Wall clock time and date at job start Wed Apr 1 2020 04:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00197 * 2 1 4 4 C 1.50694 * 109.47328 * 276.02977 * 3 2 1 5 5 H 1.08000 * 120.00208 * 4.93353 * 4 3 2 6 6 C 1.37880 * 120.00063 * 184.93027 * 4 3 2 7 7 N 1.31511 * 120.00178 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00067 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.46682 * 90.00309 * 8 6 4 10 10 H 1.48495 * 109.47107 * 210.00501 * 8 6 4 11 11 H 1.48507 * 109.47038 * 330.00475 * 8 6 4 12 12 S 1.65600 * 119.99922 * 179.97438 * 2 1 3 13 13 O 1.42101 * 106.40408 * 160.93356 * 12 2 1 14 14 O 1.42104 * 106.39726 * 28.01451 * 12 2 1 15 15 N 1.65598 * 107.21892 * 274.47688 * 12 2 1 16 16 C 1.46499 * 120.00133 * 63.84357 * 15 12 2 17 17 C 1.50694 * 109.47433 * 163.55881 * 16 15 12 18 18 O 1.21294 * 120.00239 * 359.97438 * 17 16 15 19 19 N 1.34776 * 120.00394 * 179.97438 * 17 16 15 20 20 C 1.40025 * 120.00430 * 184.48282 * 19 17 16 21 21 C 1.38853 * 120.04710 * 144.70045 * 20 19 17 22 22 C 1.38113 * 119.95491 * 180.21306 * 21 20 19 23 23 C 1.38475 * 120.04614 * 359.51493 * 22 21 20 24 24 F 1.35101 * 119.95736 * 180.25538 * 23 22 21 25 25 C 1.38476 * 120.08768 * 0.23330 * 23 22 21 26 26 C 1.38113 * 120.04745 * 0.02562 * 25 23 22 27 27 H 1.09003 * 109.47476 * 270.00317 * 1 2 3 28 28 H 1.09008 * 109.46758 * 30.00018 * 1 2 3 29 29 H 1.08992 * 109.47419 * 149.99695 * 1 2 3 30 30 H 1.09002 * 109.47396 * 36.03497 * 3 2 1 31 31 H 1.09009 * 109.47181 * 156.02908 * 3 2 1 32 32 H 0.96996 * 120.00170 * 180.02562 * 7 6 4 33 33 H 0.96999 * 119.99863 * 243.84033 * 15 12 2 34 34 H 1.09000 * 109.47738 * 43.55324 * 16 15 12 35 35 H 1.09003 * 109.47199 * 283.55676 * 16 15 12 36 36 H 0.97000 * 119.99925 * 4.48812 * 19 17 16 37 37 H 1.08000 * 120.02109 * 0.02562 * 21 20 19 38 38 H 1.08000 * 119.97892 * 179.79419 * 22 21 20 39 39 H 1.08005 * 119.97786 * 180.02562 * 25 23 22 40 40 H 1.07995 * 120.02291 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3194 1.7784 -1.4129 5 1 1.8263 1.2565 -2.2197 6 6 3.0605 2.9110 -1.6756 7 7 3.6614 3.5462 -0.6933 8 14 3.2123 3.5424 -3.4272 9 1 2.1114 4.4995 -3.7054 10 1 4.5187 4.2282 -3.5947 11 1 3.1273 2.4013 -4.3738 12 16 2.2929 -1.4342 0.0006 13 8 3.6094 -1.1377 -0.4448 14 8 1.4512 -2.3836 -0.6392 15 7 2.4311 -1.9197 1.5778 16 6 1.2307 -2.2459 2.3517 17 6 1.6216 -3.0268 3.5798 18 8 2.7881 -3.2858 3.7881 19 7 0.6750 -3.4374 4.4469 20 6 1.0449 -4.0805 5.6345 21 6 0.3131 -3.8707 6.7958 22 6 0.6823 -4.5026 7.9671 23 6 1.7753 -5.3526 7.9816 24 9 2.1317 -5.9738 9.1272 25 6 2.5033 -5.5672 6.8234 26 6 2.1407 -4.9332 5.6512 27 1 -0.3634 0.0001 1.0277 28 1 -0.3633 0.8901 -0.5139 29 1 -0.3634 -0.8899 -0.5138 30 1 1.6595 1.9989 0.6046 31 1 3.1925 1.1138 0.4175 32 1 4.1824 4.3432 -0.8781 33 1 3.3069 -1.9882 1.9892 34 1 0.5556 -2.8445 1.7401 35 1 0.7299 -1.3251 2.6507 36 1 -0.2625 -3.2875 4.2483 37 1 -0.5423 -3.2115 6.7838 38 1 0.1154 -4.3371 8.8714 39 1 3.3552 -6.2310 6.8366 40 1 2.7084 -5.1012 4.7480 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072074441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:41 Heat of formation + Delta-G solvation = -147.877857 kcal Electronic energy + Delta-G solvation = -27325.793515 eV Core-core repulsion = 22988.163206 eV Total energy + Delta-G solvation = -4337.630309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.099 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.87453 -41.67879 -39.49152 -38.29856 -37.19756 -36.85682 -35.96118 -35.67014 -34.48093 -32.15106 -30.67789 -29.62641 -27.86513 -26.72323 -24.36739 -24.18824 -23.52224 -21.74094 -20.51941 -19.38137 -19.00143 -18.60005 -18.48557 -18.31139 -17.66193 -17.38997 -17.12885 -16.72916 -16.55730 -16.33528 -16.06810 -15.38781 -15.10903 -14.90922 -14.69968 -14.54235 -14.42204 -14.13888 -14.03586 -13.88112 -13.77156 -13.45533 -13.32373 -13.14914 -13.11591 -13.00489 -12.90952 -12.44678 -12.34876 -12.20315 -11.95755 -11.73067 -11.41037 -11.10049 -10.66921 -10.55867 -10.11470 -9.75985 -9.13728 -8.19184 -6.30913 -0.38338 0.00568 0.22869 1.36323 1.39707 1.42811 1.52592 1.76123 2.13613 2.41155 2.59619 2.63217 3.12478 3.30437 3.42304 3.48752 3.78345 3.89390 4.12401 4.16477 4.23791 4.28057 4.33865 4.50936 4.59715 4.81852 4.89981 4.93731 5.12949 5.16935 5.18613 5.21328 5.24473 5.32561 5.46476 5.73166 5.83102 5.89769 6.03684 6.12736 6.30892 6.78606 6.96821 7.38271 8.88343 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.025792 B = 0.002130 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.348541 B =13145.392379 C =13297.160095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.999 5.999 3 C 0.269 3.731 4 C -0.550 4.550 5 H 0.056 0.944 6 C 0.010 3.990 7 N -0.925 5.925 8 Si 0.956 3.044 9 H -0.264 1.264 10 H -0.282 1.282 11 H -0.274 1.274 12 S 2.805 3.195 13 O -1.011 7.011 14 O -1.002 7.002 15 N -1.119 6.119 16 C 0.094 3.906 17 C 0.516 3.484 18 O -0.550 6.550 19 N -0.652 5.652 20 C 0.125 3.875 21 C -0.102 4.102 22 C -0.131 4.131 23 C 0.064 3.936 24 F -0.149 7.149 25 C -0.144 4.144 26 C -0.112 4.112 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.033 0.967 31 H 0.017 0.983 32 H 0.267 0.733 33 H 0.422 0.578 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.437 0.563 37 H 0.174 0.826 38 H 0.164 0.836 39 H 0.142 0.858 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.675 -15.067 17.247 26.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.842 5.842 3 C 0.145 3.855 4 C -0.589 4.589 5 H 0.074 0.926 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.781 3.219 9 H -0.189 1.189 10 H -0.208 1.208 11 H -0.199 1.199 12 S 2.813 3.187 13 O -0.995 6.995 14 O -0.985 6.985 15 N -0.883 5.883 16 C -0.035 4.035 17 C 0.303 3.697 18 O -0.426 6.426 19 N -0.300 5.300 20 C 0.031 3.969 21 C -0.121 4.121 22 C -0.150 4.150 23 C 0.045 3.955 24 F -0.128 7.128 25 C -0.163 4.163 26 C -0.132 4.132 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.051 0.949 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.259 0.741 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.277 0.723 37 H 0.192 0.808 38 H 0.182 0.818 39 H 0.160 0.840 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.617 -15.527 16.568 25.976 hybrid contribution 0.704 0.559 -0.322 0.955 sum -11.913 -14.968 16.245 25.097 Atomic orbital electron populations 1.21750 0.77494 1.03963 1.03274 1.57456 1.16082 1.21517 1.89144 1.18649 0.90672 0.80313 0.95878 1.21874 1.31430 1.10610 0.94997 0.92620 1.25769 0.94825 0.97035 1.01350 1.70007 1.33523 1.19631 1.33281 0.85590 0.77917 0.78474 0.79933 1.18865 1.20769 1.19859 1.01043 0.72057 0.72594 0.73033 1.93583 1.40739 1.85133 1.80086 1.93510 1.69517 1.61527 1.73989 1.55759 1.15257 1.84495 1.32740 1.21408 0.88110 1.02307 0.91635 1.20937 0.85491 0.78685 0.84567 1.90720 1.20333 1.56383 1.75182 1.43226 1.11471 1.57249 1.18086 1.17947 0.97239 0.94686 0.87043 1.21114 1.01733 1.00320 0.88981 1.21272 0.96315 0.96864 1.00567 1.17961 0.97754 0.97718 0.82094 1.91478 1.91705 1.81265 1.48365 1.21171 1.01376 1.02212 0.91584 1.21164 0.97897 0.95389 0.98760 0.89585 0.91227 0.90179 0.94944 0.96522 0.92452 0.74122 0.84702 0.84839 0.72270 0.80819 0.81839 0.84026 0.85095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.16 10.69 127.77 1.37 3.52 16 2 N -1.00 -37.42 3.23 -543.23 -1.75 -39.17 16 3 C 0.27 13.09 5.11 85.63 0.44 13.53 16 4 C -0.55 -30.40 9.38 25.60 0.24 -30.16 16 5 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.54 5.46 84.66 0.46 1.01 16 7 N -0.92 -54.12 13.29 21.45 0.28 -53.84 16 8 Si 0.96 44.24 29.54 68.60 2.03 46.26 16 9 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 12 S 2.81 104.07 6.10 -56.49 -0.34 103.73 16 13 O -1.01 -49.03 16.94 -128.00 -2.17 -51.20 16 14 O -1.00 -37.39 16.32 -128.00 -2.09 -39.48 16 15 N -1.12 -30.86 5.97 -190.80 -1.14 -32.00 16 16 C 0.09 1.61 6.74 85.63 0.58 2.19 16 17 C 0.52 9.67 7.74 87.66 0.68 10.35 16 18 O -0.55 -15.07 13.21 -3.07 -0.04 -15.11 16 19 N -0.65 -7.45 5.34 -303.45 -1.62 -9.07 16 20 C 0.13 1.86 6.29 38.13 0.24 2.10 16 21 C -0.10 -1.00 9.96 22.39 0.22 -0.77 16 22 C -0.13 -1.53 10.02 22.30 0.22 -1.31 16 23 C 0.06 1.08 7.30 22.38 0.16 1.25 16 24 F -0.15 -2.81 17.27 44.97 0.78 -2.03 16 25 C -0.14 -2.60 10.02 22.30 0.22 -2.38 16 26 C -0.11 -2.17 8.69 22.39 0.19 -1.98 16 27 H 0.09 1.49 8.00 -2.39 -0.02 1.47 16 28 H 0.07 2.04 8.07 -2.38 -0.02 2.02 16 29 H 0.08 1.95 7.06 -2.39 -0.02 1.93 16 30 H 0.03 1.57 8.12 -2.39 -0.02 1.55 16 31 H 0.02 0.91 7.45 -2.38 -0.02 0.89 16 32 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 33 H 0.42 12.37 7.73 -96.75 -0.75 11.62 16 34 H 0.14 1.69 7.75 -2.39 -0.02 1.67 16 35 H 0.13 1.42 8.00 -2.39 -0.02 1.40 16 36 H 0.44 1.11 8.82 -92.71 -0.82 0.29 16 37 H 0.17 0.43 8.06 -2.91 -0.02 0.40 16 38 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 39 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 40 H 0.13 3.01 6.27 -2.91 -0.02 2.99 16 Total: -1.00 -81.33 363.50 -1.49 -82.83 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -0.46 Total: 11.74 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 5.03 Total: -2.65 kcal Atomic # 7 Polarization: -129.84 SS G_CDS: -4.23 Total: -134.07 kcal Atomic # 8 Polarization: -101.50 SS G_CDS: -4.30 Total: -105.80 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 104.07 SS G_CDS: -0.34 Total: 103.73 kcal Total: -81.33 -1.49 -82.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072074441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.050 kcal (2) G-P(sol) polarization free energy of solvation -81.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds