Wall clock time and date at job start Wed Apr 1 2020 04:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00197 * 2 1 4 4 C 1.50694 * 109.47328 * 276.02977 * 3 2 1 5 5 H 1.08000 * 120.00208 * 4.93353 * 4 3 2 6 6 C 1.37880 * 120.00063 * 184.93027 * 4 3 2 7 7 N 1.31511 * 120.00178 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00067 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.46682 * 90.00309 * 8 6 4 10 10 H 1.48495 * 109.47107 * 210.00501 * 8 6 4 11 11 H 1.48507 * 109.47038 * 330.00475 * 8 6 4 12 12 S 1.65600 * 119.99922 * 179.97438 * 2 1 3 13 13 O 1.42101 * 106.40408 * 160.93356 * 12 2 1 14 14 O 1.42104 * 106.39726 * 28.01451 * 12 2 1 15 15 N 1.65598 * 107.21892 * 274.47688 * 12 2 1 16 16 C 1.46499 * 120.00133 * 63.84357 * 15 12 2 17 17 C 1.50694 * 109.47433 * 163.55881 * 16 15 12 18 18 O 1.21294 * 120.00239 * 359.97438 * 17 16 15 19 19 N 1.34776 * 120.00394 * 179.97438 * 17 16 15 20 20 C 1.40025 * 120.00430 * 184.48282 * 19 17 16 21 21 C 1.38853 * 120.04710 * 144.70045 * 20 19 17 22 22 C 1.38113 * 119.95491 * 180.21306 * 21 20 19 23 23 C 1.38475 * 120.04614 * 359.51493 * 22 21 20 24 24 F 1.35101 * 119.95736 * 180.25538 * 23 22 21 25 25 C 1.38476 * 120.08768 * 0.23330 * 23 22 21 26 26 C 1.38113 * 120.04745 * 0.02562 * 25 23 22 27 27 H 1.09003 * 109.47476 * 270.00317 * 1 2 3 28 28 H 1.09008 * 109.46758 * 30.00018 * 1 2 3 29 29 H 1.08992 * 109.47419 * 149.99695 * 1 2 3 30 30 H 1.09002 * 109.47396 * 36.03497 * 3 2 1 31 31 H 1.09009 * 109.47181 * 156.02908 * 3 2 1 32 32 H 0.96996 * 120.00170 * 180.02562 * 7 6 4 33 33 H 0.96999 * 119.99863 * 243.84033 * 15 12 2 34 34 H 1.09000 * 109.47738 * 43.55324 * 16 15 12 35 35 H 1.09003 * 109.47199 * 283.55676 * 16 15 12 36 36 H 0.97000 * 119.99925 * 4.48812 * 19 17 16 37 37 H 1.08000 * 120.02109 * 0.02562 * 21 20 19 38 38 H 1.08000 * 119.97892 * 179.79419 * 22 21 20 39 39 H 1.08005 * 119.97786 * 180.02562 * 25 23 22 40 40 H 1.07995 * 120.02291 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3194 1.7784 -1.4129 5 1 1.8263 1.2565 -2.2197 6 6 3.0605 2.9110 -1.6756 7 7 3.6614 3.5462 -0.6933 8 14 3.2123 3.5424 -3.4272 9 1 2.1114 4.4995 -3.7054 10 1 4.5187 4.2282 -3.5947 11 1 3.1273 2.4013 -4.3738 12 16 2.2929 -1.4342 0.0006 13 8 3.6094 -1.1377 -0.4448 14 8 1.4512 -2.3836 -0.6392 15 7 2.4311 -1.9197 1.5778 16 6 1.2307 -2.2459 2.3517 17 6 1.6216 -3.0268 3.5798 18 8 2.7881 -3.2858 3.7881 19 7 0.6750 -3.4374 4.4469 20 6 1.0449 -4.0805 5.6345 21 6 0.3131 -3.8707 6.7958 22 6 0.6823 -4.5026 7.9671 23 6 1.7753 -5.3526 7.9816 24 9 2.1317 -5.9738 9.1272 25 6 2.5033 -5.5672 6.8234 26 6 2.1407 -4.9332 5.6512 27 1 -0.3634 0.0001 1.0277 28 1 -0.3633 0.8901 -0.5139 29 1 -0.3634 -0.8899 -0.5138 30 1 1.6595 1.9989 0.6046 31 1 3.1925 1.1138 0.4175 32 1 4.1824 4.3432 -0.8781 33 1 3.3069 -1.9882 1.9892 34 1 0.5556 -2.8445 1.7401 35 1 0.7299 -1.3251 2.6507 36 1 -0.2625 -3.2875 4.2483 37 1 -0.5423 -3.2115 6.7838 38 1 0.1154 -4.3371 8.8714 39 1 3.3552 -6.2310 6.8366 40 1 2.7084 -5.1012 4.7480 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072074441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:42 Heat of formation + Delta-G solvation = -119.155763 kcal Electronic energy + Delta-G solvation = -27324.548032 eV Core-core repulsion = 22988.163206 eV Total energy + Delta-G solvation = -4336.384826 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.099 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.17986 -40.95274 -38.78910 -36.70137 -35.58507 -35.23747 -35.18655 -34.66588 -32.46949 -31.55142 -29.95739 -27.83449 -27.00244 -25.14096 -23.73428 -22.85682 -22.34124 -21.00001 -19.25318 -18.54869 -17.90709 -17.71938 -17.03559 -16.76912 -16.49786 -16.38068 -15.95912 -15.85610 -15.52381 -15.15508 -14.73055 -14.36246 -14.03996 -13.88092 -13.67402 -13.50682 -13.42462 -13.33834 -13.10682 -12.73347 -12.38304 -12.20127 -11.72764 -11.67083 -11.58763 -11.47232 -11.20514 -11.10594 -10.74322 -10.68773 -10.55847 -10.29882 -10.07683 -9.81163 -9.57293 -9.50201 -8.48991 -8.47181 -8.14740 -6.08937 -4.13534 0.65296 0.82936 1.08511 2.11367 2.51047 3.21453 3.29687 3.36842 3.40432 3.43536 3.92604 4.01372 4.18494 4.37585 4.42489 4.45437 4.80300 4.86772 4.89998 4.94078 5.01476 5.10638 5.26298 5.48215 5.50643 5.65139 5.70714 5.82178 5.85301 5.86168 5.97503 6.18449 6.48468 6.52433 6.82977 7.03099 7.22183 7.35528 7.56301 7.62848 7.88019 8.16830 8.89032 9.52124 10.99717 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.025792 B = 0.002130 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.348541 B =13145.392379 C =13297.160095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.995 5.995 3 C 0.255 3.745 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.784 3.216 13 O -0.955 6.955 14 O -0.996 6.996 15 N -1.124 6.124 16 C 0.106 3.894 17 C 0.515 3.485 18 O -0.507 6.507 19 N -0.673 5.673 20 C 0.137 3.863 21 C -0.115 4.115 22 C -0.135 4.135 23 C 0.081 3.919 24 F -0.141 7.141 25 C -0.134 4.134 26 C -0.092 4.092 27 H 0.038 0.962 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.264 0.736 33 H 0.423 0.577 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.416 0.584 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.875 -15.211 16.527 24.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.838 5.838 3 C 0.133 3.867 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 S 2.791 3.209 13 O -0.939 6.939 14 O -0.979 6.979 15 N -0.886 5.886 16 C -0.025 4.025 17 C 0.302 3.698 18 O -0.381 6.381 19 N -0.320 5.320 20 C 0.043 3.957 21 C -0.135 4.135 22 C -0.154 4.154 23 C 0.061 3.939 24 F -0.120 7.120 25 C -0.153 4.153 26 C -0.112 4.112 27 H 0.056 0.944 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.259 0.741 34 H 0.129 0.871 35 H 0.118 0.882 36 H 0.253 0.747 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.728 -15.655 15.844 24.305 hybrid contribution -0.086 0.702 -0.198 0.735 sum -9.814 -14.953 15.645 23.763 Atomic orbital electron populations 1.21408 0.80297 1.03796 1.00026 1.57641 1.14256 1.23368 1.88536 1.19114 0.91382 0.78472 0.97757 1.21478 1.31686 1.10528 0.93524 0.92093 1.24946 0.94949 0.96585 0.97529 1.69912 1.32752 1.19112 1.31463 0.86503 0.77472 0.78929 0.84576 1.20609 1.21028 1.19707 1.01964 0.73531 0.72918 0.72475 1.93662 1.37698 1.84358 1.78170 1.93526 1.69692 1.61641 1.73083 1.56213 1.13668 1.84925 1.33759 1.20962 0.89598 1.00209 0.91741 1.20897 0.85713 0.78940 0.84276 1.90717 1.18471 1.54658 1.74227 1.43459 1.10873 1.58560 1.19100 1.17773 0.97231 0.94718 0.86021 1.20778 1.01544 1.00890 0.90320 1.20931 0.97123 0.98061 0.99321 1.17727 0.96825 0.96870 0.82462 1.91501 1.91492 1.80953 1.48042 1.21104 1.00917 1.01876 0.91432 1.21214 0.96891 0.93947 0.99169 0.94387 0.90175 0.91518 0.94938 0.93717 0.92618 0.74078 0.87127 0.88203 0.74732 0.84415 0.84286 0.84308 0.83250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.36 10.69 59.84 0.64 2.00 16 2 N -0.99 -19.15 3.23 -123.06 -0.40 -19.55 16 3 C 0.25 6.16 5.11 -5.20 -0.03 6.14 16 4 C -0.53 -14.63 9.38 -34.44 -0.32 -14.95 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 8 Si 0.90 21.60 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 12 S 2.78 52.30 6.10 -107.50 -0.66 51.64 16 13 O -0.96 -22.52 16.94 -57.17 -0.97 -23.49 16 14 O -1.00 -19.30 16.32 -57.17 -0.93 -20.23 16 15 N -1.12 -16.06 5.97 -11.66 -0.07 -16.13 16 16 C 0.11 1.05 6.74 -5.20 -0.04 1.02 16 17 C 0.52 5.29 7.74 -10.99 -0.09 5.21 16 18 O -0.51 -6.97 13.21 5.55 0.07 -6.90 16 19 N -0.67 -4.77 5.34 -9.85 -0.05 -4.82 16 20 C 0.14 1.15 6.29 -83.66 -0.53 0.62 16 21 C -0.11 -0.75 9.96 -39.40 -0.39 -1.15 16 22 C -0.13 -0.96 10.02 -39.54 -0.40 -1.36 16 23 C 0.08 0.72 7.30 -39.41 -0.29 0.43 16 24 F -0.14 -1.36 17.27 2.25 0.04 -1.32 16 25 C -0.13 -1.19 10.02 -39.54 -0.40 -1.59 16 26 C -0.09 -0.89 8.69 -39.40 -0.34 -1.23 16 27 H 0.04 0.42 8.00 -51.93 -0.42 0.00 16 28 H 0.08 1.25 8.07 -51.92 -0.42 0.83 16 29 H 0.07 0.92 7.06 -51.93 -0.37 0.55 16 30 H 0.03 0.79 8.12 -51.93 -0.42 0.36 16 31 H 0.04 1.18 7.45 -51.92 -0.39 0.79 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.42 6.16 7.73 -34.47 -0.27 5.89 16 34 H 0.11 0.90 7.75 -51.93 -0.40 0.50 16 35 H 0.10 0.75 8.00 -51.93 -0.42 0.34 16 36 H 0.42 1.38 8.82 -40.82 -0.36 1.01 16 37 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 38 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 39 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 40 H 0.15 1.62 6.27 -52.49 -0.33 1.29 16 LS Contribution 363.50 15.07 5.48 5.48 Total: -1.00 -36.42 363.50 -8.64 -45.05 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -4.60 Total: 2.06 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -2.27 Total: -3.21 kcal Atomic # 7 Polarization: -65.87 SS G_CDS: 0.22 Total: -65.66 kcal Atomic # 8 Polarization: -48.79 SS G_CDS: -1.83 Total: -50.62 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 52.30 SS G_CDS: -0.66 Total: 51.64 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.42 -8.64 -45.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072074441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.102 kcal (2) G-P(sol) polarization free energy of solvation -36.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds