Wall clock time and date at job start Wed Apr 1 2020 04:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46503 * 120.00124 * 2 1 4 4 C 1.50699 * 109.47036 * 275.00174 * 3 2 1 5 5 H 1.07994 * 120.00096 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99499 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00402 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99624 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47112 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47289 * 120.00145 * 8 6 4 11 11 H 1.48498 * 109.47097 * 240.00191 * 8 6 4 12 12 S 1.65599 * 119.99902 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40077 * 336.45712 * 12 2 1 14 14 O 1.42098 * 106.40155 * 203.54032 * 12 2 1 15 15 N 1.65597 * 107.21898 * 89.99911 * 12 2 1 16 16 C 1.46500 * 120.00032 * 65.00131 * 15 12 2 17 17 H 1.09000 * 109.46609 * 334.99975 * 16 15 12 18 18 C 1.50706 * 109.46949 * 94.99796 * 16 15 12 19 19 N 1.34777 * 119.99762 * 179.97438 * 18 16 15 20 20 O 1.21279 * 120.00072 * 359.97438 * 18 16 15 21 21 C 1.50698 * 109.46840 * 214.99728 * 16 15 12 22 22 C 1.38244 * 119.97677 * 319.72542 * 21 16 15 23 23 C 1.38201 * 120.02533 * 179.72816 * 22 21 16 24 24 C 1.38461 * 119.97175 * 0.52204 * 23 22 21 25 25 F 1.35100 * 120.02698 * 179.72782 * 24 23 22 26 26 C 1.38459 * 119.95101 * 359.75539 * 24 23 22 27 27 C 1.38203 * 119.97189 * 359.97438 * 26 24 23 28 28 H 1.08998 * 109.47151 * 269.99947 * 1 2 3 29 29 H 1.09007 * 109.47066 * 30.00085 * 1 2 3 30 30 H 1.08997 * 109.47514 * 149.99644 * 1 2 3 31 31 H 1.09004 * 109.46964 * 35.00063 * 3 2 1 32 32 H 1.09000 * 109.46680 * 155.00026 * 3 2 1 33 33 H 0.96997 * 120.00047 * 180.02562 * 7 6 4 34 34 H 0.96999 * 119.99724 * 244.99167 * 15 12 2 35 35 H 0.96999 * 120.00047 * 0.02562 * 19 18 16 36 36 H 0.97000 * 120.00317 * 179.97438 * 19 18 16 37 37 H 1.07996 * 119.98775 * 359.97438 * 22 21 16 38 38 H 1.07996 * 120.01275 * 180.29821 * 23 22 21 39 39 H 1.08001 * 120.01419 * 179.97438 * 26 24 23 40 40 H 1.08004 * 119.98710 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9289 1.1935 -2.2332 6 6 2.9997 2.9509 -1.6662 7 7 3.5025 3.6474 -0.6705 8 14 3.1787 3.5665 -3.4208 9 1 2.5322 2.6061 -4.3508 10 1 2.5270 4.8948 -3.5482 11 1 4.6198 3.6878 -3.7582 12 16 2.2929 -1.4341 -0.0006 13 8 1.4113 -2.4067 0.5434 14 8 3.5758 -1.1570 0.5439 15 7 2.5380 -1.8580 -1.5826 16 6 3.3862 -1.0270 -2.4406 17 1 3.4017 -0.0067 -2.0573 18 6 4.7875 -1.5815 -2.4501 19 7 5.7470 -0.9756 -3.1772 20 8 5.0518 -2.5728 -1.8034 21 6 2.8359 -1.0284 -3.8435 22 6 2.3387 -2.1972 -4.3893 23 6 1.8286 -2.1983 -5.6737 24 6 1.8256 -1.0307 -6.4179 25 9 1.3323 -1.0319 -7.6756 26 6 2.3291 0.1380 -5.8723 27 6 2.8335 0.1380 -4.5856 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8899 -0.5139 31 1 1.6501 2.0043 0.5895 32 1 3.1857 1.1176 0.4343 33 1 3.9653 4.4813 -0.8470 34 1 2.1201 -2.6566 -1.9410 35 1 5.5357 -0.1825 -3.6942 36 1 6.6491 -1.3322 -3.1831 37 1 2.3452 -3.1088 -3.8103 38 1 1.4358 -3.1105 -6.0981 39 1 2.3276 1.0493 -6.4520 40 1 3.2259 1.0496 -4.1596 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152658225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:52 Heat of formation + Delta-G solvation = -151.360836 kcal Electronic energy + Delta-G solvation = -30083.347222 eV Core-core repulsion = 25745.565879 eV Total energy + Delta-G solvation = -4337.781343 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.099 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.90042 -41.27890 -39.60336 -38.32462 -37.26990 -36.90310 -36.09846 -34.70024 -34.47204 -32.23688 -31.51120 -29.67203 -27.57439 -26.77174 -24.44579 -23.92678 -23.26056 -21.63397 -20.51875 -19.18213 -18.89899 -18.88756 -18.41983 -18.12245 -17.93242 -17.21926 -17.13891 -16.69082 -16.58015 -16.36765 -15.84430 -15.49436 -15.18391 -15.15375 -14.90759 -14.62929 -14.42985 -14.06800 -13.91739 -13.87407 -13.51977 -13.36855 -13.31315 -13.14707 -13.00353 -12.81237 -12.57263 -12.42239 -12.29056 -12.06477 -11.76784 -11.60967 -11.43856 -10.67211 -10.56240 -10.55056 -10.10056 -9.80129 -9.60451 -8.13094 -6.28509 -0.39136 0.02572 0.22358 1.44843 1.51254 1.56563 1.61151 1.92321 2.37731 2.45238 2.54729 2.78557 3.16868 3.22775 3.43549 3.47222 3.73608 3.91089 3.99426 4.08682 4.20658 4.28694 4.29725 4.61285 4.73524 4.85345 4.91264 4.92894 5.08894 5.10482 5.19550 5.33388 5.44509 5.50028 5.75102 5.83444 5.84261 5.89692 6.06181 6.12369 6.36557 6.84267 7.28523 7.40771 8.94818 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.008838 B = 0.006539 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3167.266234 B = 4280.853784 C = 5557.378817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.999 5.999 3 C 0.248 3.752 4 C -0.548 4.548 5 H 0.092 0.908 6 C 0.018 3.982 7 N -0.923 5.923 8 Si 0.925 3.075 9 H -0.210 1.210 10 H -0.296 1.296 11 H -0.273 1.273 12 S 2.799 3.201 13 O -1.005 7.005 14 O -1.009 7.009 15 N -1.092 6.092 16 C 0.157 3.843 17 H 0.148 0.852 18 C 0.509 3.491 19 N -0.834 5.834 20 O -0.569 6.569 21 C -0.096 4.096 22 C -0.078 4.078 23 C -0.141 4.141 24 C 0.095 3.905 25 F -0.143 7.143 26 C -0.147 4.147 27 C -0.086 4.086 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.023 0.977 32 H 0.019 0.981 33 H 0.265 0.735 34 H 0.423 0.577 35 H 0.412 0.588 36 H 0.411 0.589 37 H 0.146 0.854 38 H 0.162 0.838 39 H 0.152 0.848 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.991 -6.784 -13.412 15.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.842 5.842 3 C 0.125 3.875 4 C -0.587 4.587 5 H 0.109 0.891 6 C -0.183 4.183 7 N -0.562 5.562 8 Si 0.749 3.251 9 H -0.133 1.133 10 H -0.223 1.223 11 H -0.198 1.198 12 S 2.807 3.193 13 O -0.989 6.989 14 O -0.992 6.992 15 N -0.852 5.852 16 C 0.046 3.954 17 H 0.165 0.835 18 C 0.291 3.709 19 N -0.398 5.398 20 O -0.447 6.447 21 C -0.098 4.098 22 C -0.096 4.096 23 C -0.160 4.160 24 C 0.076 3.924 25 F -0.121 7.121 26 C -0.166 4.166 27 C -0.104 4.104 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.041 0.959 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.259 0.741 35 H 0.243 0.757 36 H 0.244 0.756 37 H 0.163 0.837 38 H 0.179 0.821 39 H 0.170 0.830 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.578 -7.610 -12.062 14.493 hybrid contribution 0.232 1.015 -1.043 1.474 sum -2.345 -6.595 -13.104 14.857 Atomic orbital electron populations 1.21493 0.77718 1.03660 1.01978 1.57521 1.15777 1.21865 1.88992 1.18960 0.90925 0.79957 0.97707 1.21935 1.36338 1.07070 0.93356 0.89062 1.25848 0.94709 0.96531 1.01196 1.70088 1.37103 1.15438 1.33574 0.86163 0.78880 0.79182 0.80895 1.13256 1.22306 1.19782 1.01246 0.72520 0.72316 0.73268 1.93527 1.67136 1.60865 1.77348 1.93554 1.42651 1.85358 1.77647 1.55492 1.61496 1.37373 1.30845 1.20039 0.86645 0.98058 0.90650 0.83487 1.21135 0.88406 0.83286 0.78060 1.43592 1.12994 1.32995 1.50248 1.90684 1.83129 1.27402 1.43501 1.19523 1.02009 0.95045 0.93261 1.20964 0.96074 0.97831 0.94750 1.21284 1.02083 0.98196 0.94412 1.17853 0.98933 0.95419 0.80201 1.91495 1.85465 1.97293 1.37874 1.21251 1.00812 0.98315 0.96221 1.21306 0.97950 0.97759 0.93422 0.92696 0.90078 0.90435 0.95911 0.96336 0.92595 0.74055 0.75732 0.75622 0.83678 0.82083 0.83048 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.05 10.31 127.77 1.32 4.37 16 2 N -1.00 -39.31 3.23 -543.22 -1.75 -41.07 16 3 C 0.25 11.63 5.28 85.63 0.45 12.09 16 4 C -0.55 -24.58 6.91 25.60 0.18 -24.40 16 5 H 0.09 3.66 6.01 -2.91 -0.02 3.65 16 6 C 0.02 0.84 5.46 84.66 0.46 1.30 16 7 N -0.92 -48.78 13.29 21.45 0.28 -48.50 16 8 Si 0.92 33.52 27.60 68.60 1.89 35.42 16 9 H -0.21 -6.12 5.26 99.48 0.52 -5.59 16 10 H -0.30 -11.53 7.11 99.48 0.71 -10.83 16 11 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 12 S 2.80 112.94 6.01 -56.49 -0.34 112.60 16 13 O -1.00 -41.41 17.21 -128.00 -2.20 -43.61 16 14 O -1.01 -49.50 16.45 -128.00 -2.11 -51.61 16 15 N -1.09 -35.97 4.97 -175.68 -0.87 -36.84 16 16 C 0.16 5.10 2.51 43.50 0.11 5.21 16 17 H 0.15 5.47 4.11 -2.39 -0.01 5.46 16 18 C 0.51 17.17 7.47 87.66 0.66 17.82 16 19 N -0.83 -20.88 8.77 -173.53 -1.52 -22.40 16 20 O -0.57 -23.22 17.27 -3.03 -0.05 -23.27 16 21 C -0.10 -2.48 4.71 -19.86 -0.09 -2.57 16 22 C -0.08 -1.65 9.14 22.26 0.20 -1.45 16 23 C -0.14 -2.64 10.03 22.31 0.22 -2.41 16 24 C 0.10 1.99 7.30 22.38 0.16 2.15 16 25 F -0.14 -3.06 17.27 44.97 0.78 -2.28 16 26 C -0.15 -3.20 10.03 22.31 0.22 -2.97 16 27 C -0.09 -2.14 8.32 22.26 0.19 -1.95 16 28 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.08 2.45 8.07 -2.38 -0.02 2.43 16 30 H 0.08 2.08 7.79 -2.39 -0.02 2.06 16 31 H 0.02 1.14 8.11 -2.38 -0.02 1.12 16 32 H 0.02 1.00 6.91 -2.39 -0.02 0.98 16 33 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 34 H 0.42 11.28 7.09 -96.75 -0.69 10.60 16 35 H 0.41 8.52 8.55 -92.71 -0.79 7.73 16 36 H 0.41 8.65 8.93 -92.71 -0.83 7.82 16 37 H 0.15 2.69 6.83 -2.91 -0.02 2.67 16 38 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 39 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 40 H 0.14 3.65 3.97 -2.91 -0.01 3.64 16 Total: -1.00 -69.35 347.96 -3.15 -72.51 By element: Atomic # 1 Polarization: 43.21 SS G_CDS: -1.34 Total: 41.87 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 4.08 Total: 7.18 kcal Atomic # 7 Polarization: -144.95 SS G_CDS: -3.86 Total: -148.81 kcal Atomic # 8 Polarization: -114.13 SS G_CDS: -4.36 Total: -118.49 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.78 Total: -2.28 kcal Atomic # 14 Polarization: 33.52 SS G_CDS: 1.89 Total: 35.42 kcal Atomic # 16 Polarization: 112.94 SS G_CDS: -0.34 Total: 112.60 kcal Total: -69.35 -3.15 -72.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152658225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.853 kcal (2) G-P(sol) polarization free energy of solvation -69.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds