Wall clock time and date at job start Wed Apr 1 2020 03:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46813 * 2 1 4 4 H 1.09000 * 109.47317 * 54.99527 * 3 2 1 5 5 C 1.50703 * 109.46784 * 174.99812 * 3 2 1 6 6 H 1.08000 * 119.99923 * 120.27803 * 5 3 2 7 7 C 1.37876 * 119.99962 * 299.99543 * 5 3 2 8 8 N 1.31514 * 119.99827 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 119.99985 * 0.02562 * 7 5 3 10 10 H 1.48492 * 109.47144 * 89.99973 * 9 7 5 11 11 H 1.48497 * 109.46890 * 209.99810 * 9 7 5 12 12 H 1.48502 * 109.47205 * 329.99788 * 9 7 5 13 13 N 1.46499 * 109.47061 * 294.99701 * 3 2 1 14 14 C 1.34777 * 120.00236 * 85.00082 * 13 3 2 15 15 O 1.21587 * 119.99560 * 0.02562 * 14 13 3 16 16 N 1.34771 * 120.00084 * 179.97438 * 14 13 3 17 17 C 1.39945 * 119.99950 * 175.38014 * 16 14 13 18 18 C 1.38848 * 120.05413 * 35.09807 * 17 16 14 19 19 C 1.38309 * 119.90531 * 179.97438 * 18 17 16 20 20 F 1.35102 * 119.99289 * 179.97438 * 19 18 17 21 21 C 1.38535 * 120.02110 * 0.02562 * 19 18 17 22 22 C 1.38227 * 120.11034 * 0.02562 * 21 19 18 23 23 S 1.76197 * 119.94938 * 179.97438 * 22 21 19 24 24 N 1.65602 * 107.21953 * 89.99893 * 23 22 21 25 25 O 1.42106 * 106.39886 * 203.53625 * 23 22 21 26 26 O 1.42096 * 106.40677 * 336.45521 * 23 22 21 27 27 C 1.38142 * 120.09505 * 359.69716 * 22 21 19 28 28 H 1.09001 * 109.47347 * 60.00698 * 1 2 3 29 29 H 1.09009 * 109.47004 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47708 * 300.00118 * 1 2 3 31 31 H 1.08997 * 109.47301 * 239.99658 * 2 1 3 32 32 H 1.09002 * 109.46826 * 119.99316 * 2 1 3 33 33 H 0.97001 * 120.00115 * 180.02562 * 8 7 5 34 34 H 0.97002 * 120.00252 * 265.00556 * 13 3 2 35 35 H 0.97000 * 120.00368 * 355.39076 * 16 14 13 36 36 H 1.07998 * 120.04723 * 359.95166 * 18 17 16 37 37 H 1.07997 * 119.94396 * 179.97438 * 21 19 18 38 38 H 0.97003 * 119.99795 * 359.97438 * 24 23 22 39 39 H 0.96994 * 119.99800 * 179.97438 * 24 23 22 40 40 H 1.07998 * 120.01050 * 180.27831 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5418 1.4443 0.1239 6 1 4.1470 1.8929 -0.6501 7 6 4.1432 0.8785 1.2281 8 7 5.4538 0.8805 1.3364 9 14 3.0962 0.1091 2.5702 10 1 2.8754 -1.3270 2.2636 11 1 3.7935 0.2351 3.8752 12 1 1.7875 0.8075 2.6387 13 7 1.6524 2.0975 -1.2518 14 6 0.4350 2.6643 -1.3671 15 8 -0.3413 2.6325 -0.4319 16 7 0.0788 3.2673 -2.5186 17 6 -1.2179 3.7705 -2.6728 18 6 -1.8823 4.3252 -1.5870 19 6 -3.1635 4.8221 -1.7430 20 9 -3.8118 5.3618 -0.6877 21 6 -3.7829 4.7658 -2.9810 22 6 -3.1226 4.2128 -4.0621 23 16 -3.9146 4.1427 -5.6345 24 7 -3.5400 5.5432 -6.4350 25 8 -3.2870 3.0896 -6.3532 26 8 -5.3123 4.1862 -5.3822 27 6 -1.8406 3.7203 -3.9129 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 5.8769 0.4821 2.1131 34 1 2.2719 2.1231 -1.9978 35 1 0.7210 3.3523 -3.2405 36 1 -1.3994 4.3682 -0.6220 37 1 -4.7835 5.1538 -3.1013 38 1 -2.9764 6.2087 -6.0102 39 1 -3.8842 5.6980 -7.3285 40 1 -1.3243 3.2926 -4.7596 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157429063.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:58 Heat of formation + Delta-G solvation = -142.270222 kcal Electronic energy + Delta-G solvation = -28004.546351 eV Core-core repulsion = 23667.159207 eV Total energy + Delta-G solvation = -4337.387144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.099 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.07596 -41.87785 -39.98510 -38.25423 -37.44724 -36.93925 -35.82731 -34.45894 -34.00942 -33.29537 -32.14273 -30.77074 -29.26255 -25.27578 -24.66861 -23.96416 -22.79766 -21.63405 -20.66439 -20.12241 -19.81675 -18.45162 -18.34170 -18.01793 -17.72648 -17.58339 -17.36762 -16.85388 -16.77774 -16.58098 -16.30051 -15.99340 -15.95664 -15.15877 -15.09627 -14.63598 -14.33327 -13.91807 -13.81885 -13.64023 -13.53002 -13.34818 -13.20769 -13.18017 -13.01365 -12.96940 -12.79104 -12.48516 -12.28062 -11.89614 -11.73340 -11.38559 -11.30843 -11.26093 -11.13089 -10.87304 -10.32376 -9.93392 -9.38466 -8.39070 -6.44502 -0.74241 -0.48393 -0.15402 1.27158 1.35661 1.44245 1.50072 1.82582 2.13988 2.25022 2.30221 2.69909 2.93430 2.97286 3.17251 3.65220 3.72032 3.80666 3.88476 4.06173 4.22675 4.30935 4.42127 4.43507 4.61983 4.77277 4.82565 4.92636 5.00482 5.09079 5.15333 5.19702 5.33580 5.37734 5.49470 5.59968 5.65598 5.87410 6.23246 6.39580 6.58578 7.05036 7.20733 7.51324 8.75896 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.020684 B = 0.002620 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.380333 B =10684.738438 C =11204.800029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.139 4.139 3 C 0.268 3.732 4 H 0.026 0.974 5 C -0.532 4.532 6 H 0.060 0.940 7 C 0.032 3.968 8 N -0.932 5.932 9 Si 0.933 3.067 10 H -0.261 1.261 11 H -0.295 1.295 12 H -0.259 1.259 13 N -0.705 5.705 14 C 0.696 3.304 15 O -0.608 6.608 16 N -0.674 5.674 17 C 0.178 3.822 18 C -0.118 4.118 19 C 0.090 3.910 20 F -0.139 7.139 21 C -0.070 4.070 22 C -0.624 4.624 23 S 2.740 3.260 24 N -1.231 6.231 25 O -0.985 6.985 26 O -0.989 6.989 27 C -0.050 4.050 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.270 0.730 34 H 0.408 0.592 35 H 0.430 0.570 36 H 0.140 0.860 37 H 0.174 0.826 38 H 0.431 0.569 39 H 0.432 0.568 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.261 10.648 -17.241 26.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.177 4.177 3 C 0.163 3.837 4 H 0.043 0.957 5 C -0.570 4.570 6 H 0.078 0.922 7 C -0.168 4.168 8 N -0.571 5.571 9 Si 0.761 3.239 10 H -0.187 1.187 11 H -0.223 1.223 12 H -0.184 1.184 13 N -0.357 5.357 14 C 0.397 3.603 15 O -0.488 6.488 16 N -0.324 5.324 17 C 0.080 3.920 18 C -0.140 4.140 19 C 0.069 3.931 20 F -0.117 7.117 21 C -0.090 4.090 22 C -0.710 4.710 23 S 2.826 3.174 24 N -0.912 5.912 25 O -0.974 6.974 26 O -0.978 6.978 27 C -0.072 4.072 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.243 0.757 35 H 0.270 0.730 36 H 0.158 0.842 37 H 0.191 0.809 38 H 0.261 0.739 39 H 0.265 0.735 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -18.271 9.655 -16.427 26.398 hybrid contribution 1.210 0.308 1.239 1.759 sum -17.061 9.963 -15.187 24.920 Atomic orbital electron populations 1.21735 0.95371 1.00328 1.01485 1.22237 0.95649 0.98673 1.01157 1.18695 0.93105 0.89272 0.82620 0.95654 1.21254 0.90194 1.38457 1.07075 0.92163 1.25488 0.95643 0.95903 0.99758 1.69962 1.10227 1.46082 1.30865 0.86089 0.79385 0.79999 0.78465 1.18675 1.22295 1.18403 1.45115 1.14188 1.58314 1.18106 1.16085 0.82865 0.78512 0.82874 1.90898 1.52591 1.65813 1.39454 1.42440 1.12177 1.59915 1.17846 1.17287 0.85470 0.95411 0.93787 1.21647 0.94720 0.96268 1.01407 1.17571 0.91319 0.99402 0.84796 1.91522 1.80834 1.83658 1.55727 1.21019 1.01020 0.97231 0.89758 1.30409 1.06095 1.13254 1.21245 1.00426 0.72374 0.72777 0.71839 1.52597 1.69129 1.38498 1.31021 1.93599 1.77309 1.55558 1.70950 1.93588 1.32290 1.86657 1.85244 1.20950 0.92493 0.96104 0.97645 0.92885 0.92640 0.94488 0.91119 0.93802 0.92067 0.75660 0.73048 0.84250 0.80871 0.73868 0.73459 0.80384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.97 8.51 71.98 0.61 -4.36 16 2 C -0.14 -5.72 5.11 30.59 0.16 -5.57 16 3 C 0.27 11.89 1.83 44.25 0.08 11.97 16 4 H 0.03 1.28 6.63 -2.39 -0.02 1.26 16 5 C -0.53 -27.55 9.31 25.60 0.24 -27.31 16 6 H 0.06 3.30 7.98 -2.91 -0.02 3.28 16 7 C 0.03 1.76 5.45 84.65 0.46 2.22 16 8 N -0.93 -54.54 13.96 21.45 0.30 -54.24 16 9 Si 0.93 43.68 24.41 68.60 1.67 45.36 16 10 H -0.26 -11.55 6.83 99.48 0.68 -10.87 16 11 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 12 H -0.26 -12.04 6.53 99.48 0.65 -11.39 16 13 N -0.71 -24.66 5.03 -461.41 -2.32 -26.97 16 14 C 0.70 22.94 6.98 179.06 1.25 24.19 16 15 O -0.61 -24.31 10.91 -3.99 -0.04 -24.35 16 16 N -0.67 -15.35 5.34 -317.20 -1.69 -17.04 16 17 C 0.18 3.99 6.30 38.14 0.24 4.23 16 18 C -0.12 -3.14 8.67 22.43 0.19 -2.95 16 19 C 0.09 2.10 7.30 22.36 0.16 2.26 16 20 F -0.14 -3.53 17.27 44.97 0.78 -2.76 16 21 C -0.07 -1.23 9.50 22.34 0.21 -1.02 16 22 C -0.62 -9.55 5.94 22.24 0.13 -9.42 16 23 S 2.74 35.59 6.28 -56.49 -0.35 35.24 16 24 N -1.23 -4.87 9.55 37.02 0.35 -4.52 16 25 O -0.99 -18.98 17.29 -128.00 -2.21 -21.19 16 26 O -0.99 -19.43 17.28 -128.00 -2.21 -21.64 16 27 C -0.05 -0.82 9.44 22.40 0.21 -0.61 16 28 H 0.05 1.96 5.65 -2.39 -0.01 1.95 16 29 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.04 1.50 7.84 -2.39 -0.02 1.48 16 31 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.04 1.92 3.21 -2.39 -0.01 1.91 16 33 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 34 H 0.41 11.98 8.56 -92.71 -0.79 11.19 16 35 H 0.43 6.32 8.84 -92.71 -0.82 5.50 16 36 H 0.14 4.49 6.22 -2.91 -0.02 4.47 16 37 H 0.17 2.36 7.61 -2.91 -0.02 2.34 16 38 H 0.43 -0.28 8.92 -96.74 -0.86 -1.15 16 39 H 0.43 0.34 8.96 -96.75 -0.87 -0.53 16 40 H 0.18 1.98 7.62 -2.91 -0.02 1.96 16 Total: -1.00 -77.49 344.73 -4.04 -81.53 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -2.26 Total: 16.93 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 3.95 Total: -6.35 kcal Atomic # 7 Polarization: -99.41 SS G_CDS: -3.36 Total: -102.77 kcal Atomic # 8 Polarization: -62.71 SS G_CDS: -4.47 Total: -67.18 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.67 Total: 45.36 kcal Atomic # 16 Polarization: 35.59 SS G_CDS: -0.35 Total: 35.24 kcal Total: -77.49 -4.04 -81.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157429063.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.741 kcal (2) G-P(sol) polarization free energy of solvation -77.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds