Wall clock time and date at job start Wed Apr 1 2020 04:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46493 * 120.00444 * 2 1 4 4 C 1.50701 * 109.47177 * 274.72646 * 3 2 1 5 5 H 1.07996 * 119.99972 * 359.97438 * 4 3 2 6 6 C 1.37887 * 119.99644 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99535 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00352 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47016 * 89.99648 * 8 6 4 10 10 H 1.48490 * 109.47144 * 210.00167 * 8 6 4 11 11 H 1.48510 * 109.46829 * 330.00190 * 8 6 4 12 12 S 1.65608 * 119.99583 * 179.72681 * 2 1 3 13 13 O 1.42100 * 106.40059 * 203.54152 * 12 2 1 14 14 O 1.42096 * 106.40050 * 336.46185 * 12 2 1 15 15 N 1.65599 * 107.21718 * 90.00246 * 12 2 1 16 16 C 1.47083 * 120.87957 * 269.71773 * 15 12 2 17 17 C 1.53699 * 108.27495 * 128.75578 * 16 15 12 18 18 N 1.46904 * 109.25783 * 54.08377 * 17 16 15 19 19 C 1.39613 * 111.00092 * 172.60525 * 18 17 16 20 20 C 1.34091 * 125.23729 * 304.02574 * 19 18 17 21 21 C 1.38588 * 114.71756 * 179.79458 * 20 19 18 22 22 C 1.33222 * 114.98285 * 0.49641 * 21 20 19 23 23 S 1.75858 * 109.74640 * 359.73142 * 22 21 20 24 24 C 1.46892 * 111.26793 * 296.75799 * 18 17 16 25 25 C 1.47082 * 120.88437 * 89.99852 * 15 12 2 26 26 H 1.08995 * 109.47693 * 270.27497 * 1 2 3 27 27 H 1.09003 * 109.47006 * 30.27410 * 1 2 3 28 28 H 1.09004 * 109.47665 * 150.27102 * 1 2 3 29 29 H 1.09004 * 109.46868 * 34.72321 * 3 2 1 30 30 H 1.09004 * 109.47439 * 154.72444 * 3 2 1 31 31 H 0.97001 * 119.99867 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.63211 * 248.52671 * 16 15 12 33 33 H 1.09006 * 109.62825 * 9.10657 * 16 15 12 34 34 H 1.08999 * 109.64758 * 294.08072 * 17 16 15 35 35 H 1.09006 * 109.44062 * 173.96171 * 17 16 15 36 36 H 1.08005 * 122.64417 * 359.97438 * 20 19 18 37 37 H 1.08007 * 122.50643 * 180.25228 * 21 20 19 38 38 H 1.08002 * 125.12523 * 179.73725 * 22 21 20 39 39 H 1.09002 * 109.49071 * 303.14309 * 24 18 17 40 40 H 1.09000 * 109.51695 * 183.07639 * 24 18 17 41 41 H 1.09001 * 109.62307 * 350.89699 * 25 15 12 42 42 H 1.08998 * 109.62826 * 111.28017 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3473 1.7622 -1.4160 5 1 1.9382 1.1881 -2.2341 6 6 3.0068 2.9468 -1.6669 7 7 3.1371 3.3778 -2.9026 8 14 3.7139 3.9402 -0.2518 9 1 5.1100 3.5062 0.0087 10 1 3.7015 5.3825 -0.6048 11 1 2.8922 3.7214 0.9657 12 16 2.2929 -1.4342 0.0068 13 8 3.5758 -1.1544 0.5500 14 8 1.4111 -2.4039 0.5559 15 7 2.5380 -1.8663 -1.5729 16 6 1.5594 -2.6994 -2.2882 17 6 1.2115 -2.0036 -3.6138 18 7 2.4493 -1.7257 -4.3546 19 6 2.1688 -1.2461 -5.6354 20 6 1.4133 -1.8736 -6.5483 21 6 1.2746 -1.1969 -7.7498 22 6 1.9201 -0.0336 -7.8182 23 16 2.7582 0.2708 -6.3024 24 6 3.3118 -0.7912 -3.6195 25 6 3.7429 -1.4322 -2.2961 26 1 -0.3634 0.0049 1.0276 27 1 -0.3633 0.8875 -0.5181 28 1 -0.3634 -0.8924 -0.5096 29 1 1.6477 2.0056 0.5854 30 1 3.1840 1.1186 0.4388 31 1 3.6007 4.2113 -3.0792 32 1 1.9904 -3.6804 -2.4882 33 1 0.6594 -2.8083 -1.6830 34 1 0.6912 -1.0675 -3.4108 35 1 0.5703 -2.6547 -4.2080 36 1 0.9470 -2.8296 -6.3610 37 1 0.6902 -1.5857 -8.5708 38 1 1.9275 0.6235 -8.6753 39 1 2.7623 0.1280 -3.4165 40 1 4.1942 -0.5629 -4.2175 41 1 4.2871 -0.7028 -1.6961 42 1 4.3814 -2.2931 -2.4938 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127615802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:22 Heat of formation + Delta-G solvation = -35.811913 kcal Electronic energy + Delta-G solvation = -27819.053200 eV Core-core repulsion = 24052.495611 eV Total energy + Delta-G solvation = -3766.557589 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.52136 -38.43850 -38.17999 -37.28747 -36.95757 -35.43778 -34.44698 -32.28741 -30.21194 -29.74969 -27.05381 -26.75251 -25.07137 -24.12550 -23.76719 -21.84114 -20.10500 -19.90151 -19.36940 -18.81554 -18.53697 -18.08983 -17.40450 -16.68311 -16.39618 -16.00610 -15.85198 -15.73784 -15.31762 -15.13626 -15.11833 -14.61555 -14.39793 -14.12550 -13.83298 -13.61246 -13.50090 -13.47282 -13.35998 -13.18214 -13.10979 -13.01737 -12.89535 -12.47586 -12.36566 -12.36131 -12.32733 -12.02080 -11.93375 -11.60105 -11.44679 -10.78377 -10.71427 -10.07926 -9.72084 -9.37077 -8.72998 -8.21200 -6.24855 -0.40047 0.19285 0.68230 1.21499 1.36753 1.41906 1.46626 1.83597 1.94157 2.36966 2.46619 2.70522 3.11576 3.27502 3.56417 3.95054 3.98984 4.09812 4.23046 4.29433 4.33523 4.35691 4.54927 4.61193 4.63256 4.67060 4.74085 4.76835 4.88375 4.93257 4.98716 5.04026 5.05302 5.14960 5.32958 5.38410 5.45175 5.53176 5.57458 5.79042 5.82534 6.00971 6.36488 6.79543 7.38299 8.90451 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.010307 B = 0.005736 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.974296 B = 4880.379715 C = 6780.516549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.999 5.999 3 C 0.219 3.781 4 C -0.533 4.533 5 H 0.065 0.935 6 C 0.034 3.966 7 N -0.920 5.920 8 Si 0.911 3.089 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.250 1.250 12 S 2.797 3.203 13 O -1.008 7.008 14 O -0.995 6.995 15 N -1.004 6.004 16 C 0.126 3.874 17 C 0.046 3.954 18 N -0.443 5.443 19 C 0.006 3.994 20 C -0.179 4.179 21 C -0.113 4.113 22 C -0.239 4.239 23 S 0.039 5.961 24 C 0.035 3.965 25 C 0.144 3.856 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.032 0.968 31 H 0.264 0.736 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.034 0.966 35 H 0.119 0.881 36 H 0.161 0.839 37 H 0.168 0.832 38 H 0.178 0.822 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.424 -10.922 -5.800 13.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.839 5.839 3 C 0.094 3.906 4 C -0.572 4.572 5 H 0.083 0.917 6 C -0.166 4.166 7 N -0.559 5.559 8 Si 0.736 3.264 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.173 1.173 12 S 2.807 3.193 13 O -0.992 6.992 14 O -0.979 6.979 15 N -0.844 5.844 16 C 0.001 3.999 17 C -0.082 4.082 18 N -0.160 5.160 19 C -0.209 4.209 20 C -0.212 4.212 21 C -0.143 4.143 22 C -0.375 4.375 23 S 0.299 5.701 24 C -0.094 4.094 25 C 0.018 3.982 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.053 0.947 35 H 0.137 0.863 36 H 0.178 0.822 37 H 0.186 0.814 38 H 0.195 0.805 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.926 -10.547 -4.545 12.137 hybrid contribution -0.604 1.081 -0.395 1.299 sum -4.530 -9.467 -4.940 11.599 Atomic orbital electron populations 1.21482 0.77778 1.03295 1.02208 1.57456 1.15747 1.21689 1.89050 1.19380 0.92084 0.82262 0.96891 1.21594 1.36147 1.06941 0.92478 0.91668 1.25430 0.95981 0.98218 0.97001 1.69996 1.43263 1.22451 1.20154 0.86273 0.79924 0.78503 0.81710 1.20024 1.21094 1.17343 1.01332 0.72319 0.72384 0.73285 1.93519 1.42347 1.85630 1.77732 1.93532 1.67167 1.60031 1.77207 1.58100 1.30370 1.64572 1.31359 1.21829 0.92185 0.94291 0.91616 1.22863 0.89611 1.00581 0.95174 1.59024 1.16425 1.41036 0.99545 1.23823 1.05185 0.95796 0.96087 1.20208 1.04843 1.03104 0.93057 1.20253 1.01114 0.94248 0.98687 1.25680 1.06609 1.03666 1.01582 1.85556 1.54130 1.19771 1.10611 1.22666 0.97585 0.94135 0.95058 1.21302 0.85963 0.99682 0.91271 0.91796 0.91020 0.90621 0.94017 0.95023 0.92716 0.88175 0.87612 0.94749 0.86276 0.82192 0.81439 0.80461 0.92408 0.90214 0.90194 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.97 10.31 127.77 1.32 4.29 16 2 N -1.00 -37.75 3.22 -543.24 -1.75 -39.50 16 3 C 0.22 9.66 4.48 85.63 0.38 10.04 16 4 C -0.53 -26.57 9.74 25.60 0.25 -26.32 16 5 H 0.07 3.47 5.89 -2.91 -0.02 3.45 16 6 C 0.03 1.80 5.47 84.66 0.46 2.27 16 7 N -0.92 -51.37 13.96 21.45 0.30 -51.07 16 8 Si 0.91 41.19 27.47 68.60 1.88 43.07 16 9 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 11 H -0.25 -10.58 6.54 99.48 0.65 -9.93 16 12 S 2.80 103.41 6.08 -56.49 -0.34 103.07 16 13 O -1.01 -43.68 15.46 -128.00 -1.98 -45.66 16 14 O -1.00 -36.51 15.98 -128.00 -2.05 -38.56 16 15 N -1.00 -32.09 3.38 -511.31 -1.73 -33.82 16 16 C 0.13 3.10 6.56 86.50 0.57 3.67 16 17 C 0.05 1.17 5.49 86.54 0.48 1.64 16 18 N -0.44 -13.16 4.71 -697.13 -3.28 -16.44 16 19 C 0.01 0.18 6.03 82.51 0.50 0.68 16 20 C -0.18 -4.35 9.48 21.41 0.20 -4.15 16 21 C -0.11 -2.50 10.18 21.22 0.22 -2.28 16 22 C -0.24 -6.08 11.21 66.69 0.75 -5.34 16 23 S 0.04 1.28 21.46 -56.49 -1.21 0.07 16 24 C 0.03 1.22 4.70 86.38 0.41 1.63 16 25 C 0.14 4.81 6.53 86.35 0.56 5.37 16 26 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 28 H 0.08 1.95 7.79 -2.38 -0.02 1.93 16 29 H 0.04 1.79 7.16 -2.39 -0.02 1.78 16 30 H 0.03 1.48 6.34 -2.39 -0.02 1.46 16 31 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 32 H 0.10 2.06 8.14 -2.39 -0.02 2.05 16 33 H 0.11 2.33 7.21 -2.38 -0.02 2.31 16 34 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.12 2.29 7.16 -2.38 -0.02 2.27 16 36 H 0.16 3.05 7.60 -2.91 -0.02 3.02 16 37 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.18 3.63 8.06 -2.91 -0.02 3.61 16 39 H 0.06 2.52 5.67 -2.39 -0.01 2.51 16 40 H 0.08 2.85 7.43 -2.39 -0.02 2.84 16 41 H 0.08 3.05 7.22 -2.39 -0.02 3.03 16 42 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -64.31 357.18 -3.10 -67.41 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.98 Total: 19.92 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 6.09 Total: -8.49 kcal Atomic # 7 Polarization: -134.37 SS G_CDS: -6.47 Total: -140.84 kcal Atomic # 8 Polarization: -80.19 SS G_CDS: -4.02 Total: -84.22 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 1.88 Total: 43.07 kcal Atomic # 16 Polarization: 104.70 SS G_CDS: -1.56 Total: 103.14 kcal Total: -64.31 -3.10 -67.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127615802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.598 kcal (2) G-P(sol) polarization free energy of solvation -64.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds