Wall clock time and date at job start Wed Apr 1 2020 02:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.46847 * 2 1 4 4 O 1.33915 * 125.61459 * 275.67371 * 3 2 1 5 5 C 1.34934 * 109.38487 * 179.97438 * 4 3 2 6 6 C 1.46469 * 125.99465 * 180.02562 * 5 4 3 7 7 O 1.21626 * 119.99828 * 179.97438 * 6 5 4 8 8 O 1.34895 * 120.00189 * 359.97438 * 6 5 4 9 9 C 1.45199 * 116.99868 * 180.02562 * 8 6 5 10 10 C 1.36639 * 108.00468 * 0.02562 * 5 4 3 11 11 C 1.35168 * 125.60740 * 95.67428 * 3 2 1 12 12 S 1.76201 * 126.43837 * 359.97438 * 11 3 2 13 13 O 1.42101 * 106.40533 * 178.77150 * 12 11 3 14 14 O 1.42098 * 106.40436 * 311.69396 * 12 11 3 15 15 N 1.65601 * 107.21597 * 65.23476 * 12 11 3 16 16 C 1.46498 * 120.00140 * 64.01111 * 15 12 11 17 17 C 1.53001 * 109.47366 * 163.88859 * 16 15 12 18 18 C 1.52994 * 109.47228 * 179.97438 * 17 16 15 19 19 C 1.50705 * 109.47121 * 179.97438 * 18 17 16 20 20 H 1.07992 * 119.99982 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99704 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00145 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99490 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47553 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47225 * 120.00492 * 23 21 19 26 26 H 1.48501 * 109.47026 * 239.99996 * 23 21 19 27 27 H 1.08999 * 109.46879 * 185.50851 * 1 2 3 28 28 H 1.09004 * 109.47101 * 305.49770 * 1 2 3 29 29 H 1.08995 * 109.47569 * 65.50127 * 1 2 3 30 30 H 1.09002 * 109.46800 * 240.00502 * 2 1 3 31 31 H 1.08994 * 109.47262 * 120.00298 * 2 1 3 32 32 H 1.09003 * 109.47471 * 60.00258 * 9 8 6 33 33 H 1.09006 * 109.46932 * 179.97438 * 9 8 6 34 34 H 1.08992 * 109.47351 * 299.99757 * 9 8 6 35 35 H 1.08008 * 126.64604 * 180.26007 * 10 5 4 36 36 H 0.97008 * 119.99931 * 244.01196 * 15 12 11 37 37 H 1.09006 * 109.46810 * 283.88425 * 16 15 12 38 38 H 1.09000 * 109.47190 * 43.88337 * 16 15 12 39 39 H 1.09000 * 109.46656 * 300.00002 * 17 16 15 40 40 H 1.09000 * 109.47392 * 59.99602 * 17 16 15 41 41 H 1.09000 * 109.47501 * 299.99726 * 18 17 16 42 42 H 1.09007 * 109.47253 * 59.99990 * 18 17 16 43 43 H 0.97003 * 119.99915 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.1907 2.1919 -1.0833 5 6 2.6571 3.4012 -0.7080 6 6 2.9587 4.5225 -1.6008 7 8 3.3759 5.5692 -1.1428 8 8 2.7737 4.3944 -2.9308 9 6 3.0938 5.5462 -3.7548 10 6 2.7987 3.3960 0.6510 11 6 2.3970 2.1266 1.0936 12 16 2.3717 1.5595 2.7616 13 8 2.8649 2.6290 3.5567 14 8 1.0973 0.9643 2.9638 15 7 3.4828 0.3373 2.8807 16 6 4.9047 0.6164 2.6653 17 6 5.7406 -0.5420 3.2133 18 6 7.2255 -0.2507 2.9878 19 6 8.0489 -1.3914 3.5281 20 1 7.5618 -2.2395 3.9861 21 6 9.4242 -1.3528 3.4367 22 7 10.0174 -0.3203 2.8785 23 14 10.4446 -2.7671 4.1057 24 1 9.5443 -3.7989 4.6803 25 1 11.2444 -3.3641 3.0061 26 1 11.3567 -2.2624 5.1634 27 1 -0.3633 -1.0229 0.0986 28 1 -0.3633 0.5968 0.8367 29 1 -0.3634 0.4261 -0.9351 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 4.1459 5.8020 -3.6288 33 1 2.9007 5.3094 -4.8012 34 1 2.4757 6.3918 -3.4533 35 1 3.1476 4.2125 1.2659 36 1 3.1921 -0.5635 3.0931 37 1 5.0952 0.7289 1.5980 38 1 5.1766 1.5369 3.1819 39 1 5.5500 -0.6544 4.2806 40 1 5.4687 -1.4625 2.6967 41 1 7.4158 -0.1385 1.9204 42 1 7.4978 0.6699 3.5041 43 1 10.9849 -0.2929 2.8145 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180684017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:24 Heat of formation + Delta-G solvation = -185.597924 kcal Electronic energy + Delta-G solvation = -28133.138003 eV Core-core repulsion = 23885.039583 eV Total energy + Delta-G solvation = -4248.098420 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.117 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.26070 -41.47495 -38.44737 -37.84092 -37.43566 -37.04760 -35.61247 -35.14198 -34.45921 -32.63977 -30.99019 -28.65124 -28.21277 -25.77293 -24.78018 -24.40005 -23.00348 -22.37272 -22.09132 -20.56849 -19.85446 -18.61888 -18.48194 -18.32210 -18.11814 -17.32032 -17.17140 -17.07079 -16.82766 -16.45931 -16.01945 -15.70835 -15.43283 -15.09981 -14.57170 -14.49282 -14.36228 -14.30888 -14.06147 -13.78592 -13.53830 -13.33166 -13.22308 -13.21032 -13.20434 -12.81749 -12.66404 -12.62623 -12.51147 -12.26813 -12.21441 -12.08376 -12.00969 -11.90488 -11.67055 -11.37131 -11.11981 -10.54157 -10.50454 -10.20148 -8.16995 -6.27050 -0.75212 -0.56594 0.26634 0.88281 1.42504 1.43759 1.44135 1.55999 1.63761 1.92489 2.43923 2.58746 2.98544 3.09930 3.17347 3.57449 3.65847 3.99292 4.04178 4.07278 4.10802 4.15051 4.19936 4.27025 4.28545 4.49950 4.58124 4.64687 4.68670 4.72449 4.92064 4.93720 4.94999 5.00603 5.21663 5.25404 5.26312 5.34450 5.57850 5.78796 5.89967 6.08939 6.27863 6.29606 6.91102 7.42265 8.94947 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.010089 B = 0.002869 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.531039 B = 9756.039250 C =11250.303893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.080 4.080 3 C 0.191 3.809 4 O -0.139 6.139 5 C -0.089 4.089 6 C 0.558 3.442 7 O -0.505 6.505 8 O -0.352 6.352 9 C 0.027 3.973 10 C -0.025 4.025 11 C -0.791 4.791 12 S 2.739 3.261 13 O -0.985 6.985 14 O -0.959 6.959 15 N -1.101 6.101 16 C 0.121 3.879 17 C -0.103 4.103 18 C 0.019 3.981 19 C -0.538 4.538 20 H 0.065 0.935 21 C -0.003 4.003 22 N -0.934 5.934 23 Si 0.963 3.037 24 H -0.259 1.259 25 H -0.280 1.280 26 H -0.283 1.283 27 H 0.101 0.899 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.132 0.868 31 H 0.117 0.883 32 H 0.068 0.932 33 H 0.139 0.861 34 H 0.072 0.928 35 H 0.182 0.818 36 H 0.432 0.568 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.075 0.925 41 H -0.001 1.001 42 H -0.008 1.008 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.412 3.331 -12.508 25.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.117 4.117 3 C 0.133 3.867 4 O -0.032 6.032 5 C -0.138 4.138 6 C 0.403 3.597 7 O -0.395 6.395 8 O -0.268 6.268 9 C -0.066 4.066 10 C -0.045 4.045 11 C -0.877 4.877 12 S 2.825 3.175 13 O -0.975 6.975 14 O -0.949 6.949 15 N -0.865 5.865 16 C -0.005 4.005 17 C -0.142 4.142 18 C -0.019 4.019 19 C -0.576 4.576 20 H 0.083 0.917 21 C -0.200 4.200 22 N -0.575 5.575 23 Si 0.788 3.212 24 H -0.183 1.183 25 H -0.206 1.206 26 H -0.209 1.209 27 H 0.119 0.881 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.150 0.850 31 H 0.135 0.865 32 H 0.086 0.914 33 H 0.157 0.843 34 H 0.091 0.909 35 H 0.199 0.801 36 H 0.270 0.730 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.018 0.982 42 H 0.011 0.989 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.661 4.208 -12.215 25.221 hybrid contribution 1.353 -0.127 -0.233 1.379 sum -20.308 4.082 -12.448 24.167 Atomic orbital electron populations 1.21885 0.90868 1.05311 1.03203 1.21080 0.99084 0.83410 1.08102 1.23532 0.87249 0.94125 0.81824 1.84108 1.63008 1.21045 1.35020 1.20789 1.14278 0.85846 0.92891 1.19039 0.74363 0.84353 0.81901 1.90968 1.43358 1.27791 1.77409 1.86643 1.78467 1.44544 1.17155 1.23764 1.02163 0.85829 0.94799 1.21742 0.93682 0.96498 0.92553 1.31951 1.25360 1.05000 1.25370 1.00453 0.72273 0.72532 0.72210 1.93558 1.81223 1.56418 1.66292 1.93583 1.39104 1.77165 1.85097 1.55222 1.17856 1.26074 1.87347 1.21347 0.78348 0.99768 1.01009 1.21615 0.94455 0.97163 1.00959 1.19013 0.91759 0.95576 0.95538 1.21737 0.92010 1.05549 1.38293 0.91718 1.25965 0.99700 0.98625 0.95730 1.70104 1.09889 1.31684 1.45784 0.85434 0.78543 0.79282 0.77980 1.18328 1.20565 1.20879 0.88060 0.92118 0.91215 0.84977 0.86527 0.91359 0.84258 0.90928 0.80083 0.73033 0.91050 0.91513 0.91980 0.90675 0.98240 0.98946 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.90 71.98 0.71 -1.12 16 2 C -0.08 -1.04 6.04 29.85 0.18 -0.86 16 3 C 0.19 3.87 6.57 24.98 0.16 4.03 16 4 O -0.14 -3.14 10.67 -4.88 -0.05 -3.20 16 5 C -0.09 -2.26 7.18 24.04 0.17 -2.08 16 6 C 0.56 14.12 7.93 69.97 0.55 14.68 16 7 O -0.50 -14.67 16.66 19.42 0.32 -14.35 16 8 O -0.35 -7.32 10.58 -56.71 -0.60 -7.92 16 9 C 0.03 0.34 10.57 113.37 1.20 1.54 16 10 C -0.02 -0.64 10.32 22.40 0.23 -0.41 16 11 C -0.79 -18.92 6.14 22.07 0.14 -18.78 16 12 S 2.74 68.85 5.19 -56.49 -0.29 68.56 16 13 O -0.98 -32.32 17.28 -128.00 -2.21 -34.53 16 14 O -0.96 -24.41 17.06 -128.00 -2.18 -26.60 16 15 N -1.10 -25.01 5.73 -187.48 -1.07 -26.09 16 16 C 0.12 3.58 6.22 86.38 0.54 4.12 16 17 C -0.10 -3.66 5.30 30.59 0.16 -3.50 16 18 C 0.02 0.95 4.97 29.85 0.15 1.09 16 19 C -0.54 -29.21 9.11 25.60 0.23 -28.97 16 20 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 21 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 22 N -0.93 -55.91 13.29 21.45 0.28 -55.62 16 23 Si 0.96 43.21 29.54 68.60 2.03 45.24 16 24 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 25 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 26 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 27 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.94 7.66 -2.38 -0.02 0.92 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.12 1.29 7.16 -2.39 -0.02 1.28 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.14 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.18 4.58 8.06 -2.91 -0.02 4.55 16 36 H 0.43 7.37 8.66 -96.73 -0.84 6.54 16 37 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.07 2.16 7.75 -2.39 -0.02 2.14 16 39 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 40 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 42 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 43 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -75.72 387.91 1.31 -74.41 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 0.20 Total: 10.04 kcal Atomic # 6 Polarization: -34.83 SS G_CDS: 4.89 Total: -29.94 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -0.79 Total: -81.71 kcal Atomic # 8 Polarization: -81.87 SS G_CDS: -4.72 Total: -86.60 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 68.85 SS G_CDS: -0.29 Total: 68.56 kcal Total: -75.72 1.31 -74.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180684017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.190 kcal (2) G-P(sol) polarization free energy of solvation -75.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds