Wall clock time and date at job start Wed Apr 1 2020 03:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47043 * 2 1 4 4 O 1.45199 * 109.47125 * 240.00161 * 2 1 3 5 5 C 1.34808 * 117.00536 * 89.99798 * 4 2 1 6 6 O 1.21536 * 119.99521 * 0.02562 * 5 4 2 7 7 C 1.47282 * 120.00502 * 180.27264 * 5 4 2 8 8 C 1.39290 * 120.28797 * 356.37335 * 7 5 4 9 9 C 1.38201 * 120.09061 * 179.97438 * 8 7 5 10 10 C 1.38840 * 120.68112 * 0.03482 * 9 8 7 11 11 C 1.37606 * 120.58111 * 0.02562 * 10 9 8 12 12 C 1.40708 * 119.88207 * 359.64905 * 11 10 9 13 13 C 1.40867 * 120.32836 * 180.34180 * 12 11 10 14 14 H 1.07998 * 120.00033 * 142.01177 * 13 12 11 15 15 C 1.40304 * 120.00009 * 322.01184 * 13 12 11 16 16 N 1.30614 * 119.99838 * 173.04801 * 15 13 12 17 17 Si 1.86806 * 119.99783 * 353.04737 * 15 13 12 18 18 H 1.48497 * 109.46713 * 89.64789 * 17 15 13 19 19 H 1.48500 * 109.46539 * 209.64450 * 17 15 13 20 20 H 1.48495 * 109.47235 * 329.64462 * 17 15 13 21 21 C 1.50696 * 109.47115 * 120.00032 * 2 1 3 22 22 O 1.21285 * 120.00001 * 119.99963 * 21 2 1 23 23 N 1.34778 * 120.00253 * 299.99934 * 21 2 1 24 24 C 1.46496 * 120.00193 * 179.97438 * 23 21 2 25 25 C 1.52999 * 109.46949 * 180.02562 * 24 23 21 26 26 F 1.39902 * 109.47217 * 59.99823 * 25 24 23 27 27 F 1.39896 * 109.47296 * 180.02562 * 25 24 23 28 28 F 1.39899 * 109.47340 * 299.99919 * 25 24 23 29 29 H 1.08996 * 109.47437 * 300.00255 * 1 2 3 30 30 H 1.09006 * 109.47188 * 60.00480 * 1 2 3 31 31 H 1.09003 * 109.47043 * 180.02562 * 1 2 3 32 32 H 1.08005 * 119.95449 * 359.97438 * 8 7 5 33 33 H 1.07992 * 119.66067 * 180.02562 * 9 8 7 34 34 H 1.07994 * 119.71164 * 179.97438 * 10 9 8 35 35 H 1.08000 * 120.05510 * 179.97438 * 11 10 9 36 36 H 0.96995 * 119.99961 * 179.97438 * 16 15 13 37 37 H 0.97002 * 119.99150 * 0.02562 * 23 21 2 38 38 H 1.08994 * 109.47130 * 299.99919 * 24 23 21 39 39 H 1.08998 * 109.46800 * 60.00212 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2180 0.0672 -2.2859 6 8 1.9977 1.2620 -2.2549 7 6 2.7025 -0.5604 -3.5271 8 6 3.0237 -1.9155 -3.5501 9 6 3.4775 -2.5003 -4.7172 10 6 3.6198 -1.7501 -5.8767 11 6 3.3117 -0.4090 -5.8851 12 6 2.8411 0.2095 -4.7121 13 6 2.5161 1.5802 -4.7119 14 1 1.6644 1.9331 -4.1494 15 6 3.2988 2.4868 -5.4426 16 7 2.9222 3.7325 -5.5543 17 14 4.8795 1.9123 -6.2556 18 1 4.5834 1.4323 -7.6293 19 1 5.8406 3.0424 -6.3225 20 1 5.4709 0.8059 -5.4612 21 6 2.0323 -0.7104 1.2304 22 8 2.7296 -1.6965 1.1191 23 7 1.7067 -0.2500 2.4546 24 6 2.1946 -0.9409 3.6507 25 6 1.6842 -0.2199 4.8999 26 9 0.2851 -0.2198 4.8994 27 9 2.1505 -0.8793 6.0422 28 9 2.1506 1.0990 4.9005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 2.9180 -2.5101 -2.6547 33 1 3.7242 -3.5516 -4.7273 34 1 3.9761 -2.2230 -6.7799 35 1 3.4259 0.1666 -6.7917 36 1 3.4635 4.3594 -6.0591 37 1 1.1487 0.5385 2.5435 38 1 1.8308 -1.9684 3.6505 39 1 3.2846 -0.9413 3.6508 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028719002.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:02 Heat of formation + Delta-G solvation = -272.406375 kcal Electronic energy + Delta-G solvation = -29767.791161 eV Core-core repulsion = 24838.627752 eV Total energy + Delta-G solvation = -4929.163409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -51.23855 -48.74872 -48.71644 -41.73896 -40.70531 -39.24942 -37.24057 -36.33051 -35.57018 -33.45468 -32.40640 -31.81534 -30.16060 -27.46322 -26.09231 -24.75220 -23.96894 -23.18054 -21.92216 -21.36144 -19.70879 -19.66885 -19.55173 -19.34146 -18.86223 -17.85003 -17.52915 -17.22252 -16.94743 -16.62612 -16.28034 -15.82486 -15.69239 -15.58915 -15.50119 -15.31483 -15.13711 -14.90899 -14.85951 -14.81640 -14.57429 -14.42980 -14.18782 -13.99025 -13.74701 -13.48149 -13.22210 -13.04719 -12.79745 -12.68678 -12.55206 -12.28795 -12.09429 -11.84085 -11.63700 -11.14561 -11.10483 -10.80388 -10.61581 -9.65265 -9.50338 -8.88608 -6.57007 0.14054 0.79748 1.05395 1.22227 1.25312 1.36913 1.47067 1.58809 1.90082 2.08646 2.13412 2.58138 2.63558 2.91114 3.07770 3.37111 3.41694 3.75534 3.86770 4.07725 4.09873 4.24136 4.26602 4.39208 4.56017 4.61981 4.71223 4.81181 4.82653 4.92952 5.04096 5.26074 5.30886 5.47939 5.64181 5.82121 5.88703 6.00340 6.19219 6.37383 6.63108 6.70895 6.78675 7.12681 8.15949 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.018102 B = 0.002529 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.448604 B =11069.547743 C =11798.449899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.060 3.940 3 H 0.107 0.893 4 O -0.344 6.344 5 C 0.503 3.497 6 O -0.530 6.530 7 C -0.258 4.258 8 C -0.025 4.025 9 C -0.232 4.232 10 C -0.050 4.050 11 C -0.244 4.244 12 C 0.107 3.893 13 C -0.440 4.440 14 H 0.071 0.929 15 C 0.041 3.959 16 N -0.839 5.839 17 Si 0.963 3.037 18 H -0.242 1.242 19 H -0.279 1.279 20 H -0.251 1.251 21 C 0.539 3.461 22 O -0.544 6.544 23 N -0.713 5.713 24 C 0.079 3.921 25 C 0.459 3.541 26 F -0.179 7.179 27 F -0.173 7.173 28 F -0.182 7.182 29 H 0.114 0.886 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.128 0.872 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.113 0.887 36 H 0.296 0.704 37 H 0.421 0.579 38 H 0.130 0.870 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.900 -8.679 16.286 18.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.002 3.998 3 H 0.125 0.875 4 O -0.261 6.261 5 C 0.354 3.646 6 O -0.421 6.421 7 C -0.260 4.260 8 C -0.043 4.043 9 C -0.251 4.251 10 C -0.068 4.068 11 C -0.262 4.262 12 C 0.103 3.897 13 C -0.468 4.468 14 H 0.089 0.911 15 C -0.175 4.175 16 N -0.465 5.465 17 Si 0.785 3.215 18 H -0.166 1.166 19 H -0.206 1.206 20 H -0.175 1.175 21 C 0.325 3.675 22 O -0.419 6.419 23 N -0.370 5.370 24 C -0.046 4.046 25 C 0.405 3.595 26 F -0.160 7.160 27 F -0.155 7.155 28 F -0.164 7.164 29 H 0.133 0.867 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.146 0.854 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.130 0.870 36 H 0.107 0.893 37 H 0.260 0.740 38 H 0.148 0.852 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.506 -8.726 16.218 18.478 hybrid contribution -0.073 1.197 0.100 1.204 sum -1.579 -7.528 16.319 18.041 Atomic orbital electron populations 1.22160 0.89784 1.04491 1.04994 1.22506 0.97669 0.97486 0.82158 0.87539 1.86666 1.78414 1.41424 1.19611 1.21449 0.74691 0.84931 0.83567 1.90810 1.50298 1.16912 1.84111 1.19037 1.20481 0.96296 0.90236 1.21299 0.92253 0.92242 0.98528 1.20977 1.10517 1.00811 0.92786 1.21338 0.93907 0.92851 0.98734 1.21302 1.11698 0.96348 0.96891 1.17750 0.88437 0.93094 0.90411 1.19800 1.11942 0.91606 1.23471 0.91064 1.27035 1.02495 0.94486 0.93471 1.69572 1.38887 1.05428 1.32588 0.85557 0.77008 0.78599 0.80315 1.16596 1.20562 1.17488 1.20031 0.79454 0.83930 0.84103 1.90748 1.37696 1.26750 1.86753 1.45341 1.54899 1.33159 1.03643 1.22600 1.03712 0.98401 0.79913 1.20360 0.75724 0.77563 0.85875 1.93239 1.29673 1.96348 1.96741 1.93234 1.88453 1.80677 1.53112 1.93242 1.88399 1.37976 1.96750 0.86740 0.92163 0.90317 0.85388 0.83843 0.83786 0.86968 0.89307 0.74047 0.85203 0.85874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 9.45 71.98 0.68 -2.97 16 2 C 0.06 1.82 2.99 29.85 0.09 1.91 16 3 H 0.11 3.33 7.16 -2.39 -0.02 3.32 16 4 O -0.34 -13.67 8.67 -50.80 -0.44 -14.11 16 5 C 0.50 23.90 7.83 70.20 0.55 24.45 16 6 O -0.53 -28.02 12.90 19.72 0.25 -27.77 16 7 C -0.26 -12.38 5.92 -19.72 -0.12 -12.50 16 8 C -0.02 -1.01 9.60 22.51 0.22 -0.79 16 9 C -0.23 -8.21 10.03 22.41 0.22 -7.98 16 10 C -0.05 -1.84 10.01 22.26 0.22 -1.61 16 11 C -0.24 -10.83 6.97 22.72 0.16 -10.67 16 12 C 0.11 5.48 5.04 -21.10 -0.11 5.37 16 13 C -0.44 -25.22 8.12 23.42 0.19 -25.03 16 14 H 0.07 4.59 6.30 -2.91 -0.02 4.57 16 15 C 0.04 2.19 5.50 85.38 0.47 2.66 16 16 N -0.84 -46.52 13.92 21.89 0.30 -46.21 16 17 Si 0.96 41.75 24.49 68.60 1.68 43.43 16 18 H -0.24 -9.41 6.69 99.48 0.67 -8.74 16 19 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.25 -11.13 6.73 99.48 0.67 -10.46 16 21 C 0.54 14.02 7.23 87.66 0.63 14.66 16 22 O -0.54 -18.16 16.50 15.75 0.26 -17.90 16 23 N -0.71 -11.73 5.31 -463.08 -2.46 -14.19 16 24 C 0.08 1.00 5.64 86.38 0.49 1.49 16 25 C 0.46 5.63 3.11 71.98 0.22 5.86 16 26 F -0.18 -2.35 17.18 44.97 0.77 -1.58 16 27 F -0.17 -2.31 17.32 44.97 0.78 -1.53 16 28 F -0.18 -2.66 17.18 44.97 0.77 -1.89 16 29 H 0.11 1.66 7.56 -2.39 -0.02 1.64 16 30 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.13 4.69 7.61 -2.91 -0.02 4.67 16 33 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 34 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 35 H 0.11 4.84 4.91 -2.91 -0.01 4.82 16 36 H 0.30 14.64 8.29 -92.71 -0.77 13.87 16 37 H 0.42 5.01 7.78 -92.71 -0.72 4.29 16 38 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -71.71 349.71 6.18 -65.52 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.34 Total: 21.39 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 3.92 Total: -5.17 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -2.15 Total: -60.40 kcal Atomic # 8 Polarization: -59.86 SS G_CDS: 0.07 Total: -59.78 kcal Atomic # 9 Polarization: -7.32 SS G_CDS: 2.32 Total: -5.00 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.68 Total: 43.43 kcal Total: -71.71 6.18 -65.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028719002.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.882 kcal (2) G-P(sol) polarization free energy of solvation -71.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -278.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -272.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds