Wall clock time and date at job start Wed Apr 1 2020 03:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46506 * 2 1 4 4 C 1.50697 * 109.47012 * 120.00041 * 2 1 3 5 5 H 1.07998 * 119.99866 * 120.00645 * 4 2 1 6 6 C 1.37879 * 120.00398 * 300.00157 * 4 2 1 7 7 N 1.31512 * 120.00401 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 119.99757 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.47252 * 89.99667 * 8 6 4 10 10 H 1.48497 * 109.47081 * 210.00191 * 8 6 4 11 11 H 1.48505 * 109.47013 * 329.99751 * 8 6 4 12 12 O 1.45197 * 109.47155 * 240.00379 * 2 1 3 13 13 C 1.34899 * 116.99878 * 89.99978 * 12 2 1 14 14 O 1.21618 * 120.00221 * 359.97438 * 13 12 2 15 15 C 1.46473 * 119.99667 * 179.97438 * 13 12 2 16 16 C 1.36637 * 125.99431 * 179.97438 * 15 13 12 17 17 C 1.40312 * 106.70286 * 179.97438 * 16 15 13 18 18 C 1.35165 * 107.12775 * 0.02562 * 17 16 15 19 19 S 1.76202 * 125.61350 * 179.97438 * 18 17 16 20 20 O 1.42098 * 106.40246 * 196.15855 * 19 18 17 21 21 O 1.42101 * 106.39705 * 329.08175 * 19 18 17 22 22 N 1.65602 * 107.21398 * 82.61727 * 19 18 17 23 23 C 1.46498 * 119.99935 * 66.49712 * 22 19 18 24 24 C 1.52999 * 109.47469 * 68.20575 * 23 22 19 25 25 C 1.52999 * 109.47048 * 188.21085 * 23 22 19 26 26 C 1.53001 * 109.46641 * 308.20217 * 23 22 19 27 27 O 1.33920 * 108.77919 * 359.77353 * 18 17 16 28 28 H 1.08994 * 109.47334 * 299.99824 * 1 2 3 29 29 H 1.08998 * 109.47349 * 60.00234 * 1 2 3 30 30 H 1.09008 * 109.46892 * 179.97438 * 1 2 3 31 31 H 0.96997 * 120.00192 * 180.02562 * 7 6 4 32 32 H 1.08001 * 126.64938 * 359.96914 * 16 15 13 33 33 H 1.07999 * 126.43422 * 180.02562 * 17 16 15 34 34 H 0.97000 * 119.99865 * 246.48977 * 22 19 18 35 35 H 1.09000 * 109.47029 * 60.00051 * 24 23 22 36 36 H 1.09003 * 109.46667 * 180.02562 * 24 23 22 37 37 H 1.09000 * 109.47023 * 299.99992 * 24 23 22 38 38 H 1.09003 * 109.47536 * 59.99150 * 25 23 22 39 39 H 1.08997 * 109.47590 * 179.97438 * 25 23 22 40 40 H 1.09000 * 109.46831 * 299.99570 * 25 23 22 41 41 H 1.09000 * 109.47275 * 69.35572 * 26 23 22 42 42 H 1.09007 * 109.47110 * 189.34987 * 26 23 22 43 43 H 1.08991 * 109.47810 * 309.35238 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6992 -0.2394 2.4828 7 7 2.1380 -0.8591 3.5566 8 14 0.6247 1.2789 2.6542 9 1 -0.8029 0.8725 2.6998 10 1 0.9758 1.9950 3.9069 11 1 0.8470 2.1764 1.4921 12 8 2.0140 -0.6844 -1.1856 13 6 2.2182 0.0679 -2.2865 14 8 1.9969 1.2634 -2.2558 15 6 2.7063 -0.5551 -3.5190 16 6 2.9539 0.0866 -4.6997 17 6 3.4042 -0.8889 -5.6021 18 6 3.4114 -2.0685 -4.9423 19 16 3.8949 -3.6210 -5.6212 20 8 3.3986 -4.6173 -4.7379 21 8 3.5669 -3.5741 -7.0031 22 7 5.5467 -3.7004 -5.5351 23 6 6.2101 -3.7619 -4.2303 24 6 5.9015 -5.1041 -3.5639 25 6 7.7218 -3.6220 -4.4197 26 6 5.6996 -2.6234 -3.3447 27 8 2.9947 -1.8626 -3.6864 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9034 -0.5280 4.4375 32 1 2.8275 1.1404 -4.8995 33 1 3.6911 -0.7275 -6.6307 34 1 6.0751 -3.7063 -6.3485 35 1 6.2651 -5.9151 -4.1949 36 1 6.3947 -5.1495 -2.5930 37 1 4.8245 -5.2037 -3.4290 38 1 7.9417 -2.6658 -4.8944 39 1 8.2154 -3.6673 -3.4489 40 1 8.0855 -4.4330 -5.0507 41 1 4.6610 -2.8120 -3.0731 42 1 6.3066 -2.5659 -2.4411 43 1 5.7676 -1.6814 -3.8886 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113687174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:26 Heat of formation + Delta-G solvation = -156.785471 kcal Electronic energy + Delta-G solvation = -29331.390092 eV Core-core repulsion = 25084.541074 eV Total energy + Delta-G solvation = -4246.849019 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.117 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.10981 -41.43040 -39.19305 -38.29814 -38.00933 -37.21162 -35.39379 -34.54855 -32.91852 -32.10123 -31.64092 -28.41788 -28.16083 -27.43152 -26.18516 -23.67247 -23.07384 -21.83241 -21.69528 -20.66555 -20.00825 -19.18938 -18.86685 -18.67492 -18.03964 -17.89822 -17.17555 -16.87338 -16.55173 -16.08326 -15.42088 -15.16876 -15.06635 -14.79548 -14.76610 -14.71368 -14.34998 -14.31599 -14.22570 -13.89862 -13.67620 -13.59798 -13.41756 -13.23157 -12.99136 -12.91428 -12.85138 -12.62527 -12.50259 -12.31892 -12.25520 -12.17349 -11.84532 -11.62328 -11.60981 -11.39900 -11.33725 -10.88241 -10.77544 -10.46605 -8.47148 -6.57937 -1.06921 -0.74942 0.63192 1.07407 1.23670 1.30413 1.40122 1.55669 1.69663 1.91820 2.17642 2.42553 2.84915 3.23496 3.47319 3.55207 3.67539 3.87384 3.95227 4.01664 4.05898 4.15751 4.27099 4.32210 4.40194 4.48914 4.62792 4.64377 4.68976 4.87018 4.89368 4.98243 5.02543 5.05629 5.12567 5.22780 5.29414 5.32020 5.36029 5.36745 5.53981 5.99900 6.08367 6.44157 6.52961 7.05847 8.68836 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.015556 B = 0.003261 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.469763 B = 8583.331275 C = 9483.928513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.193 3.807 3 H 0.044 0.956 4 C -0.545 4.545 5 H 0.045 0.955 6 C 0.033 3.967 7 N -0.928 5.928 8 Si 0.941 3.059 9 H -0.251 1.251 10 H -0.281 1.281 11 H -0.252 1.252 12 O -0.344 6.344 13 C 0.535 3.465 14 O -0.503 6.503 15 C -0.031 4.031 16 C -0.116 4.116 17 C -0.083 4.083 18 C -0.558 4.558 19 S 2.739 3.261 20 O -0.961 6.961 21 O -0.948 6.948 22 N -1.078 6.078 23 C 0.177 3.823 24 C -0.192 4.192 25 C -0.145 4.145 26 C -0.201 4.201 27 O -0.110 6.110 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.277 0.723 32 H 0.198 0.802 33 H 0.219 0.781 34 H 0.438 0.562 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.048 0.952 42 H 0.087 0.913 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.125 -2.383 -23.129 25.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.139 3.861 3 H 0.061 0.939 4 C -0.583 4.583 5 H 0.063 0.937 6 C -0.167 4.167 7 N -0.565 5.565 8 Si 0.765 3.235 9 H -0.176 1.176 10 H -0.207 1.207 11 H -0.176 1.176 12 O -0.259 6.259 13 C 0.379 3.621 14 O -0.394 6.394 15 C -0.085 4.085 16 C -0.136 4.136 17 C -0.103 4.103 18 C -0.687 4.687 19 S 2.819 3.181 20 O -0.951 6.951 21 O -0.937 6.937 22 N -0.845 5.845 23 C 0.089 3.911 24 C -0.250 4.250 25 C -0.203 4.203 26 C -0.259 4.259 27 O -0.003 6.003 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.216 0.784 33 H 0.236 0.764 34 H 0.277 0.723 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.106 0.894 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.330 -2.855 -22.761 24.764 hybrid contribution -0.312 1.308 0.829 1.580 sum 9.019 -1.546 -21.932 23.764 Atomic orbital electron populations 1.22468 0.95904 1.02839 1.01291 1.20858 0.92368 0.93418 0.79451 0.93859 1.20884 1.33831 1.14222 0.89344 0.93689 1.25570 0.96770 0.99981 0.94388 1.69951 1.45868 1.41850 0.98847 0.85976 0.79778 0.79371 0.78364 1.17599 1.20733 1.17592 1.86707 1.75760 1.42615 1.20847 1.19654 0.74698 0.84682 0.83056 1.90873 1.49405 1.15024 1.84098 1.21587 1.08247 0.83528 0.95154 1.22539 0.98744 1.03144 0.89149 1.22360 0.96686 0.88593 1.02636 1.36634 1.17725 1.24460 0.89909 1.01116 0.73205 0.71521 0.72217 1.93585 1.79634 1.54561 1.67286 1.93637 1.83448 1.86065 1.30597 1.55356 1.24376 1.89539 1.15213 1.20275 0.95638 0.94708 0.80451 1.22709 1.03918 0.96551 1.01850 1.22059 0.90295 1.03915 1.04053 1.22799 1.02226 0.99047 1.01840 1.84385 1.62621 1.25485 1.27854 0.91914 0.91930 0.91327 0.91365 0.78441 0.76416 0.72274 0.90283 0.90569 0.91554 0.90521 0.90332 0.89955 0.93356 0.89440 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.41 9.03 71.98 0.65 -6.76 16 2 C 0.19 9.75 2.16 29.85 0.06 9.81 16 3 H 0.04 2.23 6.22 -2.39 -0.01 2.22 16 4 C -0.55 -32.13 9.48 25.60 0.24 -31.89 16 5 H 0.04 2.96 8.06 -2.91 -0.02 2.93 16 6 C 0.03 1.91 5.45 84.66 0.46 2.37 16 7 N -0.93 -56.44 13.96 21.45 0.30 -56.14 16 8 Si 0.94 43.14 24.37 68.60 1.67 44.81 16 9 H -0.25 -10.64 6.87 99.48 0.68 -9.96 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.25 -11.07 6.53 99.48 0.65 -10.42 16 12 O -0.34 -16.46 9.88 -56.76 -0.56 -17.02 16 13 C 0.53 21.74 7.90 69.97 0.55 22.29 16 14 O -0.50 -21.11 16.13 19.45 0.31 -20.80 16 15 C -0.03 -1.01 7.18 24.04 0.17 -0.84 16 16 C -0.12 -2.66 10.62 22.40 0.24 -2.42 16 17 C -0.08 -1.50 10.65 22.07 0.24 -1.26 16 18 C -0.56 -13.21 4.98 67.11 0.33 -12.88 16 19 S 2.74 56.98 5.54 -56.49 -0.31 56.67 16 20 O -0.96 -27.71 15.03 -127.58 -1.92 -29.63 16 21 O -0.95 -20.84 17.89 -128.00 -2.29 -23.13 16 22 N -1.08 -14.16 5.53 -152.22 -0.84 -15.00 16 23 C 0.18 2.75 1.14 3.60 0.00 2.75 16 24 C -0.19 -3.61 8.39 71.98 0.60 -3.01 16 25 C -0.14 -1.32 8.58 71.98 0.62 -0.70 16 26 C -0.20 -4.22 6.95 71.98 0.50 -3.72 16 27 O -0.11 -3.52 8.39 -4.56 -0.04 -3.56 16 28 H 0.06 2.71 3.27 -2.39 -0.01 2.70 16 29 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.07 2.96 8.14 -2.38 -0.02 2.94 16 31 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 32 H 0.20 3.49 8.06 -2.91 -0.02 3.47 16 33 H 0.22 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.44 2.62 8.62 -96.75 -0.83 1.79 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.07 1.68 5.54 -2.39 -0.01 1.67 16 38 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.05 1.32 4.98 -2.39 -0.01 1.30 16 42 H 0.09 1.79 8.12 -2.38 -0.02 1.77 16 43 H 0.07 1.38 7.62 -2.39 -0.02 1.36 16 Total: -1.00 -78.02 363.59 1.14 -76.88 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.14 Total: 13.16 kcal Atomic # 6 Polarization: -30.93 SS G_CDS: 4.68 Total: -26.25 kcal Atomic # 7 Polarization: -70.59 SS G_CDS: -0.54 Total: -71.14 kcal Atomic # 8 Polarization: -89.64 SS G_CDS: -4.49 Total: -94.14 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.67 Total: 44.81 kcal Atomic # 16 Polarization: 56.98 SS G_CDS: -0.31 Total: 56.67 kcal Total: -78.02 1.14 -76.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113687174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.906 kcal (2) G-P(sol) polarization free energy of solvation -78.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds