Wall clock time and date at job start Wed Apr 1 2020 04:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46493 * 120.00444 * 2 1 4 4 C 1.50701 * 109.47177 * 274.72646 * 3 2 1 5 5 H 1.07996 * 119.99972 * 359.97438 * 4 3 2 6 6 C 1.37887 * 119.99644 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99535 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00352 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47016 * 89.99648 * 8 6 4 10 10 H 1.48490 * 109.47144 * 210.00167 * 8 6 4 11 11 H 1.48510 * 109.46829 * 330.00190 * 8 6 4 12 12 S 1.65608 * 119.99583 * 179.72681 * 2 1 3 13 13 O 1.42100 * 106.40059 * 203.54152 * 12 2 1 14 14 O 1.42096 * 106.40050 * 336.46185 * 12 2 1 15 15 N 1.65599 * 107.21718 * 90.00246 * 12 2 1 16 16 C 1.47083 * 120.87957 * 269.71773 * 15 12 2 17 17 C 1.53699 * 108.27495 * 128.75578 * 16 15 12 18 18 N 1.46904 * 109.25783 * 54.08377 * 17 16 15 19 19 C 1.39613 * 111.00092 * 172.60525 * 18 17 16 20 20 C 1.34091 * 125.23729 * 304.02574 * 19 18 17 21 21 C 1.38588 * 114.71756 * 179.79458 * 20 19 18 22 22 C 1.33222 * 114.98285 * 0.49641 * 21 20 19 23 23 S 1.75858 * 109.74640 * 359.73142 * 22 21 20 24 24 C 1.46892 * 111.26793 * 296.75799 * 18 17 16 25 25 C 1.47082 * 120.88437 * 89.99852 * 15 12 2 26 26 H 1.08995 * 109.47693 * 270.27497 * 1 2 3 27 27 H 1.09003 * 109.47006 * 30.27410 * 1 2 3 28 28 H 1.09004 * 109.47665 * 150.27102 * 1 2 3 29 29 H 1.09004 * 109.46868 * 34.72321 * 3 2 1 30 30 H 1.09004 * 109.47439 * 154.72444 * 3 2 1 31 31 H 0.97001 * 119.99867 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.63211 * 248.52671 * 16 15 12 33 33 H 1.09006 * 109.62825 * 9.10657 * 16 15 12 34 34 H 1.08999 * 109.64758 * 294.08072 * 17 16 15 35 35 H 1.09006 * 109.44062 * 173.96171 * 17 16 15 36 36 H 1.08005 * 122.64417 * 359.97438 * 20 19 18 37 37 H 1.08007 * 122.50643 * 180.25228 * 21 20 19 38 38 H 1.08002 * 125.12523 * 179.73725 * 22 21 20 39 39 H 1.09002 * 109.49071 * 303.14309 * 24 18 17 40 40 H 1.09000 * 109.51695 * 183.07639 * 24 18 17 41 41 H 1.09001 * 109.62307 * 350.89699 * 25 15 12 42 42 H 1.08998 * 109.62826 * 111.28017 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3473 1.7622 -1.4160 5 1 1.9382 1.1881 -2.2341 6 6 3.0068 2.9468 -1.6669 7 7 3.1371 3.3778 -2.9026 8 14 3.7139 3.9402 -0.2518 9 1 5.1100 3.5062 0.0087 10 1 3.7015 5.3825 -0.6048 11 1 2.8922 3.7214 0.9657 12 16 2.2929 -1.4342 0.0068 13 8 3.5758 -1.1544 0.5500 14 8 1.4111 -2.4039 0.5559 15 7 2.5380 -1.8663 -1.5729 16 6 1.5594 -2.6994 -2.2882 17 6 1.2115 -2.0036 -3.6138 18 7 2.4493 -1.7257 -4.3546 19 6 2.1688 -1.2461 -5.6354 20 6 1.4133 -1.8736 -6.5483 21 6 1.2746 -1.1969 -7.7498 22 6 1.9201 -0.0336 -7.8182 23 16 2.7582 0.2708 -6.3024 24 6 3.3118 -0.7912 -3.6195 25 6 3.7429 -1.4322 -2.2961 26 1 -0.3634 0.0049 1.0276 27 1 -0.3633 0.8875 -0.5181 28 1 -0.3634 -0.8924 -0.5096 29 1 1.6477 2.0056 0.5854 30 1 3.1840 1.1186 0.4388 31 1 3.6007 4.2113 -3.0792 32 1 1.9904 -3.6804 -2.4882 33 1 0.6594 -2.8083 -1.6830 34 1 0.6912 -1.0675 -3.4108 35 1 0.5703 -2.6547 -4.2080 36 1 0.9470 -2.8296 -6.3610 37 1 0.6902 -1.5857 -8.5708 38 1 1.9275 0.6235 -8.6753 39 1 2.7623 0.1280 -3.4165 40 1 4.1942 -0.5629 -4.2175 41 1 4.2871 -0.7028 -1.6961 42 1 4.3814 -2.2931 -2.4938 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127615802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:23 Heat of formation + Delta-G solvation = -15.258240 kcal Electronic energy + Delta-G solvation = -27818.161926 eV Core-core repulsion = 24052.495611 eV Total energy + Delta-G solvation = -3765.666315 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.32696 -37.05548 -36.87629 -35.69748 -35.38210 -34.21975 -32.53668 -31.04846 -28.59817 -28.46893 -25.84557 -25.24181 -23.85628 -22.95658 -22.05175 -20.52710 -18.93096 -18.62809 -17.92341 -17.09817 -16.97793 -16.69457 -15.92160 -15.49930 -14.83272 -14.69028 -14.56017 -14.25482 -14.06354 -13.88719 -13.71780 -13.17286 -12.64455 -12.61913 -12.50695 -12.35396 -12.28242 -12.14812 -11.93299 -11.79310 -11.65709 -11.44909 -11.31596 -11.15808 -11.06275 -10.91410 -10.68499 -10.49864 -10.34690 -10.27398 -9.78327 -9.46836 -8.80044 -8.70245 -8.17371 -8.14988 -7.55767 -6.23168 -4.24695 1.07964 1.29722 1.83167 2.31041 2.96186 3.20785 3.26019 3.30493 3.32584 3.84312 3.99794 4.28483 4.72475 4.80861 5.09358 5.11489 5.25698 5.33272 5.36660 5.45446 5.49219 5.61620 5.64937 5.71874 5.79919 5.91964 5.92475 6.03058 6.11780 6.15716 6.28766 6.35285 6.42049 6.46617 6.61689 6.72883 6.79577 7.00170 7.03882 7.16812 7.31052 7.47546 8.32588 8.76841 9.36916 10.87204 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.010307 B = 0.005736 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.974296 B = 4880.379715 C = 6780.516549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.992 5.992 3 C 0.213 3.787 4 C -0.546 4.546 5 H 0.083 0.917 6 C 0.080 3.920 7 N -0.885 5.885 8 Si 0.866 3.134 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.265 1.265 12 S 2.787 3.213 13 O -0.977 6.977 14 O -0.994 6.994 15 N -1.005 6.005 16 C 0.130 3.870 17 C 0.045 3.955 18 N -0.450 5.450 19 C 0.024 3.976 20 C -0.193 4.193 21 C -0.116 4.116 22 C -0.249 4.249 23 S 0.123 5.877 24 C 0.021 3.979 25 C 0.142 3.858 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.036 0.964 30 H 0.042 0.958 31 H 0.266 0.734 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.157 0.843 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.860 -8.900 -5.346 11.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.833 5.833 3 C 0.089 3.911 4 C -0.585 4.585 5 H 0.101 0.899 6 C -0.124 4.124 7 N -0.522 5.522 8 Si 0.693 3.307 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.190 1.190 12 S 2.796 3.204 13 O -0.961 6.961 14 O -0.978 6.978 15 N -0.844 5.844 16 C 0.004 3.996 17 C -0.084 4.084 18 N -0.167 5.167 19 C -0.192 4.192 20 C -0.226 4.226 21 C -0.147 4.147 22 C -0.385 4.385 23 S 0.384 5.616 24 C -0.108 4.108 25 C 0.016 3.984 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.174 0.826 39 H 0.115 0.885 40 H 0.105 0.895 41 H 0.122 0.878 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.325 -8.507 -4.106 9.728 hybrid contribution -1.001 0.543 -0.408 1.210 sum -3.326 -7.964 -4.514 9.740 Atomic orbital electron populations 1.21245 0.79678 1.02377 1.00740 1.57477 1.14367 1.22757 1.88741 1.19619 0.92001 0.80850 0.98616 1.21442 1.37664 1.07698 0.91663 0.89914 1.24815 0.95222 0.96979 0.95374 1.69875 1.41800 1.21984 1.18555 0.86996 0.80532 0.79787 0.83372 1.19737 1.21095 1.18958 1.01762 0.73070 0.72623 0.72914 1.93563 1.40761 1.85237 1.76571 1.93541 1.67307 1.60226 1.76731 1.58264 1.29819 1.64388 1.31957 1.21523 0.92179 0.93968 0.91939 1.22770 0.89961 1.01038 0.94601 1.58914 1.15997 1.42152 0.99621 1.23742 1.03648 0.96176 0.95599 1.19824 1.06632 1.02636 0.93500 1.19839 1.01707 0.95010 0.98131 1.25436 1.07371 1.02904 1.02795 1.85228 1.51919 1.17137 1.07339 1.22976 0.97924 0.95166 0.94698 1.21335 0.85692 0.99362 0.92034 0.93592 0.90599 0.92758 0.94629 0.94009 0.92440 0.90532 0.89032 0.92449 0.89416 0.84767 0.85023 0.82559 0.88513 0.89538 0.87799 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.69 10.31 59.84 0.62 2.31 16 2 N -0.99 -19.05 3.22 -123.06 -0.40 -19.44 16 3 C 0.21 4.70 4.48 -5.20 -0.02 4.67 16 4 C -0.55 -13.29 9.74 -34.44 -0.34 -13.63 16 5 H 0.08 2.11 5.89 -52.49 -0.31 1.80 16 6 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 7 N -0.89 -23.80 13.96 55.43 0.77 -23.03 16 8 Si 0.87 19.86 27.47 -169.99 -4.67 15.19 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.26 -5.87 6.54 56.52 0.37 -5.51 16 12 S 2.79 52.61 6.08 -107.50 -0.65 51.96 16 13 O -0.98 -21.12 15.46 -57.17 -0.88 -22.01 16 14 O -0.99 -19.20 15.98 -57.17 -0.91 -20.11 16 15 N -1.01 -16.51 3.38 -112.97 -0.38 -16.89 16 16 C 0.13 1.76 6.56 -3.36 -0.02 1.74 16 17 C 0.04 0.61 5.49 -3.46 -0.02 0.59 16 18 N -0.45 -6.86 4.71 -171.70 -0.81 -7.66 16 19 C 0.02 0.37 6.03 -15.46 -0.09 0.28 16 20 C -0.19 -2.62 9.48 -40.91 -0.39 -3.01 16 21 C -0.12 -1.46 10.18 -41.20 -0.42 -1.88 16 22 C -0.25 -3.34 11.21 28.98 0.32 -3.02 16 23 S 0.12 1.96 21.46 -107.50 -2.31 -0.34 16 24 C 0.02 0.35 4.70 -3.70 -0.02 0.33 16 25 C 0.14 2.35 6.53 -3.60 -0.02 2.32 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 28 H 0.05 0.75 7.79 -51.93 -0.40 0.35 16 29 H 0.04 0.78 7.16 -51.93 -0.37 0.41 16 30 H 0.04 0.97 6.34 -51.93 -0.33 0.64 16 31 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.09 1.15 7.21 -51.93 -0.37 0.77 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.09 1.00 7.16 -51.93 -0.37 0.63 16 36 H 0.13 1.58 7.60 -52.48 -0.40 1.19 16 37 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 38 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.10 1.98 5.67 -51.93 -0.29 1.69 16 40 H 0.09 1.45 7.43 -51.93 -0.39 1.07 16 41 H 0.10 1.90 7.22 -51.93 -0.37 1.52 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 357.18 15.07 5.38 5.38 Total: -1.00 -29.32 357.18 -11.09 -40.42 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.74 Total: 3.87 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -0.50 Total: -7.33 kcal Atomic # 7 Polarization: -66.21 SS G_CDS: -0.81 Total: -67.03 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -1.80 Total: -42.12 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.67 Total: 15.19 kcal Atomic # 16 Polarization: 54.57 SS G_CDS: -2.96 Total: 51.61 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.32 -11.09 -40.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127615802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.158 kcal (2) G-P(sol) polarization free energy of solvation -29.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds