Wall clock time and date at job start Wed Apr 1 2020 03:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46506 * 2 1 4 4 C 1.50697 * 109.47012 * 120.00041 * 2 1 3 5 5 H 1.07998 * 119.99866 * 120.00645 * 4 2 1 6 6 C 1.37879 * 120.00398 * 300.00157 * 4 2 1 7 7 N 1.31512 * 120.00401 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 119.99757 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.47252 * 89.99667 * 8 6 4 10 10 H 1.48497 * 109.47081 * 210.00191 * 8 6 4 11 11 H 1.48505 * 109.47013 * 329.99751 * 8 6 4 12 12 O 1.45197 * 109.47155 * 240.00379 * 2 1 3 13 13 C 1.34899 * 116.99878 * 89.99978 * 12 2 1 14 14 O 1.21618 * 120.00221 * 359.97438 * 13 12 2 15 15 C 1.46473 * 119.99667 * 179.97438 * 13 12 2 16 16 C 1.36637 * 125.99431 * 179.97438 * 15 13 12 17 17 C 1.40312 * 106.70286 * 179.97438 * 16 15 13 18 18 C 1.35165 * 107.12775 * 0.02562 * 17 16 15 19 19 S 1.76202 * 125.61350 * 179.97438 * 18 17 16 20 20 O 1.42098 * 106.40246 * 196.15855 * 19 18 17 21 21 O 1.42101 * 106.39705 * 329.08175 * 19 18 17 22 22 N 1.65602 * 107.21398 * 82.61727 * 19 18 17 23 23 C 1.46498 * 119.99935 * 66.49712 * 22 19 18 24 24 C 1.52999 * 109.47469 * 68.20575 * 23 22 19 25 25 C 1.52999 * 109.47048 * 188.21085 * 23 22 19 26 26 C 1.53001 * 109.46641 * 308.20217 * 23 22 19 27 27 O 1.33920 * 108.77919 * 359.77353 * 18 17 16 28 28 H 1.08994 * 109.47334 * 299.99824 * 1 2 3 29 29 H 1.08998 * 109.47349 * 60.00234 * 1 2 3 30 30 H 1.09008 * 109.46892 * 179.97438 * 1 2 3 31 31 H 0.96997 * 120.00192 * 180.02562 * 7 6 4 32 32 H 1.08001 * 126.64938 * 359.96914 * 16 15 13 33 33 H 1.07999 * 126.43422 * 180.02562 * 17 16 15 34 34 H 0.97000 * 119.99865 * 246.48977 * 22 19 18 35 35 H 1.09000 * 109.47029 * 60.00051 * 24 23 22 36 36 H 1.09003 * 109.46667 * 180.02562 * 24 23 22 37 37 H 1.09000 * 109.47023 * 299.99992 * 24 23 22 38 38 H 1.09003 * 109.47536 * 59.99150 * 25 23 22 39 39 H 1.08997 * 109.47590 * 179.97438 * 25 23 22 40 40 H 1.09000 * 109.46831 * 299.99570 * 25 23 22 41 41 H 1.09000 * 109.47275 * 69.35572 * 26 23 22 42 42 H 1.09007 * 109.47110 * 189.34987 * 26 23 22 43 43 H 1.08991 * 109.47810 * 309.35238 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6992 -0.2394 2.4828 7 7 2.1380 -0.8591 3.5566 8 14 0.6247 1.2789 2.6542 9 1 -0.8029 0.8725 2.6998 10 1 0.9758 1.9950 3.9069 11 1 0.8470 2.1764 1.4921 12 8 2.0140 -0.6844 -1.1856 13 6 2.2182 0.0679 -2.2865 14 8 1.9969 1.2634 -2.2558 15 6 2.7063 -0.5551 -3.5190 16 6 2.9539 0.0866 -4.6997 17 6 3.4042 -0.8889 -5.6021 18 6 3.4114 -2.0685 -4.9423 19 16 3.8949 -3.6210 -5.6212 20 8 3.3986 -4.6173 -4.7379 21 8 3.5669 -3.5741 -7.0031 22 7 5.5467 -3.7004 -5.5351 23 6 6.2101 -3.7619 -4.2303 24 6 5.9015 -5.1041 -3.5639 25 6 7.7218 -3.6220 -4.4197 26 6 5.6996 -2.6234 -3.3447 27 8 2.9947 -1.8626 -3.6864 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9034 -0.5280 4.4375 32 1 2.8275 1.1404 -4.8995 33 1 3.6911 -0.7275 -6.6307 34 1 6.0751 -3.7063 -6.3485 35 1 6.2651 -5.9151 -4.1949 36 1 6.3947 -5.1495 -2.5930 37 1 4.8245 -5.2037 -3.4290 38 1 7.9417 -2.6658 -4.8944 39 1 8.2154 -3.6673 -3.4489 40 1 8.0855 -4.4330 -5.0507 41 1 4.6610 -2.8120 -3.0731 42 1 6.3066 -2.5659 -2.4411 43 1 5.7676 -1.6814 -3.8886 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113687174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:27 Heat of formation + Delta-G solvation = -130.712975 kcal Electronic energy + Delta-G solvation = -29330.259504 eV Core-core repulsion = 25084.541074 eV Total energy + Delta-G solvation = -4245.718430 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.117 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.02308 -39.78907 -38.41105 -37.40137 -36.30148 -36.22652 -33.55721 -33.28976 -31.38237 -31.11547 -30.31668 -27.72995 -27.43655 -25.44409 -24.77565 -22.53479 -21.56983 -21.00203 -20.23267 -19.74997 -18.78272 -18.08790 -17.69311 -16.83520 -16.64756 -16.31704 -16.31240 -15.29951 -15.25473 -14.74528 -14.56065 -14.16944 -14.01127 -13.80493 -13.47310 -13.33501 -13.16873 -12.92973 -12.81197 -12.49348 -12.43579 -12.41379 -12.31271 -12.09409 -11.96785 -11.84404 -11.72764 -11.70117 -11.55688 -10.99513 -10.84639 -10.61516 -10.44352 -10.31901 -10.03423 -9.99933 -9.75756 -9.38392 -9.25202 -8.76658 -6.29520 -4.33224 -0.15286 0.40576 1.67297 2.28151 2.60912 2.95474 3.13323 3.16809 3.25557 3.26144 3.35307 4.19356 4.19798 4.36006 4.41855 4.58298 4.69106 4.83867 4.93088 5.00673 5.02050 5.21521 5.29356 5.36563 5.40670 5.51547 5.63733 5.75179 5.79211 5.82807 5.85615 5.98923 6.11748 6.14761 6.23948 6.31114 6.38513 6.42029 6.59647 6.81095 7.10195 7.34635 7.92464 8.35744 8.76989 9.25823 10.82311 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.015556 B = 0.003261 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.469763 B = 8583.331275 C = 9483.928513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.191 3.809 3 H 0.050 0.950 4 C -0.529 4.529 5 H 0.090 0.910 6 C 0.082 3.918 7 N -0.884 5.884 8 Si 0.878 3.122 9 H -0.272 1.272 10 H -0.288 1.288 11 H -0.262 1.262 12 O -0.322 6.322 13 C 0.534 3.466 14 O -0.486 6.486 15 C 0.015 3.985 16 C -0.147 4.147 17 C -0.097 4.097 18 C -0.558 4.558 19 S 2.723 3.277 20 O -0.926 6.926 21 O -0.941 6.941 22 N -1.099 6.099 23 C 0.173 3.827 24 C -0.186 4.186 25 C -0.149 4.149 26 C -0.195 4.195 27 O -0.085 6.085 28 H 0.060 0.940 29 H 0.038 0.962 30 H 0.067 0.933 31 H 0.271 0.729 32 H 0.174 0.826 33 H 0.174 0.826 34 H 0.420 0.580 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.623 -3.827 -20.315 22.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.138 3.862 3 H 0.068 0.932 4 C -0.566 4.566 5 H 0.108 0.892 6 C -0.121 4.121 7 N -0.521 5.521 8 Si 0.707 3.293 9 H -0.198 1.198 10 H -0.215 1.215 11 H -0.187 1.187 12 O -0.237 6.237 13 C 0.377 3.623 14 O -0.376 6.376 15 C -0.041 4.041 16 C -0.167 4.167 17 C -0.118 4.118 18 C -0.689 4.689 19 S 2.804 3.196 20 O -0.916 6.916 21 O -0.931 6.931 22 N -0.862 5.862 23 C 0.086 3.914 24 C -0.244 4.244 25 C -0.207 4.207 26 C -0.253 4.253 27 O 0.023 5.977 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.192 0.808 33 H 0.191 0.809 34 H 0.255 0.745 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.828 -4.302 -19.906 22.197 hybrid contribution -0.307 1.891 0.063 1.917 sum 8.521 -2.411 -19.843 21.730 Atomic orbital electron populations 1.22565 0.98034 1.02313 1.00097 1.21131 0.90822 0.94498 0.79780 0.93216 1.20734 1.33808 1.15097 0.86966 0.89206 1.24706 0.95564 0.96718 0.95148 1.69823 1.44378 1.39814 0.98042 0.86990 0.80883 0.83539 0.77900 1.19843 1.21515 1.18722 1.86730 1.74920 1.41836 1.20187 1.19237 0.75384 0.84740 0.82987 1.90912 1.48427 1.14615 1.83691 1.21941 1.04132 0.82508 0.95485 1.22125 1.01953 1.01892 0.90725 1.21833 0.98354 0.90362 1.01223 1.36178 1.18734 1.23138 0.90806 1.01651 0.72571 0.72203 0.73126 1.93611 1.78367 1.53238 1.66367 1.93654 1.82792 1.86112 1.30514 1.55706 1.25724 1.90239 1.14494 1.20295 0.93884 0.96342 0.80871 1.22670 1.05738 0.95106 1.00897 1.22062 0.92953 1.02439 1.03271 1.22749 1.03860 0.97674 1.01032 1.84397 1.61583 1.25577 1.26153 0.92149 0.94272 0.91406 0.91915 0.80848 0.80874 0.74460 0.91946 0.90955 0.88654 0.91820 0.90597 0.91747 0.90515 0.89408 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.87 9.03 37.16 0.34 -3.53 16 2 C 0.19 4.72 2.16 -27.88 -0.06 4.66 16 3 H 0.05 1.26 6.22 -51.93 -0.32 0.94 16 4 C -0.53 -14.87 9.48 -34.44 -0.33 -15.19 16 5 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 6 C 0.08 2.32 5.45 -17.82 -0.10 2.22 16 7 N -0.88 -26.09 13.96 55.43 0.77 -25.31 16 8 Si 0.88 21.06 24.37 -169.99 -4.14 16.92 16 9 H -0.27 -6.27 6.87 56.52 0.39 -5.88 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.26 -6.14 6.53 56.52 0.37 -5.77 16 12 O -0.32 -7.38 9.88 -42.48 -0.42 -7.80 16 13 C 0.53 10.65 7.90 34.05 0.27 10.92 16 14 O -0.49 -10.23 16.13 -19.35 -0.31 -10.55 16 15 C 0.01 0.24 7.18 -36.85 -0.26 -0.02 16 16 C -0.15 -1.86 10.62 -39.38 -0.42 -2.28 16 17 C -0.10 -1.03 10.65 -39.90 -0.43 -1.46 16 18 C -0.56 -6.94 4.98 29.64 0.15 -6.80 16 19 S 2.72 29.84 5.54 -107.50 -0.60 29.24 16 20 O -0.93 -13.04 15.03 -57.62 -0.87 -13.91 16 21 O -0.94 -11.40 17.89 -57.17 -1.02 -12.42 16 22 N -1.10 -8.36 5.53 0.54 0.00 -8.36 16 23 C 0.17 1.46 1.14 -131.82 -0.15 1.31 16 24 C -0.19 -1.77 8.39 37.16 0.31 -1.45 16 25 C -0.15 -0.88 8.58 37.16 0.32 -0.56 16 26 C -0.20 -2.05 6.95 37.16 0.26 -1.79 16 27 O -0.08 -1.33 8.39 4.35 0.04 -1.30 16 28 H 0.06 1.36 3.27 -51.93 -0.17 1.19 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.46 8.14 -51.92 -0.42 1.04 16 31 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.17 1.84 8.06 -52.49 -0.42 1.41 16 33 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.42 1.94 8.62 -34.47 -0.30 1.65 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.15 5.54 -51.93 -0.29 0.86 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 0.99 4.98 -51.93 -0.26 0.73 16 42 H 0.09 0.87 8.12 -51.93 -0.42 0.45 16 43 H 0.06 0.64 7.62 -51.93 -0.40 0.24 16 LS Contribution 363.59 15.07 5.48 5.48 Total: -1.00 -34.19 363.59 -6.73 -40.92 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -5.56 Total: 1.06 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -0.10 Total: -13.98 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.78 Total: -33.67 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -2.58 Total: -45.97 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.14 Total: 16.92 kcal Atomic # 16 Polarization: 29.84 SS G_CDS: -0.60 Total: 29.24 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.19 -6.73 -40.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113687174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.794 kcal (2) G-P(sol) polarization free energy of solvation -34.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds