Wall clock time and date at job start Wed Apr 1 2020 03:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81009 * 1 3 3 C 1.76205 * 99.99623 * 2 1 4 4 N 1.32485 * 119.15765 * 180.02562 * 3 2 1 5 5 C 1.32290 * 120.79053 * 179.97438 * 4 3 2 6 6 C 1.39026 * 119.13725 * 359.97438 * 5 4 3 7 7 O 1.36035 * 120.76813 * 179.97438 * 6 5 4 8 8 C 1.42903 * 116.99762 * 184.12135 * 7 6 5 9 9 C 1.50695 * 109.46713 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00182 * 55.14625 * 9 8 7 11 11 N 1.34777 * 119.99797 * 235.14488 * 9 8 7 12 12 C 1.37148 * 119.99909 * 180.67377 * 11 9 8 13 13 H 1.07997 * 119.99693 * 230.71533 * 12 11 9 14 14 C 1.38884 * 119.99999 * 50.71606 * 12 11 9 15 15 N 1.31419 * 120.00190 * 339.30127 * 14 12 11 16 16 Si 1.86801 * 119.99758 * 159.29886 * 14 12 11 17 17 H 1.48504 * 109.46819 * 90.00181 * 16 14 12 18 18 H 1.48496 * 109.47189 * 209.99711 * 16 14 12 19 19 H 1.48496 * 109.47520 * 330.00096 * 16 14 12 20 20 C 1.39792 * 120.00287 * 0.67422 * 11 9 8 21 21 C 1.38956 * 120.07787 * 126.35628 * 20 11 9 22 22 C 1.38080 * 119.92031 * 179.97438 * 21 20 11 23 23 C 1.38306 * 120.07725 * 0.02562 * 22 21 20 24 24 C 1.38311 * 120.15841 * 359.97438 * 23 22 21 25 25 C 1.38079 * 120.07449 * 359.97438 * 24 23 22 26 26 C 1.39034 * 118.46456 * 0.25686 * 6 5 4 27 27 N 1.32289 * 119.13273 * 359.48766 * 26 6 5 28 28 H 1.08995 * 109.46858 * 300.00077 * 1 2 3 29 29 H 1.09001 * 109.47090 * 59.99657 * 1 2 3 30 30 H 1.08998 * 109.46653 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.43186 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47249 * 59.97761 * 8 7 6 33 33 H 1.08997 * 109.47135 * 299.97627 * 8 7 6 34 34 H 0.97008 * 120.00159 * 184.39246 * 15 14 12 35 35 H 1.08000 * 120.04219 * 359.71205 * 21 20 11 36 36 H 1.08003 * 119.96000 * 179.97438 * 22 21 20 37 37 H 1.08007 * 119.92529 * 179.97438 * 23 22 21 38 38 H 1.08000 * 119.96047 * 180.02562 * 24 23 22 39 39 H 1.08007 * 120.03761 * 179.97438 * 25 24 23 40 40 H 1.07999 * 120.43091 * 179.72986 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 3.3674 2.1702 -0.0005 5 6 3.6341 3.4659 -0.0010 6 6 2.5811 4.3737 -0.0016 7 8 2.8173 5.7134 -0.0016 8 6 1.6792 6.5728 0.0893 9 6 2.1326 8.0098 0.0758 10 8 2.8255 8.4186 -0.8317 11 7 1.7680 8.8408 1.0723 12 6 2.1691 10.1522 1.0529 13 1 2.6403 10.5856 1.9227 14 6 1.9694 10.9227 -0.0852 15 7 1.7872 10.3406 -1.2492 16 14 1.9596 12.7866 0.0388 17 1 3.3384 13.3028 -0.1557 18 1 1.0688 13.3477 -1.0085 19 1 1.4641 13.1911 1.3789 20 6 0.9810 8.3662 2.1256 21 6 1.3983 8.5394 3.4397 22 6 0.6181 8.0698 4.4777 23 6 -0.5771 7.4271 4.2106 24 6 -0.9955 7.2529 2.9039 25 6 -0.2209 7.7209 1.8610 26 6 1.2811 3.8807 0.0039 27 7 1.0887 2.5719 -0.0009 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 4.6565 3.8140 -0.0010 32 1 1.1435 6.3695 1.0166 33 1 1.0188 6.3921 -0.7588 34 1 1.7114 10.8776 -2.0535 35 1 2.3337 9.0371 3.6488 36 1 0.9420 8.2037 5.4992 37 1 -1.1852 7.0603 5.0244 38 1 -1.9296 6.7509 2.6990 39 1 -0.5480 7.5842 0.8408 40 1 0.4395 4.5574 0.0081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001613848090.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:49 Heat of formation + Delta-G solvation = 44.394466 kcal Electronic energy + Delta-G solvation = -27221.580800 eV Core-core repulsion = 23323.057269 eV Total energy + Delta-G solvation = -3898.523531 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.19460 -39.77990 -38.37965 -37.32811 -34.32146 -33.93468 -32.30434 -31.15239 -30.64025 -29.15874 -28.77882 -28.17813 -25.13921 -24.54318 -23.85593 -22.21560 -21.87227 -19.78343 -18.69739 -18.09884 -18.01302 -17.45784 -16.48319 -16.09751 -15.65240 -15.42374 -15.12565 -14.68816 -14.49977 -14.35556 -14.17137 -14.03257 -13.87759 -13.51369 -13.27548 -12.97262 -12.84034 -12.77329 -12.48792 -12.07725 -11.77268 -11.61921 -11.45405 -11.05286 -10.99256 -10.95619 -10.77930 -10.73781 -10.72045 -10.32373 -9.40455 -9.34493 -9.13722 -8.76728 -8.53873 -8.12768 -7.67404 -7.27944 -6.12209 -4.19707 0.77302 0.86971 1.13872 1.75652 1.79932 1.99577 2.85176 3.17309 3.24198 3.27314 3.53266 3.95633 4.06017 4.09023 4.22202 4.46630 4.52688 4.62602 4.83865 4.94512 4.99921 5.01677 5.24736 5.28723 5.29926 5.40068 5.45981 5.59572 5.60735 5.66805 5.83440 5.89177 5.98195 6.31500 6.41839 6.63223 6.77525 6.88256 7.01804 7.15832 7.32463 7.50057 7.71149 8.08329 8.76706 8.83301 9.31872 9.93895 10.72576 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.014099 B = 0.003087 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.499512 B = 9068.503692 C =10330.435300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.010 6.010 3 C 0.244 3.756 4 N -0.463 5.463 5 C 0.136 3.864 6 C 0.040 3.960 7 O -0.275 6.275 8 C 0.027 3.973 9 C 0.475 3.525 10 O -0.450 6.450 11 N -0.414 5.414 12 C -0.358 4.358 13 H 0.089 0.911 14 C 0.055 3.945 15 N -0.802 5.802 16 Si 0.911 3.089 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.268 1.268 20 C 0.180 3.820 21 C -0.135 4.135 22 C -0.103 4.103 23 C -0.156 4.156 24 C -0.104 4.104 25 C -0.161 4.161 26 C 0.077 3.923 27 N -0.487 5.487 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.183 0.817 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.263 0.737 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.398 -14.324 5.883 16.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.222 5.778 3 C -0.131 4.131 4 N -0.179 5.179 5 C -0.035 4.035 6 C -0.015 4.015 7 O -0.184 6.184 8 C -0.051 4.051 9 C 0.260 3.740 10 O -0.319 6.319 11 N -0.133 5.133 12 C -0.483 4.483 13 H 0.107 0.893 14 C -0.157 4.157 15 N -0.434 5.434 16 Si 0.737 3.263 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.193 1.193 20 C 0.085 3.915 21 C -0.156 4.156 22 C -0.122 4.122 23 C -0.175 4.175 24 C -0.123 4.123 25 C -0.182 4.182 26 C -0.093 4.093 27 N -0.205 5.205 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.200 0.800 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.142 0.858 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -4.315 -15.901 5.047 17.232 hybrid contribution -1.128 3.139 -0.065 3.336 sum -5.443 -12.763 4.982 14.742 Atomic orbital electron populations 1.23523 0.94295 1.06101 1.07177 1.85660 1.06676 0.93639 1.91846 1.24643 0.87193 1.00447 1.00858 1.68512 1.21149 1.15174 1.13057 1.22771 0.99644 0.86093 0.95039 1.20932 0.95937 0.86325 0.98275 1.86225 1.34376 1.11217 1.86604 1.23470 0.87718 0.91291 1.02650 1.19403 0.85174 0.84028 0.85420 1.90661 1.34454 1.74340 1.32433 1.41095 1.44717 1.09277 1.18167 1.18996 1.43570 0.83142 1.02612 0.89334 1.25581 0.95548 0.99670 0.94856 1.70359 1.40247 1.35207 0.97606 0.86214 0.78301 0.83503 0.78310 1.20332 1.20828 1.19264 1.18331 0.90213 0.93440 0.89521 1.21180 1.00538 1.02101 0.91740 1.20956 0.94757 0.98029 0.98422 1.20934 0.97593 1.02644 0.96326 1.20891 0.99003 0.99785 0.92598 1.21289 0.93951 1.03600 0.99353 1.23392 0.95975 0.92169 0.97762 1.68553 1.34521 1.03446 1.13960 0.89189 0.89213 0.87801 0.80017 0.89927 0.90098 0.92658 0.85848 0.86518 0.86822 0.86528 0.86398 0.80847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.62 101.05 0.97 -0.20 16 2 S -0.01 -0.11 22.89 -107.50 -2.46 -2.57 16 3 C 0.24 3.50 7.85 -90.96 -0.71 2.79 16 4 N -0.46 -6.96 10.39 -13.36 -0.14 -7.10 16 5 C 0.14 1.97 11.26 -17.06 -0.19 1.77 16 6 C 0.04 0.62 6.72 -38.99 -0.26 0.36 16 7 O -0.28 -5.05 10.13 -29.03 -0.29 -5.35 16 8 C 0.03 0.51 4.05 36.00 0.15 0.65 16 9 C 0.47 11.55 6.63 -10.99 -0.07 11.48 16 10 O -0.45 -12.92 14.01 -3.62 -0.05 -12.97 16 11 N -0.41 -9.91 2.71 -58.98 -0.16 -10.07 16 12 C -0.36 -9.37 8.67 -14.93 -0.13 -9.50 16 13 H 0.09 2.24 7.68 -52.49 -0.40 1.83 16 14 C 0.06 1.48 5.32 -17.49 -0.09 1.38 16 15 N -0.80 -22.64 10.13 55.49 0.56 -22.08 16 16 Si 0.91 20.32 29.60 -169.99 -5.03 15.28 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 20 C 0.18 3.57 4.84 -83.70 -0.41 3.17 16 21 C -0.14 -2.40 9.52 -39.37 -0.37 -2.78 16 22 C -0.10 -1.50 10.04 -39.61 -0.40 -1.89 16 23 C -0.16 -2.11 10.04 -39.53 -0.40 -2.51 16 24 C -0.10 -1.47 10.04 -39.61 -0.40 -1.87 16 25 C -0.16 -2.75 7.32 -39.37 -0.29 -3.04 16 26 C 0.08 1.09 10.31 -17.06 -0.18 0.91 16 27 N -0.49 -6.91 9.12 -13.36 -0.12 -7.03 16 28 H 0.09 0.77 8.11 -51.92 -0.42 0.35 16 29 H 0.09 0.78 8.11 -51.92 -0.42 0.35 16 30 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.18 2.21 8.06 -52.49 -0.42 1.78 16 32 H 0.08 1.38 4.58 -51.93 -0.24 1.14 16 33 H 0.08 1.37 7.55 -51.93 -0.39 0.98 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.12 2.19 7.82 -52.49 -0.41 1.78 16 36 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 37 H 0.11 1.22 8.06 -52.48 -0.42 0.80 16 38 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 39 H 0.12 1.97 7.35 -52.48 -0.39 1.58 16 40 H 0.17 2.13 6.46 -52.49 -0.34 1.79 16 LS Contribution 358.88 15.07 5.41 5.41 Total: -1.00 -32.33 358.88 -9.33 -41.66 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.26 Total: 4.08 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -2.78 Total: 0.73 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.14 Total: -46.28 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.34 Total: -18.32 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.28 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -2.46 Total: -2.57 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.33 -9.33 -41.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001613848090.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.053 kcal (2) G-P(sol) polarization free energy of solvation -32.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds