Wall clock time and date at job start Wed Apr 1 2020 03:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81009 * 1 3 3 C 1.76205 * 99.99623 * 2 1 4 4 N 1.32485 * 119.15765 * 180.02562 * 3 2 1 5 5 C 1.32290 * 120.79053 * 179.97438 * 4 3 2 6 6 C 1.39026 * 119.13725 * 359.97438 * 5 4 3 7 7 O 1.36035 * 120.76813 * 179.97438 * 6 5 4 8 8 C 1.42903 * 116.99762 * 184.12135 * 7 6 5 9 9 C 1.50695 * 109.46713 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00182 * 55.14625 * 9 8 7 11 11 N 1.34777 * 119.99797 * 235.14488 * 9 8 7 12 12 C 1.37148 * 119.99909 * 180.67377 * 11 9 8 13 13 H 1.07997 * 119.99693 * 230.71533 * 12 11 9 14 14 C 1.38884 * 119.99999 * 50.71606 * 12 11 9 15 15 N 1.31419 * 120.00190 * 339.30127 * 14 12 11 16 16 Si 1.86801 * 119.99758 * 159.29886 * 14 12 11 17 17 H 1.48504 * 109.46819 * 90.00181 * 16 14 12 18 18 H 1.48496 * 109.47189 * 209.99711 * 16 14 12 19 19 H 1.48496 * 109.47520 * 330.00096 * 16 14 12 20 20 C 1.39792 * 120.00287 * 0.67422 * 11 9 8 21 21 C 1.38956 * 120.07787 * 126.35628 * 20 11 9 22 22 C 1.38080 * 119.92031 * 179.97438 * 21 20 11 23 23 C 1.38306 * 120.07725 * 0.02562 * 22 21 20 24 24 C 1.38311 * 120.15841 * 359.97438 * 23 22 21 25 25 C 1.38079 * 120.07449 * 359.97438 * 24 23 22 26 26 C 1.39034 * 118.46456 * 0.25686 * 6 5 4 27 27 N 1.32289 * 119.13273 * 359.48766 * 26 6 5 28 28 H 1.08995 * 109.46858 * 300.00077 * 1 2 3 29 29 H 1.09001 * 109.47090 * 59.99657 * 1 2 3 30 30 H 1.08998 * 109.46653 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.43186 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47249 * 59.97761 * 8 7 6 33 33 H 1.08997 * 109.47135 * 299.97627 * 8 7 6 34 34 H 0.97008 * 120.00159 * 184.39246 * 15 14 12 35 35 H 1.08000 * 120.04219 * 359.71205 * 21 20 11 36 36 H 1.08003 * 119.96000 * 179.97438 * 22 21 20 37 37 H 1.08007 * 119.92529 * 179.97438 * 23 22 21 38 38 H 1.08000 * 119.96047 * 180.02562 * 24 23 22 39 39 H 1.08007 * 120.03761 * 179.97438 * 25 24 23 40 40 H 1.07999 * 120.43091 * 179.72986 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 3.3674 2.1702 -0.0005 5 6 3.6341 3.4659 -0.0010 6 6 2.5811 4.3737 -0.0016 7 8 2.8173 5.7134 -0.0016 8 6 1.6792 6.5728 0.0893 9 6 2.1326 8.0098 0.0758 10 8 2.8255 8.4186 -0.8317 11 7 1.7680 8.8408 1.0723 12 6 2.1691 10.1522 1.0529 13 1 2.6403 10.5856 1.9227 14 6 1.9694 10.9227 -0.0852 15 7 1.7872 10.3406 -1.2492 16 14 1.9596 12.7866 0.0388 17 1 3.3384 13.3028 -0.1557 18 1 1.0688 13.3477 -1.0085 19 1 1.4641 13.1911 1.3789 20 6 0.9810 8.3662 2.1256 21 6 1.3983 8.5394 3.4397 22 6 0.6181 8.0698 4.4777 23 6 -0.5771 7.4271 4.2106 24 6 -0.9955 7.2529 2.9039 25 6 -0.2209 7.7209 1.8610 26 6 1.2811 3.8807 0.0039 27 7 1.0887 2.5719 -0.0009 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 4.6565 3.8140 -0.0010 32 1 1.1435 6.3695 1.0166 33 1 1.0188 6.3921 -0.7588 34 1 1.7114 10.8776 -2.0535 35 1 2.3337 9.0371 3.6488 36 1 0.9420 8.2037 5.4992 37 1 -1.1852 7.0603 5.0244 38 1 -1.9296 6.7509 2.6990 39 1 -0.5480 7.5842 0.8408 40 1 0.4395 4.5574 0.0081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001613848090.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:48 Heat of formation + Delta-G solvation = 25.152082 kcal Electronic energy + Delta-G solvation = -27222.415212 eV Core-core repulsion = 23323.057269 eV Total energy + Delta-G solvation = -3899.357943 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.36550 -41.28454 -39.68422 -38.87774 -36.06935 -35.04449 -34.15330 -32.37752 -31.87910 -30.24678 -29.99067 -29.49068 -26.79863 -25.77214 -25.12830 -23.53015 -23.21020 -21.41752 -19.77905 -19.38629 -19.29338 -19.04685 -17.98248 -17.56268 -16.98746 -16.64956 -16.42652 -16.13899 -15.99487 -15.62443 -15.54617 -15.20020 -15.01678 -14.71621 -14.48835 -14.24974 -14.19551 -13.92779 -13.62567 -13.46110 -13.36850 -13.01825 -12.78987 -12.64896 -12.60122 -12.29085 -12.13886 -12.06226 -11.96078 -11.61319 -10.91239 -10.58895 -10.52970 -10.47455 -9.91302 -9.73464 -8.94234 -8.64575 -8.06217 -6.20968 -0.37384 -0.24961 0.18545 0.49095 0.55135 1.21296 1.37602 1.40292 1.44182 1.51973 2.20453 2.40485 2.52650 2.95742 2.98076 2.99373 3.03676 3.14761 3.48050 3.63605 3.86000 3.92046 4.06496 4.14960 4.20360 4.36895 4.37247 4.39944 4.56054 4.66642 4.72162 4.77186 4.99319 5.00846 5.21643 5.43318 5.49074 5.59286 5.69164 5.72192 5.90983 6.06397 6.22032 6.59400 6.87509 6.99141 7.46390 8.13189 8.75449 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.014099 B = 0.003087 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.499512 B = 9068.503692 C =10330.435300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.006 6.006 3 C 0.234 3.766 4 N -0.479 5.479 5 C 0.137 3.863 6 C 0.018 3.982 7 O -0.299 6.299 8 C 0.048 3.952 9 C 0.460 3.540 10 O -0.515 6.515 11 N -0.425 5.425 12 C -0.373 4.373 13 H 0.086 0.914 14 C 0.002 3.998 15 N -0.838 5.838 16 Si 0.979 3.021 17 H -0.278 1.278 18 H -0.281 1.281 19 H -0.255 1.255 20 C 0.139 3.861 21 C -0.153 4.153 22 C -0.098 4.098 23 C -0.140 4.140 24 C -0.095 4.095 25 C -0.168 4.168 26 C 0.084 3.916 27 N -0.488 5.488 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.135 0.865 31 H 0.197 0.803 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.258 0.742 35 H 0.109 0.891 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.115 0.885 40 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.038 -16.115 8.295 19.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.226 5.774 3 C -0.141 4.141 4 N -0.195 5.195 5 C -0.033 4.033 6 C -0.036 4.036 7 O -0.209 6.209 8 C -0.030 4.030 9 C 0.247 3.753 10 O -0.389 6.389 11 N -0.144 5.144 12 C -0.499 4.499 13 H 0.104 0.896 14 C -0.205 4.205 15 N -0.472 5.472 16 Si 0.802 3.198 17 H -0.204 1.204 18 H -0.206 1.206 19 H -0.179 1.179 20 C 0.046 3.954 21 C -0.173 4.173 22 C -0.116 4.116 23 C -0.158 4.158 24 C -0.113 4.113 25 C -0.189 4.189 26 C -0.085 4.085 27 N -0.206 5.206 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.153 0.847 31 H 0.214 0.786 32 H 0.122 0.878 33 H 0.111 0.889 34 H 0.067 0.933 35 H 0.127 0.873 36 H 0.166 0.834 37 H 0.174 0.826 38 H 0.172 0.828 39 H 0.133 0.867 40 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -6.986 -17.729 7.525 20.487 hybrid contribution -0.379 3.479 -0.639 3.558 sum -7.364 -14.249 6.886 17.456 Atomic orbital electron populations 1.23646 0.91618 1.08088 1.07065 1.85697 1.09585 0.91171 1.90941 1.25345 0.87124 1.02123 0.99465 1.68621 1.21684 1.15094 1.14143 1.23064 1.00324 0.86024 0.93920 1.21014 0.97031 0.85046 1.00511 1.86164 1.34435 1.12641 1.87669 1.23100 0.87638 0.88115 1.04154 1.20254 0.84216 0.86130 0.84702 1.90605 1.37425 1.76051 1.34828 1.41226 1.45155 1.08777 1.19235 1.19270 1.43564 0.84732 1.02374 0.89596 1.26460 0.95389 1.04249 0.94446 1.70561 1.42168 1.36397 0.98053 0.85186 0.78075 0.77866 0.78680 1.20383 1.20594 1.17905 1.18548 0.91577 0.96270 0.89017 1.21240 1.00970 1.03086 0.91997 1.21312 0.94608 0.96785 0.98898 1.21463 0.96867 1.00241 0.97241 1.21308 0.99519 0.98495 0.91991 1.21348 0.93451 1.03663 1.00389 1.23689 0.95937 0.92602 0.96269 1.68664 1.34224 1.03203 1.14547 0.89136 0.89383 0.84698 0.78600 0.87845 0.88871 0.93275 0.87329 0.83405 0.82640 0.82804 0.86741 0.79038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.62 113.37 1.09 -0.75 16 2 S -0.01 -0.11 22.89 -56.49 -1.29 -1.41 16 3 C 0.23 6.42 7.85 180.47 1.42 7.84 16 4 N -0.48 -14.12 10.39 -196.19 -2.04 -16.16 16 5 C 0.14 3.98 11.26 84.81 0.96 4.94 16 6 C 0.02 0.55 6.72 22.65 0.15 0.70 16 7 O -0.30 -11.35 10.13 -85.17 -0.86 -12.21 16 8 C 0.05 1.84 4.05 71.23 0.29 2.13 16 9 C 0.46 23.61 6.63 87.66 0.58 24.19 16 10 O -0.51 -31.65 14.01 5.75 0.08 -31.57 16 11 N -0.43 -21.31 2.71 -458.91 -1.25 -22.55 16 12 C -0.37 -20.50 8.67 84.02 0.73 -19.78 16 13 H 0.09 4.57 7.68 -2.91 -0.02 4.55 16 14 C 0.00 0.13 5.32 84.91 0.45 0.58 16 15 N -0.84 -49.91 10.13 21.65 0.22 -49.69 16 16 Si 0.98 43.21 29.60 68.60 2.03 45.24 16 17 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 20 C 0.14 5.57 4.84 38.22 0.19 5.75 16 21 C -0.15 -5.37 9.52 22.40 0.21 -5.16 16 22 C -0.10 -2.52 10.04 22.25 0.22 -2.30 16 23 C -0.14 -3.08 10.04 22.30 0.22 -2.85 16 24 C -0.09 -2.29 10.04 22.25 0.22 -2.06 16 25 C -0.17 -5.51 7.32 22.40 0.16 -5.35 16 26 C 0.08 2.31 10.31 84.82 0.87 3.18 16 27 N -0.49 -13.07 9.12 -196.19 -1.79 -14.86 16 28 H 0.09 1.28 8.11 -2.40 -0.02 1.26 16 29 H 0.09 1.29 8.11 -2.39 -0.02 1.27 16 30 H 0.13 1.02 8.14 -2.40 -0.02 1.00 16 31 H 0.20 4.86 8.06 -2.91 -0.02 4.83 16 32 H 0.10 3.44 4.58 -2.39 -0.01 3.43 16 33 H 0.09 3.24 7.55 -2.39 -0.02 3.22 16 34 H 0.26 14.67 8.31 -92.70 -0.77 13.90 16 35 H 0.11 4.01 7.82 -2.91 -0.02 3.98 16 36 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 37 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 38 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 39 H 0.11 3.76 7.35 -2.91 -0.02 3.74 16 40 H 0.19 4.37 6.46 -2.91 -0.02 4.36 16 Total: -1.00 -75.68 358.88 3.95 -71.72 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 1.08 Total: 20.41 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 7.77 Total: 11.07 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -4.85 Total: -103.27 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -0.78 Total: -43.78 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -1.29 Total: -1.41 kcal Total: -75.68 3.95 -71.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001613848090.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.874 kcal (2) G-P(sol) polarization free energy of solvation -75.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds