15255 1.81924 1.05322 1.10174 1.05854 1.23297 0.98336 0.98018 0.80267 0.92731 0.91200 0.90524 0.94633 0.96734 0.92633 0.81902 0.90582 0.78458 0.79209 0.70451 0.90094 0.82402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.36 10.68 127.77 1.36 4.73 16 2 N -1.00 -40.57 3.23 -543.23 -1.75 -42.32 16 3 C 0.28 13.82 3.76 85.63 0.32 14.14 16 4 C -0.55 -31.59 9.38 25.60 0.24 -31.35 16 5 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 6 C 0.02 0.98 5.46 84.65 0.46 1.45 16 7 N -0.91 -53.67 13.29 21.45 0.28 -53.38 16 8 Si 0.95 45.28 29.54 68.60 2.03 47.31 16 9 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 S 2.81 104.32 6.64 -56.49 -0.38 103.94 16 13 O -1.00 -45.79 17.11 -128.00 -2.19 -47.98 16 14 O -1.00 -39.28 16.74 -128.00 -2.14 -41.42 16 15 N -1.07 -24.85 4.05 -549.59 -2.23 -27.08 16 16 C 0.12 1.77 7.93 83.26 0.66 2.43 16 17 C 0.11 1.22 5.46 45.55 0.25 1.47 16 18 N -0.33 -6.97 3.85 -325.50 -1.25 -8.22 16 19 C 0.11 3.27 10.20 83.87 0.86 4.13 16 20 C -0.10 -3.14 7.02 40.79 0.29 -2.85 16 21 C 0.56 18.66 8.33 70.23 0.59 19.24 16 22 O -0.52 -21.44 16.84 19.81 0.33 -21.11 16 23 O -0.50 -12.75 13.44 -56.68 -0.76 -13.51 16 24 N -0.20 -5.81 12.39 -50.04 -0.62 -6.43 16 25 N -0.05 -1.29 13.78 37.02 0.51 -0.78 16 26 C 0.13 1.62 8.54 83.17 0.71 2.33 16 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.07 2.55 8.07 -2.39 -0.02 2.53 16 29 H 0.08 2.47 7.02 -2.39 -0.02 2.45 16 30 H 0.04 1.88 7.28 -2.39 -0.02 1.86 16 31 H 0.01 0.77 7.22 -2.39 -0.02 0.76 16 32 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 33 H 0.16 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.44 7.05 -2.39 -0.02 1.42 16 35 H 0.20 0.30 8.14 -2.38 -0.02 0.28 16 36 H 0.19 6.21 5.43 -2.91 -0.02 6.19 16 37 H 0.43 6.98 9.11 -74.06 -0.67 6.31 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.16 0.71 8.14 -2.38 -0.02 0.69 16 Total: -1.00 -86.33 356.98 -1.98 -88.31 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 0.45 Total: 6.96 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 5.73 Total: 15.71 kcal Atomic # 7 Polarization: -133.16 SS G_CDS: -5.06 Total: -138.22 kcal Atomic # 8 Polarization: -119.25 SS G_CDS: -4.76 Total: -124.01 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 16 Polarization: 104.32 SS G_CDS: -0.38 Total: 103.94 kcal Total: -86.33 -1.98 -88.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610115449.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.544 kcal (2) G-P(sol) polarization free energy of solvation -86.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds