Wall clock time and date at job start Wed Apr 1 2020 03:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81396 * 109.47106 * 2 1 4 4 C 1.81403 * 102.99875 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.46955 * 305.00038 * 4 3 2 6 6 C 1.52999 * 109.47009 * 65.00108 * 4 3 2 7 7 C 1.50703 * 109.46843 * 185.00027 * 4 3 2 8 8 N 1.29942 * 126.29030 * 315.02227 * 7 4 3 9 9 O 1.21295 * 110.25076 * 180.02562 * 8 7 4 10 10 C 1.33637 * 109.81224 * 359.97438 * 9 8 7 11 11 C 1.50703 * 126.55125 * 179.97438 * 10 9 8 12 12 N 1.46506 * 109.47289 * 270.02696 * 11 10 9 13 13 C 1.46498 * 119.99755 * 270.00096 * 12 11 10 14 14 C 1.34774 * 119.99868 * 89.99907 * 12 11 10 15 15 O 1.21289 * 120.00200 * 0.02562 * 14 12 11 16 16 C 1.50696 * 120.00038 * 180.02562 * 14 12 11 17 17 S 1.80998 * 109.47275 * 179.97438 * 16 14 12 18 18 C 1.76205 * 99.99958 * 180.02562 * 17 16 14 19 19 H 1.07996 * 120.00217 * 359.97438 * 18 17 16 20 20 C 1.38800 * 119.99974 * 180.02562 * 18 17 16 21 21 N 1.31626 * 119.99928 * 179.97438 * 20 18 17 22 22 Si 1.86808 * 119.99961 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47019 * 90.00173 * 22 20 18 24 24 H 1.48494 * 109.46990 * 210.00310 * 22 20 18 25 25 H 1.48503 * 109.46938 * 330.00325 * 22 20 18 26 26 N 1.31129 * 106.90087 * 0.23128 * 10 9 8 27 27 H 1.09001 * 109.46953 * 300.00336 * 1 2 3 28 28 H 1.09004 * 109.47463 * 59.99881 * 1 2 3 29 29 H 1.09002 * 109.47268 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46627 * 240.00072 * 2 1 3 31 31 H 1.08996 * 109.46880 * 119.99967 * 2 1 3 32 32 H 1.08994 * 109.47319 * 60.00154 * 6 4 3 33 33 H 1.08999 * 109.46871 * 180.02562 * 6 4 3 34 34 H 1.08998 * 109.46894 * 299.99630 * 6 4 3 35 35 H 1.09001 * 109.47438 * 150.02477 * 11 10 9 36 36 H 1.09004 * 109.47113 * 30.02733 * 11 10 9 37 37 H 1.08999 * 109.46923 * 90.00257 * 13 12 11 38 38 H 1.08997 * 109.46694 * 209.99389 * 13 12 11 39 39 H 1.08995 * 109.47258 * 329.99665 * 13 12 11 40 40 H 1.09003 * 109.47424 * 300.00151 * 16 14 12 41 41 H 1.09003 * 109.47504 * 60.00089 * 16 14 12 42 42 H 0.97002 * 120.00036 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5057 -0.0008 5 1 4.2320 0.8790 0.8408 6 6 4.3746 0.8427 -1.3084 7 6 4.5958 2.8555 0.1230 8 7 4.2726 3.9318 -0.5295 9 8 4.9934 4.8518 -0.2051 10 6 5.8712 4.4374 0.7133 11 6 6.9393 5.2703 1.3741 12 7 8.1722 5.1983 0.5859 13 6 9.1597 4.1527 0.8644 14 6 8.3977 6.0941 -0.3955 15 8 7.5803 6.9601 -0.6258 16 6 9.6655 6.0199 -1.2067 17 16 9.6737 7.3479 -2.4364 18 6 11.2204 7.0310 -3.2187 19 1 11.8351 6.2077 -2.8862 20 6 11.6493 7.8403 -4.2617 21 7 12.8050 7.6038 -4.8457 22 14 10.5864 9.2649 -4.8364 23 1 10.9412 10.4872 -4.0715 24 1 10.8174 9.5023 -6.2840 25 1 9.1556 8.9375 -4.6106 26 7 5.6293 3.1662 0.9257 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.0797 1.4695 -2.1500 33 1 5.4576 0.7195 -1.3087 34 1 3.8982 -0.1335 -1.3979 35 1 7.1274 4.8900 2.3782 36 1 6.6066 6.3065 1.4345 37 1 8.9378 3.2732 0.2600 38 1 10.1563 4.5198 0.6195 39 1 9.1196 3.8872 1.9208 40 1 10.5261 6.1299 -0.5468 41 1 9.7170 5.0560 -1.7131 42 1 13.1045 8.1691 -5.5748 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135483217.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:15 Heat of formation + Delta-G solvation = 10.532811 kcal Electronic energy + Delta-G solvation = -24867.804139 eV Core-core repulsion = 21103.256208 eV Total energy + Delta-G solvation = -3764.547931 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.81031 -41.00358 -37.63696 -37.04037 -35.01553 -34.67389 -33.80839 -32.94469 -31.40705 -28.97334 -27.86876 -27.10553 -26.38053 -24.76709 -24.38586 -22.48623 -20.94153 -19.66970 -19.34794 -18.79230 -18.19089 -17.62374 -17.28029 -17.15973 -16.98443 -16.13720 -16.07449 -15.80707 -15.65223 -15.51032 -14.94664 -14.69416 -14.56840 -14.24045 -13.94358 -13.70112 -13.64361 -13.39675 -13.34141 -13.31585 -13.04790 -13.00787 -12.97688 -12.70152 -12.61506 -12.40609 -12.26077 -12.17111 -11.88352 -11.36664 -11.17322 -10.99540 -10.92221 -10.53240 -10.11083 -9.00917 -8.87681 -8.51915 -6.22743 -0.16071 0.23628 0.93411 1.07139 1.30692 1.31626 1.42372 1.46282 1.53719 1.79173 2.04540 2.24320 2.31010 2.66867 2.86472 2.86958 3.49623 3.56498 3.67489 3.97389 3.99671 4.02983 4.12708 4.14554 4.27252 4.27957 4.41885 4.43295 4.50144 4.52662 4.60377 4.66194 4.73183 4.83716 4.87408 4.95094 4.98289 5.20806 5.25511 5.70415 6.00810 6.11353 6.91412 6.93682 6.94640 8.60201 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.018274 B = 0.002187 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.885755 B =12798.900929 C =13321.240059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.080 4.080 3 S -0.282 6.282 4 C 0.039 3.961 5 H 0.135 0.865 6 C -0.140 4.140 7 C 0.177 3.823 8 N -0.388 5.388 9 O 0.072 5.928 10 C 0.172 3.828 11 C 0.208 3.792 12 N -0.605 5.605 13 C 0.070 3.930 14 C 0.534 3.466 15 O -0.544 6.544 16 C -0.106 4.106 17 S -0.177 6.177 18 C -0.527 4.527 19 H 0.064 0.936 20 C 0.047 3.953 21 N -0.915 5.915 22 Si 0.912 3.088 23 H -0.260 1.260 24 H -0.261 1.261 25 H -0.239 1.239 26 N -0.467 5.467 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.175 0.825 36 H 0.124 0.876 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.115 0.885 40 H 0.122 0.878 41 H 0.107 0.893 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.539 -18.593 17.408 31.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.228 4.228 3 S -0.056 6.056 4 C -0.091 4.091 5 H 0.153 0.847 6 C -0.200 4.200 7 C -0.097 4.097 8 N -0.096 5.096 9 O 0.014 5.986 10 C -0.051 4.051 11 C 0.083 3.917 12 N -0.340 5.340 13 C -0.071 4.071 14 C 0.322 3.678 15 O -0.420 6.420 16 C -0.257 4.257 17 S 0.049 5.951 18 C -0.675 4.675 19 H 0.083 0.917 20 C -0.159 4.159 21 N -0.553 5.553 22 Si 0.734 3.266 23 H -0.185 1.185 24 H -0.185 1.185 25 H -0.163 1.163 26 N -0.201 5.201 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.192 0.808 36 H 0.142 0.858 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.134 0.866 40 H 0.140 0.860 41 H 0.125 0.875 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.770 -16.724 16.546 31.382 hybrid contribution 1.875 -1.189 -0.545 2.286 sum -18.895 -17.912 16.001 30.560 Atomic orbital electron populations 1.21535 0.91335 1.03925 1.02689 1.23523 1.00679 0.91938 1.06622 1.87617 1.02897 1.16988 1.98121 1.21315 0.93390 0.89491 1.04917 0.84710 1.22088 1.02769 1.01675 0.93463 1.25333 0.94143 0.97104 0.93109 1.74737 1.15192 0.97833 1.21869 1.85396 1.34368 1.33891 1.44959 1.30092 0.94213 0.90940 0.89825 1.20325 0.77358 0.99870 0.94123 1.47829 1.19969 1.31553 1.34635 1.22219 0.91296 0.89053 1.04524 1.20184 0.87100 0.80817 0.79742 1.90735 1.47468 1.36362 1.67413 1.23285 0.99337 1.03095 0.99970 1.84777 1.27497 1.41687 1.41114 1.22434 1.04248 1.19041 1.21729 0.91734 1.25531 0.95789 0.99502 0.95070 1.70008 1.20773 1.40294 1.24237 0.85904 0.81435 0.80222 0.79060 1.18459 1.18527 1.16286 1.71837 1.14250 1.10718 1.23337 0.92206 0.92429 0.88450 0.88361 0.88221 0.92626 0.90913 0.88127 0.80781 0.85839 0.92528 0.89626 0.86629 0.85972 0.87452 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.92 71.98 0.71 -0.48 16 2 C -0.08 -0.80 6.36 71.98 0.46 -0.34 16 3 S -0.28 -5.49 20.99 -56.49 -1.19 -6.67 16 4 C 0.04 0.72 3.32 29.85 0.10 0.82 16 5 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 6 C -0.14 -2.22 9.08 71.98 0.65 -1.56 16 7 C 0.18 4.50 6.84 138.46 0.95 5.45 16 8 N -0.39 -12.04 11.96 -60.36 -0.72 -12.76 16 9 O 0.07 2.22 11.31 74.90 0.85 3.07 16 10 C 0.17 4.11 8.10 88.38 0.72 4.83 16 11 C 0.21 3.60 6.07 85.63 0.52 4.12 16 12 N -0.60 -12.97 2.86 -851.12 -2.43 -15.40 16 13 C 0.07 0.99 10.29 127.77 1.31 2.30 16 14 C 0.53 17.27 7.69 87.66 0.67 17.94 16 15 O -0.54 -21.85 15.44 -3.06 -0.05 -21.90 16 16 C -0.11 -3.83 4.71 71.23 0.34 -3.49 16 17 S -0.18 -8.81 18.55 -56.49 -1.05 -9.86 16 18 C -0.53 -30.22 10.04 67.95 0.68 -29.54 16 19 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 20 C 0.05 2.72 5.50 84.86 0.47 3.18 16 21 N -0.92 -55.26 13.97 21.65 0.30 -54.96 16 22 Si 0.91 44.88 27.74 68.60 1.90 46.78 16 23 H -0.26 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.24 -11.83 6.74 99.48 0.67 -11.16 16 26 N -0.47 -10.95 11.55 -303.24 -3.50 -14.45 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.10 0.74 7.14 -2.39 -0.02 0.73 16 31 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.10 0.99 6.92 -2.39 -0.02 0.97 16 35 H 0.17 1.35 7.89 -2.39 -0.02 1.33 16 36 H 0.12 2.24 7.42 -2.38 -0.02 2.22 16 37 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.09 1.21 6.44 -2.39 -0.02 1.19 16 39 H 0.12 0.80 7.89 -2.39 -0.02 0.78 16 40 H 0.12 3.89 7.40 -2.39 -0.02 3.87 16 41 H 0.11 3.68 8.11 -2.39 -0.02 3.66 16 42 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -79.33 383.91 2.69 -76.64 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 0.99 Total: 6.28 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 7.58 Total: 3.24 kcal Atomic # 7 Polarization: -91.22 SS G_CDS: -6.35 Total: -97.58 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: 0.80 Total: -18.83 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.90 Total: 46.78 kcal Atomic # 16 Polarization: -14.30 SS G_CDS: -2.23 Total: -16.53 kcal Total: -79.33 2.69 -76.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135483217.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.171 kcal (2) G-P(sol) polarization free energy of solvation -79.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds