Wall clock time and date at job start Wed Apr 1 2020 04:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86798 * 119.99876 * 2 1 4 4 H 1.48499 * 109.47330 * 270.00034 * 3 2 1 5 5 H 1.48503 * 109.47420 * 30.00148 * 3 2 1 6 6 H 1.48500 * 109.47313 * 150.00102 * 3 2 1 7 7 C 1.39901 * 120.00390 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00376 * 175.56071 * 7 2 1 9 9 C 1.41154 * 119.99866 * 355.55953 * 7 2 1 10 10 C 1.40870 * 120.16513 * 214.78480 * 9 7 2 11 11 C 1.36371 * 119.83143 * 180.02562 * 10 9 7 12 12 C 1.39488 * 120.16956 * 359.97438 * 11 10 9 13 13 N 1.39233 * 119.83644 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99703 * 35.29014 * 13 12 11 15 15 O 1.21283 * 120.00543 * 355.70452 * 14 13 12 16 16 C 1.50707 * 119.99950 * 175.70846 * 14 13 12 17 17 S 1.80993 * 109.47197 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00133 * 179.97438 * 17 16 14 19 19 N 1.32503 * 119.14693 * 179.97438 * 18 17 16 20 20 C 1.33097 * 120.80115 * 180.02562 * 19 18 17 21 21 N 1.38620 * 120.43743 * 180.02562 * 20 19 18 22 22 C 1.39186 * 119.12843 * 0.27577 * 20 19 18 23 23 C 1.39187 * 118.42955 * 359.48499 * 22 20 19 24 24 N 1.38621 * 120.43692 * 180.21608 * 23 22 20 25 25 N 1.32514 * 119.14354 * 0.02805 * 18 17 16 26 26 C 1.39484 * 120.32812 * 0.25502 * 12 11 10 27 27 C 1.36370 * 120.17032 * 359.48081 * 26 12 11 28 28 H 0.97003 * 120.00862 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.08405 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.91932 * 179.97438 * 11 10 9 31 31 H 0.97000 * 119.99944 * 215.28664 * 13 12 11 32 32 H 1.09007 * 109.46909 * 59.99737 * 16 14 13 33 33 H 1.08999 * 109.46989 * 299.99813 * 16 14 13 34 34 H 0.97006 * 119.99716 * 0.02562 * 21 20 19 35 35 H 0.97002 * 120.00053 * 179.72541 * 21 20 19 36 36 H 1.07997 * 120.78873 * 179.72328 * 22 20 19 37 37 H 0.97004 * 120.00581 * 180.29994 * 24 23 22 38 38 H 0.97003 * 120.00161 * 0.30305 * 24 23 22 39 39 H 1.07996 * 119.91288 * 179.74867 * 26 12 11 40 40 H 1.08005 * 120.08879 * 180.25733 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4901 2.0465 -1.4000 5 1 1.4400 2.6527 0.7001 6 1 3.5401 1.4402 0.7000 7 6 2.0082 -1.2115 -0.0005 8 1 3.0858 -1.2129 -0.0729 9 6 1.3057 -2.4322 0.0936 10 6 1.8649 -3.5186 0.7946 11 6 1.1805 -4.6950 0.8808 12 6 -0.0705 -4.8239 0.2775 13 7 -0.7630 -6.0283 0.3694 14 6 -0.6805 -6.7691 1.4923 15 8 0.0574 -6.4267 2.3919 16 6 -1.5050 -8.0231 1.6301 17 16 -1.1748 -8.7887 3.2365 18 6 -2.2384 -10.1896 3.1322 19 7 -2.2900 -11.0378 4.1489 20 6 -3.0815 -12.1070 4.1049 21 7 -3.1300 -12.9892 5.1731 22 6 -3.8559 -12.3304 2.9702 23 6 -3.7791 -11.4149 1.9246 24 7 -4.5356 -11.5945 0.7770 25 7 -2.9651 -10.3681 2.0386 26 6 -0.6286 -3.7542 -0.4224 27 6 0.0415 -2.5699 -0.5126 28 1 -0.4851 0.8400 0.0004 29 1 2.8337 -3.4204 1.2618 30 1 1.6081 -5.5289 1.4175 31 1 -1.3049 -6.3342 -0.3747 32 1 -1.2416 -8.7203 0.8347 33 1 -2.5632 -7.7719 1.5576 34 1 -2.5851 -12.8290 5.9595 35 1 -3.7121 -13.7642 5.1359 36 1 -4.5041 -13.1917 2.9041 37 1 -4.4739 -10.9548 0.0503 38 1 -5.1267 -12.3597 0.7005 39 1 -1.5959 -3.8628 -0.8903 40 1 -0.3938 -1.7412 -1.0513 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020064807.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:41 Heat of formation + Delta-G solvation = 41.184283 kcal Electronic energy + Delta-G solvation = -25318.701908 eV Core-core repulsion = 21452.331924 eV Total energy + Delta-G solvation = -3866.369984 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.85202 -39.66678 -37.25698 -36.36580 -34.97663 -34.46666 -32.97198 -31.55393 -30.37333 -29.85969 -29.53463 -28.38198 -24.95879 -24.61532 -23.14074 -21.72419 -20.86463 -19.79728 -18.89886 -18.88863 -17.35491 -17.04452 -16.60380 -16.47497 -16.15566 -15.84460 -15.58591 -15.46054 -15.18352 -15.06697 -14.49793 -13.94546 -13.84211 -13.51247 -13.28390 -12.64241 -12.61740 -12.55866 -12.10780 -11.69877 -11.54449 -11.37051 -11.15351 -11.09547 -10.97187 -10.71751 -10.39877 -10.05629 -9.52557 -9.47121 -9.43707 -9.16753 -8.95933 -8.90122 -8.74207 -7.73425 -7.54123 -6.86986 -6.61167 -4.33701 0.87937 1.11952 1.42168 2.02166 2.50825 2.99446 3.06613 3.09601 3.11209 3.15127 3.22262 3.31202 3.68644 3.70561 3.99122 4.61301 4.69096 4.70648 4.96382 5.02191 5.07591 5.14000 5.37788 5.66112 5.69226 6.19561 6.44047 6.45352 6.73488 6.73953 6.90449 6.94852 7.02284 7.07106 7.20045 7.29613 7.54982 7.64498 7.72054 7.84537 8.06510 8.06873 8.22973 8.31870 8.60127 8.69119 8.93505 8.99922 10.29812 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.030921 B = 0.001815 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.327690 B =15426.354051 C =15959.250481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.100 3.900 10 C -0.205 4.205 11 C -0.084 4.084 12 C 0.001 3.999 13 N -0.643 5.643 14 C 0.514 3.486 15 O -0.517 6.517 16 C -0.147 4.147 17 S 0.096 5.904 18 C 0.364 3.636 19 N -0.591 5.591 20 C 0.475 3.525 21 N -0.838 5.838 22 C -0.375 4.375 23 C 0.475 3.525 24 N -0.838 5.838 25 N -0.617 5.617 26 C -0.119 4.119 27 C -0.142 4.142 28 H 0.278 0.722 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.398 0.602 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.408 0.592 35 H 0.410 0.590 36 H 0.133 0.867 37 H 0.407 0.593 38 H 0.410 0.590 39 H 0.092 0.908 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.462 -23.692 1.948 26.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.491 4.491 8 H 0.094 0.906 9 C 0.098 3.902 10 C -0.225 4.225 11 C -0.104 4.104 12 C -0.091 4.091 13 N -0.286 5.286 14 C 0.298 3.702 15 O -0.394 6.394 16 C -0.299 4.299 17 S 0.331 5.669 18 C -0.014 4.014 19 N -0.323 5.323 20 C 0.229 3.771 21 N -0.381 5.381 22 C -0.412 4.412 23 C 0.229 3.771 24 N -0.381 5.381 25 N -0.351 5.351 26 C -0.139 4.139 27 C -0.162 4.162 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.232 0.768 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.238 0.762 35 H 0.240 0.760 36 H 0.151 0.849 37 H 0.237 0.763 38 H 0.240 0.760 39 H 0.110 0.890 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.792 -22.108 3.532 24.436 hybrid contribution -1.918 -1.016 -1.419 2.593 sum -11.709 -23.124 2.114 26.006 Atomic orbital electron populations 1.69753 1.07291 1.28728 1.38072 1.25881 0.94947 1.01187 0.92565 0.86193 0.80267 0.80477 0.79021 1.19542 1.20307 1.18704 1.19506 0.94759 0.90208 1.44589 0.90576 1.17744 0.92290 0.92025 0.88179 1.20811 1.01269 0.94903 1.05496 1.20415 0.92717 0.97923 0.99352 1.17252 0.94252 0.85647 1.11960 1.42821 1.48723 1.21199 1.15820 1.19656 0.83294 0.84313 0.82901 1.90742 1.38656 1.70333 1.39642 1.23716 1.05563 0.99400 1.01265 1.86727 1.46431 1.15061 1.18716 1.24863 0.93724 0.97221 0.85639 1.67955 1.27371 1.06408 1.30599 1.18071 0.86461 0.86397 0.86200 1.42117 1.50282 1.27508 1.18187 1.20995 1.15203 1.07577 0.97413 1.18068 0.85577 0.87528 0.85888 1.42125 1.47328 1.31548 1.17132 1.68366 1.15326 1.24542 1.26857 1.20306 0.98341 0.93079 1.02151 1.21193 0.97302 0.95538 1.02162 0.91130 0.88514 0.87337 0.76833 0.86207 0.86111 0.76245 0.76012 0.84887 0.76328 0.76027 0.89035 0.85001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.12 10.59 55.55 0.59 -20.53 16 2 C 0.07 1.76 5.42 -17.34 -0.09 1.66 16 3 Si 0.92 19.07 29.56 -169.99 -5.03 14.04 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.46 -12.29 9.02 -37.85 -0.34 -12.63 16 8 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 9 C 0.10 2.69 5.55 -106.80 -0.59 2.09 16 10 C -0.20 -5.20 9.74 -39.26 -0.38 -5.58 16 11 C -0.08 -2.01 8.61 -39.79 -0.34 -2.36 16 12 C 0.00 0.03 6.31 -83.57 -0.53 -0.50 16 13 N -0.64 -11.01 5.30 -9.73 -0.05 -11.06 16 14 C 0.51 8.86 7.68 -10.98 -0.08 8.77 16 15 O -0.52 -11.05 13.28 5.55 0.07 -10.98 16 16 C -0.15 -1.92 5.29 36.01 0.19 -1.73 16 17 S 0.10 1.40 21.38 -107.50 -2.30 -0.90 16 18 C 0.36 5.02 7.85 -90.92 -0.71 4.30 16 19 N -0.59 -7.90 10.43 -12.74 -0.13 -8.04 16 20 C 0.47 4.92 7.81 -154.78 -1.21 3.72 16 21 N -0.84 -5.22 9.06 31.18 0.28 -4.93 16 22 C -0.38 -3.37 9.88 -38.88 -0.38 -3.76 16 23 C 0.48 4.72 7.81 -154.78 -1.21 3.51 16 24 N -0.84 -4.90 9.06 31.18 0.28 -4.62 16 25 N -0.62 -7.55 9.16 -12.75 -0.12 -7.67 16 26 C -0.12 -2.67 9.90 -39.79 -0.39 -3.07 16 27 C -0.14 -3.63 8.62 -39.26 -0.34 -3.97 16 28 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 29 H 0.10 2.34 8.06 -52.49 -0.42 1.91 16 30 H 0.11 2.56 6.22 -52.49 -0.33 2.23 16 31 H 0.40 5.21 8.82 -40.82 -0.36 4.85 16 32 H 0.12 1.33 8.11 -51.91 -0.42 0.91 16 33 H 0.12 1.40 8.11 -51.92 -0.42 0.98 16 34 H 0.41 2.29 8.95 -40.82 -0.37 1.93 16 35 H 0.41 1.27 8.84 -40.82 -0.36 0.91 16 36 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.41 2.09 8.95 -40.82 -0.37 1.72 16 38 H 0.41 1.23 8.84 -40.82 -0.36 0.87 16 39 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 40 H 0.13 3.48 6.13 -52.48 -0.32 3.16 16 LS Contribution 361.93 15.07 5.45 5.45 Total: -1.00 -33.69 361.93 -11.48 -45.17 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -4.12 Total: 13.59 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -6.42 Total: -9.53 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.85 Total: -56.85 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.07 Total: -10.98 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.30 Total: -0.90 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.69 -11.48 -45.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020064807.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.356 kcal (2) G-P(sol) polarization free energy of solvation -33.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds