Wall clock time and date at job start Wed Apr 1 2020 02:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50695 * 109.47320 * 2 1 4 4 O 1.33905 * 125.61221 * 276.49752 * 3 2 1 5 5 C 1.34940 * 109.38425 * 180.23644 * 4 3 2 6 6 C 1.46467 * 125.99715 * 179.74772 * 5 4 3 7 7 O 1.21621 * 119.99646 * 180.02562 * 6 5 4 8 8 O 1.34896 * 120.00186 * 0.02723 * 6 5 4 9 9 C 1.45195 * 116.99948 * 180.02562 * 8 6 5 10 10 C 1.36641 * 108.00378 * 359.77011 * 5 4 3 11 11 C 1.35172 * 125.60646 * 96.33042 * 3 2 1 12 12 S 1.76201 * 126.43766 * 0.03867 * 11 3 2 13 13 O 1.42098 * 106.40106 * 178.28482 * 12 11 3 14 14 O 1.42095 * 106.40372 * 45.35718 * 12 11 3 15 15 N 1.65604 * 107.21419 * 291.81774 * 12 11 3 16 16 C 1.46497 * 120.00580 * 294.24827 * 15 12 11 17 17 H 1.09008 * 109.46490 * 7.24669 * 16 15 12 18 18 C 1.50692 * 109.47458 * 127.24508 * 16 15 12 19 19 H 1.08002 * 119.99879 * 1.77036 * 18 16 15 20 20 C 1.37873 * 120.00311 * 181.77281 * 18 16 15 21 21 N 1.31512 * 120.00527 * 196.55650 * 20 18 16 22 22 Si 1.86802 * 119.99929 * 16.55828 * 20 18 16 23 23 H 1.48497 * 109.47382 * 86.91081 * 22 20 18 24 24 H 1.48506 * 109.47125 * 206.91315 * 22 20 18 25 25 H 1.48502 * 109.46940 * 326.90936 * 22 20 18 26 26 C 1.53004 * 109.47151 * 247.25012 * 16 15 12 27 27 C 1.52992 * 109.47160 * 65.55395 * 26 16 15 28 28 H 1.08997 * 109.47504 * 305.10556 * 1 2 3 29 29 H 1.09004 * 109.46947 * 65.10639 * 1 2 3 30 30 H 1.09003 * 109.47474 * 185.10234 * 1 2 3 31 31 H 1.09002 * 109.47510 * 239.99542 * 2 1 3 32 32 H 1.09001 * 109.46872 * 120.00063 * 2 1 3 33 33 H 1.09003 * 109.47333 * 299.99720 * 9 8 6 34 34 H 1.08997 * 109.47235 * 59.99861 * 9 8 6 35 35 H 1.09001 * 109.47283 * 179.97438 * 9 8 6 36 36 H 1.07998 * 126.64700 * 180.02562 * 10 5 4 37 37 H 0.97008 * 119.99475 * 114.25121 * 15 12 11 38 38 H 0.97000 * 120.00585 * 179.97438 * 21 20 18 39 39 H 1.09001 * 109.47027 * 185.55564 * 26 16 15 40 40 H 1.09000 * 109.46418 * 305.55098 * 26 16 15 41 41 H 1.09000 * 109.47745 * 298.68944 * 27 26 16 42 42 H 1.08999 * 109.47144 * 58.69561 * 27 26 16 43 43 H 1.09007 * 109.47119 * 178.69341 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 2.1761 2.1969 -1.0816 5 6 2.6532 3.4025 -0.7075 6 6 2.9499 4.5255 -1.5998 7 8 3.3788 5.5680 -1.1432 8 8 2.7475 4.4035 -2.9279 9 6 3.0638 5.5567 -3.7515 10 6 2.8113 3.3915 0.6496 11 6 2.4089 2.1223 1.0923 12 16 2.4030 1.5483 2.7582 13 8 2.9151 2.6108 3.5505 14 8 2.9765 0.2484 2.7367 15 7 0.8200 1.3537 3.2039 16 6 -0.0612 2.5197 3.3054 17 1 0.4584 3.4014 2.9301 18 6 -1.3042 2.2828 2.4872 19 1 -1.4388 1.3450 1.9687 20 6 -2.2696 3.2633 2.4003 21 7 -3.4770 2.9616 1.9752 22 14 -1.8627 5.0204 2.8865 23 1 -1.2899 5.7371 1.7188 24 1 -3.1001 5.7099 3.3322 25 1 -0.8746 5.0111 3.9950 26 6 -0.4484 2.7403 4.7691 27 6 0.7965 3.1174 5.5747 28 1 -0.3634 0.5910 0.8407 29 1 -0.3633 0.4326 -0.9322 30 1 -0.3634 -1.0236 0.0914 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 2.4543 6.4046 -3.4390 34 1 4.1188 5.8060 -3.6377 35 1 2.8562 5.3250 -4.7962 36 1 3.1751 4.2027 1.2628 37 1 0.4761 0.4676 3.3977 38 1 -4.1563 3.6513 1.9144 39 1 -1.1806 3.5452 4.8339 40 1 -0.8789 1.8241 5.1730 41 1 1.5193 2.3028 5.5292 42 1 1.2402 4.0207 5.1562 43 1 0.5168 3.2972 6.6128 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186424351.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:44 Heat of formation + Delta-G solvation = -168.783948 kcal Electronic energy + Delta-G solvation = -30083.148618 eV Core-core repulsion = 25835.779306 eV Total energy + Delta-G solvation = -4247.369312 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.117 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.18516 -41.47542 -38.46888 -37.85316 -37.81782 -36.94581 -35.51374 -34.40517 -34.24575 -32.47885 -30.95659 -29.03332 -28.63513 -25.72197 -24.48755 -24.29468 -22.96417 -22.27910 -22.06335 -20.60822 -19.96964 -19.05930 -18.34685 -18.27865 -17.95309 -17.39858 -17.15708 -16.97995 -16.92172 -16.35065 -15.63003 -15.36581 -15.17649 -15.00418 -14.65078 -14.52643 -14.48133 -14.30450 -14.02224 -13.67923 -13.51401 -13.31013 -13.23119 -13.17086 -13.08983 -12.82045 -12.64307 -12.53457 -12.47826 -12.26041 -12.19477 -12.04298 -12.01826 -11.82210 -11.62346 -11.43485 -11.12630 -10.54788 -10.18332 -10.06992 -8.27801 -6.24128 -0.58538 -0.52066 0.35679 0.92371 1.32066 1.41796 1.45900 1.46362 1.67113 2.08703 2.35546 2.69520 3.06681 3.07841 3.15808 3.65120 3.70470 4.07136 4.11370 4.15475 4.18922 4.21840 4.25455 4.33270 4.44115 4.54145 4.60622 4.64944 4.75779 4.79518 4.91923 4.96180 4.97195 5.02185 5.24220 5.29169 5.31673 5.46090 5.52541 5.61186 5.68714 6.29628 6.36130 6.37486 6.84789 7.38978 8.85852 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.009462 B = 0.005358 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.414823 B = 5224.809213 C = 6140.824542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.080 4.080 3 C 0.191 3.809 4 O -0.142 6.142 5 C -0.096 4.096 6 C 0.560 3.440 7 O -0.504 6.504 8 O -0.353 6.353 9 C 0.026 3.974 10 C -0.024 4.024 11 C -0.790 4.790 12 S 2.732 3.268 13 O -0.973 6.973 14 O -0.973 6.973 15 N -1.084 6.084 16 C 0.259 3.741 17 H 0.030 0.970 18 C -0.524 4.524 19 H 0.080 0.920 20 C 0.042 3.958 21 N -0.924 5.924 22 Si 0.876 3.124 23 H -0.288 1.288 24 H -0.288 1.288 25 H -0.219 1.219 26 C -0.137 4.137 27 C -0.150 4.150 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.133 0.867 32 H 0.126 0.874 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.140 0.860 36 H 0.183 0.817 37 H 0.425 0.575 38 H 0.264 0.736 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.042 0.958 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.121 -2.936 -6.590 13.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.117 4.117 3 C 0.133 3.867 4 O -0.035 6.035 5 C -0.145 4.145 6 C 0.406 3.594 7 O -0.395 6.395 8 O -0.269 6.269 9 C -0.066 4.066 10 C -0.045 4.045 11 C -0.876 4.876 12 S 2.817 3.183 13 O -0.963 6.963 14 O -0.963 6.963 15 N -0.846 5.846 16 C 0.152 3.848 17 H 0.048 0.952 18 C -0.563 4.563 19 H 0.098 0.902 20 C -0.159 4.159 21 N -0.562 5.562 22 Si 0.702 3.298 23 H -0.214 1.214 24 H -0.214 1.214 25 H -0.142 1.142 26 C -0.176 4.176 27 C -0.208 4.208 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.151 0.849 32 H 0.144 0.856 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.158 0.842 36 H 0.200 0.800 37 H 0.262 0.738 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.827 -2.539 -6.434 13.701 hybrid contribution -0.722 1.451 -0.617 1.734 sum 11.105 -1.088 -7.050 13.199 Atomic orbital electron populations 1.22086 0.91488 1.05093 1.03976 1.21135 0.98158 0.83744 1.08649 1.23490 0.87060 0.94130 0.82063 1.84075 1.63012 1.21130 1.35332 1.20834 1.14169 0.86283 0.93216 1.18985 0.74371 0.84221 0.81835 1.90935 1.43471 1.27803 1.77321 1.86650 1.78305 1.44647 1.17314 1.23774 1.02385 0.85666 0.94760 1.21729 0.94098 0.96112 0.92515 1.32069 1.24769 1.05202 1.25531 1.00637 0.72545 0.72749 0.72324 1.93550 1.78550 1.57993 1.66200 1.93528 1.76494 1.39020 1.87251 1.55084 1.29035 1.16930 1.83542 1.18642 0.89168 0.83287 0.93715 0.95243 1.21522 1.01644 1.03107 1.30039 0.90231 1.25328 0.94305 1.01116 0.95101 1.70035 1.02966 1.34328 1.48912 0.87022 0.79395 0.83012 0.80413 1.21441 1.21362 1.14159 1.22260 0.97534 1.01640 0.96200 1.21846 0.97762 1.01333 0.99812 0.91036 0.92533 0.88171 0.84927 0.85566 0.91486 0.90668 0.84216 0.79973 0.73813 0.92705 0.92596 0.90965 0.92698 0.93835 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.43 9.89 71.98 0.71 -3.72 16 2 C -0.08 -1.89 6.32 29.84 0.19 -1.71 16 3 C 0.19 5.83 6.57 24.98 0.16 6.00 16 4 O -0.14 -4.55 10.67 -4.84 -0.05 -4.61 16 5 C -0.10 -3.22 7.18 24.04 0.17 -3.04 16 6 C 0.56 17.77 7.93 69.97 0.55 18.32 16 7 O -0.50 -17.31 16.66 19.44 0.32 -16.98 16 8 O -0.35 -9.40 10.58 -56.73 -0.60 -10.00 16 9 C 0.03 0.45 10.57 113.37 1.20 1.65 16 10 C -0.02 -0.84 10.32 22.40 0.23 -0.61 16 11 C -0.79 -26.49 6.17 22.07 0.14 -26.36 16 12 S 2.73 91.20 5.41 -56.49 -0.31 90.90 16 13 O -0.97 -36.44 15.60 -128.00 -2.00 -38.44 16 14 O -0.97 -32.16 16.31 -128.00 -2.09 -34.24 16 15 N -1.08 -36.25 4.87 -172.52 -0.84 -37.09 16 16 C 0.26 10.47 1.81 44.24 0.08 10.55 16 17 H 0.03 1.27 6.67 -2.38 -0.02 1.25 16 18 C -0.52 -24.89 8.94 25.60 0.23 -24.66 16 19 H 0.08 3.89 5.78 -2.91 -0.02 3.88 16 20 C 0.04 2.18 5.31 84.65 0.45 2.63 16 21 N -0.92 -51.80 13.96 21.45 0.30 -51.50 16 22 Si 0.88 40.18 25.81 68.60 1.77 41.95 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 24 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 25 H -0.22 -9.14 5.39 99.48 0.54 -8.60 16 26 C -0.14 -5.20 4.87 30.59 0.15 -5.05 16 27 C -0.15 -5.13 8.90 71.98 0.64 -4.49 16 28 H 0.07 2.34 5.38 -2.39 -0.01 2.32 16 29 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.13 2.82 6.16 -2.39 -0.01 2.81 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 35 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.18 5.86 8.06 -2.91 -0.02 5.84 16 37 H 0.43 12.12 8.96 -96.74 -0.87 11.26 16 38 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 39 H 0.06 2.26 4.57 -2.39 -0.01 2.24 16 40 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.05 1.79 6.90 -2.39 -0.02 1.78 16 42 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -65.84 368.31 1.44 -64.40 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.03 Total: 26.11 kcal Atomic # 6 Polarization: -35.39 SS G_CDS: 4.90 Total: -30.49 kcal Atomic # 7 Polarization: -88.05 SS G_CDS: -0.54 Total: -88.59 kcal Atomic # 8 Polarization: -99.86 SS G_CDS: -4.41 Total: -104.27 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 1.77 Total: 41.95 kcal Atomic # 16 Polarization: 91.20 SS G_CDS: -0.31 Total: 90.90 kcal Total: -65.84 1.44 -64.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186424351.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.389 kcal (2) G-P(sol) polarization free energy of solvation -65.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds