Wall clock time and date at job start Wed Apr 1 2020 04:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34231 * 117.00302 * 2 1 4 4 O 1.20826 * 119.99590 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00082 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.46927 * 180.02562 * 5 3 2 7 7 C 1.36884 * 119.99508 * 264.59443 * 6 5 3 8 8 H 1.07998 * 120.00402 * 142.25836 * 7 6 5 9 9 C 1.38978 * 120.00383 * 322.25280 * 7 6 5 10 10 N 1.31415 * 120.00346 * 160.41049 * 9 7 6 11 11 Si 1.86807 * 119.99598 * 340.41056 * 9 7 6 12 12 H 1.48493 * 109.47096 * 95.26007 * 11 9 7 13 13 H 1.48498 * 109.47063 * 215.26043 * 11 9 7 14 14 H 1.48497 * 109.47010 * 335.25733 * 11 9 7 15 15 C 1.34774 * 120.00351 * 84.59284 * 6 5 3 16 16 O 1.21812 * 120.00083 * 355.09334 * 15 6 5 17 17 C 1.41724 * 119.99928 * 175.09228 * 15 6 5 18 18 C 1.37990 * 126.03618 * 182.93446 * 17 15 6 19 19 C 1.39847 * 106.67840 * 180.02562 * 18 17 15 20 20 C 1.36175 * 107.18530 * 359.97438 * 19 18 17 21 21 O 1.35345 * 125.57742 * 180.02562 * 20 19 18 22 22 C 1.35875 * 117.99685 * 256.85490 * 21 20 19 23 23 C 1.38767 * 120.06305 * 354.57357 * 22 21 20 24 24 C 1.38129 * 119.93979 * 179.81228 * 23 22 21 25 25 C 1.38276 * 120.06224 * 0.44129 * 24 23 22 26 26 C 1.38271 * 120.11460 * 359.79063 * 25 24 23 27 27 C 1.38130 * 120.06179 * 359.97438 * 26 25 24 28 28 O 1.34059 * 108.85056 * 0.26215 * 20 19 18 29 29 H 1.08998 * 109.47420 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47079 * 300.00093 * 1 2 3 31 31 H 1.09001 * 109.47476 * 59.99776 * 1 2 3 32 32 H 1.08995 * 109.47646 * 59.99670 * 5 3 2 33 33 H 1.09007 * 109.47044 * 299.99397 * 5 3 2 34 34 H 0.97000 * 119.99794 * 180.02562 * 10 9 7 35 35 H 1.07994 * 126.65965 * 0.02562 * 18 17 15 36 36 H 1.07995 * 126.40603 * 180.02562 * 19 18 17 37 37 H 1.07997 * 120.02526 * 0.02562 * 23 22 21 38 38 H 1.07999 * 119.96969 * 180.20896 * 24 23 22 39 39 H 1.08000 * 119.93993 * 179.76460 * 25 24 23 40 40 H 1.08006 * 119.96857 * 179.97438 * 26 25 24 41 41 H 1.08001 * 120.03662 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.2823 3.3050 -1.1798 8 1 4.0027 4.3372 -1.3305 9 6 4.9475 2.6117 -2.1840 10 7 4.9027 3.0465 -3.4233 11 14 5.9052 1.0616 -1.7719 12 1 5.0498 -0.1278 -2.0137 13 1 7.1146 0.9842 -2.6302 14 1 6.3128 1.0964 -0.3444 15 6 4.0678 3.3564 1.1625 16 8 3.7152 2.8285 2.2022 17 6 4.5686 4.6821 1.1752 18 6 4.7632 5.4657 2.2942 19 6 5.2672 6.6901 1.8441 20 6 5.3616 6.6122 0.4879 21 8 5.8083 7.5953 -0.3281 22 6 4.8890 8.3097 -1.0286 23 6 3.5491 7.9516 -0.9838 24 6 2.6162 8.6820 -1.6937 25 6 3.0175 9.7637 -2.4559 26 6 4.3527 10.1198 -2.5061 27 6 5.2891 9.3958 -1.7942 28 8 4.9349 5.4044 0.0926 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 3.9557 0.7808 -0.8907 33 1 3.9564 0.7805 0.8893 34 1 5.3666 2.5623 -4.1242 35 1 4.5649 5.1874 3.3187 36 1 5.5327 7.5384 2.4575 37 1 3.2356 7.1046 -0.3916 38 1 1.5728 8.4058 -1.6565 39 1 2.2869 10.3311 -3.0132 40 1 4.6636 10.9649 -3.1025 41 1 6.3319 9.6740 -1.8341 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176438094.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:11 Heat of formation + Delta-G solvation = -88.876514 kcal Electronic energy + Delta-G solvation = -30497.494593 eV Core-core repulsion = 26118.146376 eV Total energy + Delta-G solvation = -4379.348217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.114 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.86908 -41.81719 -41.27137 -40.33570 -38.71067 -37.68166 -36.97995 -34.27118 -34.05668 -32.15266 -31.71303 -31.06366 -29.65148 -27.96684 -27.12635 -24.98833 -23.76497 -23.36205 -22.61465 -22.39294 -21.18901 -20.30674 -19.80888 -19.12810 -18.50755 -18.31811 -17.58542 -17.26213 -17.17746 -17.07845 -16.82855 -16.41878 -16.33369 -15.62821 -15.36891 -14.98880 -14.82208 -14.71226 -14.47443 -14.36051 -14.29720 -14.20157 -14.06628 -13.90119 -13.59082 -13.05658 -13.01303 -12.78895 -12.61824 -12.41718 -12.06804 -11.98807 -11.85656 -11.79341 -11.43898 -11.09490 -10.98463 -10.14716 -10.05771 -9.65556 -9.35630 -8.65457 -6.31292 -0.27126 0.28021 0.30849 0.86103 1.06623 1.13444 1.28796 1.36480 1.38094 1.51538 2.04530 2.15263 2.33526 2.61453 2.74389 2.91311 3.72324 3.75161 3.80877 3.84105 3.85559 3.93895 4.09161 4.14118 4.20354 4.28251 4.28989 4.39376 4.45417 4.55911 4.62763 4.72741 4.81675 4.97595 5.02363 5.20144 5.22931 5.24397 5.38382 5.48334 5.75228 5.82972 5.85882 6.04538 6.26989 6.65159 6.71139 7.03608 7.35615 8.47902 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.011315 B = 0.003850 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.958765 B = 7270.629510 C = 7426.510892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.455 3.545 4 O -0.525 6.525 5 C 0.099 3.901 6 N -0.440 5.440 7 C -0.342 4.342 8 H 0.082 0.918 9 C 0.027 3.973 10 N -0.880 5.880 11 Si 0.916 3.084 12 H -0.234 1.234 13 H -0.273 1.273 14 H -0.250 1.250 15 C 0.548 3.452 16 O -0.588 6.588 17 C -0.053 4.053 18 C -0.118 4.118 19 C -0.175 4.175 20 C 0.131 3.869 21 O -0.215 6.215 22 C 0.078 3.922 23 C -0.203 4.203 24 C -0.095 4.095 25 C -0.142 4.142 26 C -0.078 4.078 27 C -0.142 4.142 28 O -0.156 6.156 29 H 0.143 0.857 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.117 0.883 33 H 0.137 0.863 34 H 0.286 0.714 35 H 0.187 0.813 36 H 0.199 0.801 37 H 0.097 0.903 38 H 0.136 0.864 39 H 0.161 0.839 40 H 0.174 0.826 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 6.134 3.332 7.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.297 3.703 4 O -0.413 6.413 5 C -0.026 4.026 6 N -0.159 5.159 7 C -0.469 4.469 8 H 0.099 0.901 9 C -0.179 4.179 10 N -0.515 5.515 11 Si 0.738 3.262 12 H -0.159 1.159 13 H -0.198 1.198 14 H -0.173 1.173 15 C 0.341 3.659 16 O -0.476 6.476 17 C -0.105 4.105 18 C -0.139 4.139 19 C -0.195 4.195 20 C 0.037 3.963 21 O -0.128 6.128 22 C 0.037 3.963 23 C -0.221 4.221 24 C -0.113 4.113 25 C -0.160 4.160 26 C -0.096 4.096 27 C -0.161 4.161 28 O -0.053 6.053 29 H 0.161 0.839 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.134 0.866 33 H 0.155 0.845 34 H 0.096 0.904 35 H 0.204 0.796 36 H 0.216 0.784 37 H 0.115 0.885 38 H 0.154 0.846 39 H 0.178 0.822 40 H 0.191 0.809 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.889 6.061 3.263 7.138 hybrid contribution 0.048 -0.722 -0.336 0.797 sum -1.841 5.339 2.928 6.361 Atomic orbital electron populations 1.23583 0.74696 1.06011 1.02226 1.86478 1.25241 1.31939 1.84028 1.24416 0.92605 0.81753 0.71570 1.90613 1.67244 1.37695 1.45726 1.21603 0.88022 0.86350 1.06575 1.43405 1.56474 1.09661 1.06338 1.19017 1.38587 0.98616 0.90723 0.90065 1.26108 0.95930 1.01799 0.94072 1.69810 1.39100 1.41996 1.00602 0.86279 0.79826 0.79621 0.80479 1.15906 1.19834 1.17344 1.15906 0.81902 0.84664 0.83383 1.90728 1.55461 1.69233 1.32160 1.21144 1.09521 0.94614 0.85244 1.22281 1.00115 0.91985 0.99485 1.21764 1.05755 1.00994 0.90937 1.20725 1.04091 0.82236 0.89241 1.84469 1.32187 1.39358 1.56752 1.19723 0.87906 0.93450 0.95232 1.21340 0.93327 1.02301 1.05176 1.21246 0.99612 0.95052 0.95348 1.21557 0.97394 0.97311 0.99713 1.21462 0.92022 0.99278 0.96811 1.20797 1.02523 0.94254 0.98499 1.84719 1.61814 1.23118 1.35681 0.83876 0.92229 0.92526 0.86561 0.84544 0.90359 0.79554 0.78390 0.88458 0.84576 0.82158 0.80862 0.82936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.56 113.37 1.20 1.93 16 2 O -0.36 -12.65 10.56 -51.43 -0.54 -13.19 16 3 C 0.45 19.88 7.99 71.24 0.57 20.44 16 4 O -0.52 -26.52 16.06 21.97 0.35 -26.17 16 5 C 0.10 4.32 4.49 85.63 0.38 4.71 16 6 N -0.44 -22.37 1.73 -649.54 -1.12 -23.49 16 7 C -0.34 -19.10 8.36 84.08 0.70 -18.40 16 8 H 0.08 5.11 6.13 -2.91 -0.02 5.10 16 9 C 0.03 1.46 5.32 84.93 0.45 1.91 16 10 N -0.88 -49.54 13.96 21.67 0.30 -49.24 16 11 Si 0.92 38.98 24.86 68.60 1.71 40.69 16 12 H -0.23 -8.76 6.70 99.48 0.67 -8.10 16 13 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 14 H -0.25 -10.43 7.11 99.48 0.71 -9.73 16 15 C 0.55 27.49 7.24 85.10 0.62 28.11 16 16 O -0.59 -29.60 16.52 -4.71 -0.08 -29.68 16 17 C -0.05 -2.46 6.69 23.07 0.15 -2.30 16 18 C -0.12 -4.31 10.59 22.60 0.24 -4.07 16 19 C -0.18 -5.78 10.89 22.18 0.24 -5.54 16 20 C 0.13 5.31 5.92 67.34 0.40 5.71 16 21 O -0.22 -8.28 10.11 -7.29 -0.07 -8.36 16 22 C 0.08 2.76 6.66 22.52 0.15 2.91 16 23 C -0.20 -7.45 9.19 22.37 0.21 -7.24 16 24 C -0.09 -2.79 10.04 22.25 0.22 -2.57 16 25 C -0.14 -3.20 10.04 22.29 0.22 -2.98 16 26 C -0.08 -1.65 10.04 22.25 0.22 -1.43 16 27 C -0.14 -3.83 9.99 22.37 0.22 -3.61 16 28 O -0.16 -7.56 6.90 13.04 0.09 -7.47 16 29 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 31 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 32 H 0.12 4.88 3.36 -2.39 -0.01 4.87 16 33 H 0.14 5.28 7.66 -2.38 -0.02 5.27 16 34 H 0.29 14.69 8.31 -92.71 -0.77 13.92 16 35 H 0.19 5.77 8.06 -2.91 -0.02 5.75 16 36 H 0.20 4.71 8.06 -2.91 -0.02 4.69 16 37 H 0.10 4.13 6.48 -2.91 -0.02 4.12 16 38 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 39 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 40 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -75.06 360.30 7.89 -67.17 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: 1.05 Total: 32.15 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: 6.20 Total: 17.57 kcal Atomic # 7 Polarization: -71.91 SS G_CDS: -0.82 Total: -72.73 kcal Atomic # 8 Polarization: -84.60 SS G_CDS: -0.25 Total: -84.86 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 1.71 Total: 40.69 kcal Total: -75.06 7.89 -67.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176438094.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.702 kcal (2) G-P(sol) polarization free energy of solvation -75.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds