Wall clock time and date at job start Wed Apr 1 2020 02:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50695 * 109.47320 * 2 1 4 4 O 1.33905 * 125.61221 * 276.49752 * 3 2 1 5 5 C 1.34940 * 109.38425 * 180.23644 * 4 3 2 6 6 C 1.46467 * 125.99715 * 179.74772 * 5 4 3 7 7 O 1.21621 * 119.99646 * 180.02562 * 6 5 4 8 8 O 1.34896 * 120.00186 * 0.02723 * 6 5 4 9 9 C 1.45195 * 116.99948 * 180.02562 * 8 6 5 10 10 C 1.36641 * 108.00378 * 359.77011 * 5 4 3 11 11 C 1.35172 * 125.60646 * 96.33042 * 3 2 1 12 12 S 1.76201 * 126.43766 * 0.03867 * 11 3 2 13 13 O 1.42098 * 106.40106 * 178.28482 * 12 11 3 14 14 O 1.42095 * 106.40372 * 45.35718 * 12 11 3 15 15 N 1.65604 * 107.21419 * 291.81774 * 12 11 3 16 16 C 1.46497 * 120.00580 * 294.24827 * 15 12 11 17 17 H 1.09008 * 109.46490 * 7.24669 * 16 15 12 18 18 C 1.50692 * 109.47458 * 127.24508 * 16 15 12 19 19 H 1.08002 * 119.99879 * 1.77036 * 18 16 15 20 20 C 1.37873 * 120.00311 * 181.77281 * 18 16 15 21 21 N 1.31512 * 120.00527 * 196.55650 * 20 18 16 22 22 Si 1.86802 * 119.99929 * 16.55828 * 20 18 16 23 23 H 1.48497 * 109.47382 * 86.91081 * 22 20 18 24 24 H 1.48506 * 109.47125 * 206.91315 * 22 20 18 25 25 H 1.48502 * 109.46940 * 326.90936 * 22 20 18 26 26 C 1.53004 * 109.47151 * 247.25012 * 16 15 12 27 27 C 1.52992 * 109.47160 * 65.55395 * 26 16 15 28 28 H 1.08997 * 109.47504 * 305.10556 * 1 2 3 29 29 H 1.09004 * 109.46947 * 65.10639 * 1 2 3 30 30 H 1.09003 * 109.47474 * 185.10234 * 1 2 3 31 31 H 1.09002 * 109.47510 * 239.99542 * 2 1 3 32 32 H 1.09001 * 109.46872 * 120.00063 * 2 1 3 33 33 H 1.09003 * 109.47333 * 299.99720 * 9 8 6 34 34 H 1.08997 * 109.47235 * 59.99861 * 9 8 6 35 35 H 1.09001 * 109.47283 * 179.97438 * 9 8 6 36 36 H 1.07998 * 126.64700 * 180.02562 * 10 5 4 37 37 H 0.97008 * 119.99475 * 114.25121 * 15 12 11 38 38 H 0.97000 * 120.00585 * 179.97438 * 21 20 18 39 39 H 1.09001 * 109.47027 * 185.55564 * 26 16 15 40 40 H 1.09000 * 109.46418 * 305.55098 * 26 16 15 41 41 H 1.09000 * 109.47745 * 298.68944 * 27 26 16 42 42 H 1.08999 * 109.47144 * 58.69561 * 27 26 16 43 43 H 1.09007 * 109.47119 * 178.69341 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 2.1761 2.1969 -1.0816 5 6 2.6532 3.4025 -0.7075 6 6 2.9499 4.5255 -1.5998 7 8 3.3788 5.5680 -1.1432 8 8 2.7475 4.4035 -2.9279 9 6 3.0638 5.5567 -3.7515 10 6 2.8113 3.3915 0.6496 11 6 2.4089 2.1223 1.0923 12 16 2.4030 1.5483 2.7582 13 8 2.9151 2.6108 3.5505 14 8 2.9765 0.2484 2.7367 15 7 0.8200 1.3537 3.2039 16 6 -0.0612 2.5197 3.3054 17 1 0.4584 3.4014 2.9301 18 6 -1.3042 2.2828 2.4872 19 1 -1.4388 1.3450 1.9687 20 6 -2.2696 3.2633 2.4003 21 7 -3.4770 2.9616 1.9752 22 14 -1.8627 5.0204 2.8865 23 1 -1.2899 5.7371 1.7188 24 1 -3.1001 5.7099 3.3322 25 1 -0.8746 5.0111 3.9950 26 6 -0.4484 2.7403 4.7691 27 6 0.7965 3.1174 5.5747 28 1 -0.3634 0.5910 0.8407 29 1 -0.3633 0.4326 -0.9322 30 1 -0.3634 -1.0236 0.0914 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 2.4543 6.4046 -3.4390 34 1 4.1188 5.8060 -3.6377 35 1 2.8562 5.3250 -4.7962 36 1 3.1751 4.2027 1.2628 37 1 0.4761 0.4676 3.3977 38 1 -4.1563 3.6513 1.9144 39 1 -1.1806 3.5452 4.8339 40 1 -0.8789 1.8241 5.1730 41 1 1.5193 2.3028 5.5292 42 1 1.2402 4.0207 5.1562 43 1 0.5168 3.2972 6.6128 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186424351.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:45 Heat of formation + Delta-G solvation = -147.155926 kcal Electronic energy + Delta-G solvation = -30082.210756 eV Core-core repulsion = 25835.779306 eV Total energy + Delta-G solvation = -4246.431450 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.117 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.91098 -40.30849 -37.00220 -36.68705 -36.25433 -35.49495 -34.33841 -33.13854 -32.34164 -30.97927 -29.78889 -27.71952 -27.26398 -24.58643 -23.07317 -22.72413 -21.78969 -20.96289 -20.48840 -19.30178 -18.58127 -17.48016 -17.19684 -16.95679 -16.45932 -15.96898 -15.85713 -15.63821 -15.62057 -14.81688 -14.29382 -14.04617 -13.89837 -13.49349 -13.47397 -13.25311 -13.15533 -12.85892 -12.41779 -12.35306 -12.31475 -12.01195 -11.82469 -11.76927 -11.55028 -11.38170 -11.34842 -11.03359 -11.01507 -10.93002 -10.86303 -10.82280 -10.69528 -10.48187 -9.96246 -9.73162 -9.42048 -8.85922 -8.62586 -8.48676 -6.29123 -4.26333 0.73047 0.82725 1.65816 2.09696 2.72841 2.80942 3.19733 3.28423 3.35076 3.51005 4.08042 4.27343 4.29025 4.39421 4.84537 4.89305 4.98295 4.98755 5.01119 5.14443 5.21879 5.32207 5.37135 5.44617 5.76893 5.92874 5.97175 5.97974 6.00735 6.02281 6.05297 6.14012 6.30079 6.55594 6.55848 6.63867 6.74047 6.84441 7.13181 7.25099 7.37944 7.47508 7.78945 8.29360 8.76989 9.35097 10.82056 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.009462 B = 0.005358 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.414823 B = 5224.809213 C = 6140.824542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.080 4.080 3 C 0.187 3.813 4 O -0.141 6.141 5 C -0.085 4.085 6 C 0.559 3.441 7 O -0.486 6.486 8 O -0.349 6.349 9 C 0.036 3.964 10 C -0.010 4.010 11 C -0.772 4.772 12 S 2.715 3.285 13 O -0.954 6.954 14 O -0.974 6.974 15 N -1.090 6.090 16 C 0.256 3.744 17 H 0.037 0.963 18 C -0.542 4.542 19 H 0.089 0.911 20 C 0.087 3.913 21 N -0.880 5.880 22 Si 0.842 3.158 23 H -0.277 1.277 24 H -0.284 1.284 25 H -0.242 1.242 26 C -0.135 4.135 27 C -0.152 4.152 28 H 0.101 0.899 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.178 0.822 37 H 0.414 0.586 38 H 0.266 0.734 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.052 0.948 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.003 -2.177 -6.421 12.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.117 4.117 3 C 0.129 3.871 4 O -0.035 6.035 5 C -0.134 4.134 6 C 0.404 3.596 7 O -0.375 6.375 8 O -0.265 6.265 9 C -0.057 4.057 10 C -0.030 4.030 11 C -0.856 4.856 12 S 2.800 3.200 13 O -0.944 6.944 14 O -0.964 6.964 15 N -0.851 5.851 16 C 0.151 3.849 17 H 0.055 0.945 18 C -0.580 4.580 19 H 0.107 0.893 20 C -0.118 4.118 21 N -0.516 5.516 22 Si 0.668 3.332 23 H -0.203 1.203 24 H -0.210 1.210 25 H -0.166 1.166 26 C -0.174 4.174 27 C -0.210 4.210 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.137 0.863 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.123 0.877 36 H 0.196 0.804 37 H 0.249 0.751 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.688 -1.763 -6.279 12.521 hybrid contribution -0.422 1.288 -0.562 1.467 sum 10.266 -0.476 -6.841 12.345 Atomic orbital electron populations 1.22135 0.90891 1.04097 1.05701 1.20917 0.98948 0.85308 1.06554 1.22882 0.88375 0.93229 0.82572 1.84067 1.63060 1.21200 1.35138 1.20605 1.14058 0.85798 0.92933 1.19041 0.74712 0.84792 0.81080 1.90955 1.42469 1.27263 1.76821 1.86661 1.78746 1.42777 1.18305 1.23358 1.01713 0.86797 0.93850 1.21531 0.93752 0.95726 0.92019 1.32089 1.23367 1.04760 1.25381 1.01221 0.73031 0.73199 0.72598 1.93576 1.78226 1.57331 1.65317 1.93531 1.76653 1.39100 1.87147 1.55282 1.29363 1.17138 1.83337 1.18838 0.90141 0.82482 0.93476 0.94507 1.21199 1.01340 1.04006 1.31443 0.89325 1.24798 0.94231 0.98516 0.94305 1.69946 1.01975 1.33651 1.46037 0.87577 0.79275 0.85972 0.80355 1.20262 1.20994 1.16602 1.22307 0.96896 1.01447 0.96797 1.21872 0.98673 1.01625 0.98792 0.88010 0.91945 0.90776 0.88410 0.86287 0.91425 0.91572 0.87690 0.80445 0.75115 0.92378 0.91437 0.91991 0.93268 0.92847 0.94258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 9.89 37.16 0.37 -2.01 16 2 C -0.08 -1.04 6.32 -27.89 -0.18 -1.22 16 3 C 0.19 2.99 6.57 -35.40 -0.23 2.75 16 4 O -0.14 -2.33 10.67 4.75 0.05 -2.28 16 5 C -0.08 -1.43 7.18 -36.85 -0.26 -1.70 16 6 C 0.56 8.96 7.93 34.04 0.27 9.23 16 7 O -0.49 -8.38 16.66 -19.36 -0.32 -8.70 16 8 O -0.35 -4.83 10.58 -42.47 -0.45 -5.28 16 9 C 0.04 0.34 10.57 101.05 1.07 1.41 16 10 C -0.01 -0.17 10.32 -39.38 -0.41 -0.58 16 11 C -0.77 -13.25 6.17 -39.89 -0.25 -13.50 16 12 S 2.71 47.13 5.41 -107.50 -0.58 46.55 16 13 O -0.95 -18.43 15.60 -57.17 -0.89 -19.32 16 14 O -0.97 -17.06 16.31 -57.17 -0.93 -18.00 16 15 N -1.09 -18.98 4.87 -5.88 -0.03 -19.01 16 16 C 0.26 5.32 1.81 -69.09 -0.12 5.20 16 17 H 0.04 0.81 6.67 -51.92 -0.35 0.46 16 18 C -0.54 -12.92 8.94 -34.45 -0.31 -13.23 16 19 H 0.09 2.17 5.78 -52.49 -0.30 1.86 16 20 C 0.09 2.23 5.31 -17.82 -0.09 2.14 16 21 N -0.88 -24.28 13.96 55.43 0.77 -23.51 16 22 Si 0.84 19.59 25.81 -169.99 -4.39 15.20 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.24 -5.27 5.39 56.52 0.30 -4.97 16 26 C -0.13 -2.68 4.87 -26.73 -0.13 -2.81 16 27 C -0.15 -2.78 8.90 37.15 0.33 -2.45 16 28 H 0.10 1.70 5.38 -51.93 -0.28 1.42 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.12 1.49 6.16 -51.93 -0.32 1.17 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.18 2.83 8.06 -52.49 -0.42 2.41 16 37 H 0.41 6.24 8.96 -34.47 -0.31 5.93 16 38 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.07 1.42 4.57 -51.93 -0.24 1.18 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.05 0.86 6.90 -51.93 -0.36 0.50 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 368.31 15.07 5.55 5.55 Total: -1.00 -30.98 368.31 -6.78 -37.76 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -5.61 Total: 7.78 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 0.05 Total: -16.76 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.74 Total: -42.52 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: -2.55 Total: -53.57 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.39 Total: 15.20 kcal Atomic # 16 Polarization: 47.13 SS G_CDS: -0.58 Total: 46.55 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.98 -6.78 -37.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186424351.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.393 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds