Wall clock time and date at job start Wed Apr 1 2020 03:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46919 * 2 1 4 4 H 1.08995 * 109.47298 * 55.00107 * 3 2 1 5 5 C 1.50700 * 109.47142 * 174.99987 * 3 2 1 6 6 H 1.07994 * 120.00164 * 119.99678 * 5 3 2 7 7 C 1.37881 * 119.99902 * 299.99899 * 5 3 2 8 8 N 1.31519 * 119.99865 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00078 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46929 * 90.00072 * 9 7 5 11 11 H 1.48497 * 109.46845 * 210.00367 * 9 7 5 12 12 H 1.48493 * 109.47094 * 330.00060 * 9 7 5 13 13 O 1.45200 * 109.47349 * 294.99723 * 3 2 1 14 14 C 1.34900 * 116.99615 * 90.00074 * 13 3 2 15 15 O 1.21614 * 120.00234 * 0.02562 * 14 13 3 16 16 C 1.46473 * 119.99586 * 180.02562 * 14 13 3 17 17 C 1.36641 * 125.99658 * 180.02562 * 16 14 13 18 18 C 1.40304 * 106.70660 * 179.97438 * 17 16 14 19 19 S 1.76202 * 126.43938 * 180.02562 * 18 17 16 20 20 O 1.42095 * 106.40112 * 1.48471 * 19 18 17 21 21 O 1.42098 * 106.39949 * 228.56584 * 19 18 17 22 22 N 1.65597 * 107.21721 * 115.02456 * 19 18 17 23 23 C 1.46506 * 119.99791 * 90.00382 * 22 19 18 24 24 C 1.46499 * 120.00281 * 269.99707 * 22 19 18 25 25 C 1.35175 * 107.12439 * 0.26119 * 18 17 16 26 26 C 1.50701 * 125.60872 * 179.70246 * 25 18 17 27 27 O 1.33913 * 108.77970 * 359.57163 * 25 18 17 28 28 H 1.08998 * 109.47078 * 300.00078 * 1 2 3 29 29 H 1.08994 * 109.47062 * 60.00139 * 1 2 3 30 30 H 1.09009 * 109.46884 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47078 * 239.99922 * 2 1 3 32 32 H 1.09002 * 109.46567 * 120.00235 * 2 1 3 33 33 H 0.97001 * 119.99889 * 179.97438 * 8 7 5 34 34 H 1.08003 * 126.64184 * 359.97438 * 17 16 14 35 35 H 1.09001 * 109.47060 * 180.02562 * 23 22 19 36 36 H 1.09004 * 109.47073 * 299.99532 * 23 22 19 37 37 H 1.09000 * 109.47212 * 59.99615 * 23 22 19 38 38 H 1.08996 * 109.47008 * 270.00769 * 24 22 19 39 39 H 1.08997 * 109.46865 * 30.00455 * 24 22 19 40 40 H 1.08998 * 109.47058 * 149.99968 * 24 22 19 41 41 H 1.08997 * 109.47293 * 90.00087 * 26 25 18 42 42 H 1.08999 * 109.47026 * 210.00444 * 26 25 18 43 43 H 1.09003 * 109.46787 * 330.00119 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4061 0.3375 2.1734 9 14 6.0050 0.8801 1.3812 10 1 6.4428 2.1130 2.0837 11 1 6.4390 -0.3110 2.1546 12 1 6.6132 0.8395 0.0271 13 8 1.6559 2.0916 -1.2407 14 6 0.4668 2.7285 -1.2560 15 8 -0.2293 2.7409 -0.2589 16 6 0.0142 3.4052 -2.4737 17 6 -1.1617 4.0845 -2.6251 18 6 -1.1817 4.5675 -3.9422 19 16 -2.4640 5.5176 -4.6892 20 8 -3.4481 5.7230 -3.6850 21 8 -2.7449 4.9007 -5.9380 22 7 -1.8312 7.0082 -5.0357 23 6 -1.1944 7.2501 -6.3327 24 6 -1.9083 8.0849 -4.0453 25 6 -0.0349 4.1626 -4.5321 26 6 0.3681 4.4488 -5.9558 27 8 0.6855 3.4676 -3.6425 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8292 -0.0609 2.9500 34 1 -1.9274 4.2227 -1.8760 35 1 -0.8406 8.2801 -6.3773 36 1 -0.3508 6.5709 -6.4556 37 1 -1.9177 7.0791 -7.1301 38 1 -2.8320 8.6453 -4.1891 39 1 -1.8948 7.6579 -3.0426 40 1 -1.0554 8.7526 -4.1674 41 1 0.9278 5.3834 -5.9941 42 1 0.9923 3.6360 -6.3271 43 1 -0.5243 4.5341 -6.5758 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188065736.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:19 Heat of formation + Delta-G solvation = -164.617361 kcal Electronic energy + Delta-G solvation = -28870.819782 eV Core-core repulsion = 24623.631147 eV Total energy + Delta-G solvation = -4247.188635 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.117 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.20043 -41.36805 -38.50512 -37.89243 -37.19320 -37.00945 -35.63889 -34.88892 -33.61903 -33.27315 -29.75685 -29.07938 -28.49936 -25.79254 -25.42926 -24.40366 -23.55804 -22.44391 -21.79021 -20.24532 -19.65872 -18.75920 -18.58651 -18.05500 -17.95401 -17.26579 -17.14124 -16.93193 -16.71608 -16.32125 -15.51209 -15.39707 -15.06493 -14.88435 -14.58072 -14.54303 -14.32433 -14.17216 -13.97303 -13.57902 -13.53158 -13.45392 -13.39047 -13.22596 -13.19532 -13.07652 -12.87344 -12.66782 -12.64261 -12.55262 -12.45237 -12.19108 -11.97018 -11.85188 -11.77735 -11.51684 -10.93127 -10.59912 -10.19617 -10.00566 -8.31987 -6.49624 -0.78617 -0.45627 0.31944 1.05999 1.40368 1.42116 1.53770 1.61182 1.87433 1.92888 2.36921 2.55808 2.97024 2.98338 3.20524 3.57883 3.78053 3.85054 4.04166 4.23253 4.29664 4.31510 4.32044 4.37564 4.46813 4.53129 4.62643 4.69775 4.73357 4.77218 4.96358 4.99492 5.00110 5.05874 5.11832 5.12002 5.20730 5.32911 5.43664 5.54484 5.57645 5.79662 5.98963 6.48711 6.71936 7.20640 8.75070 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.020051 B = 0.002687 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.108239 B =10417.287223 C =10898.343274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.130 4.130 3 C 0.224 3.776 4 H 0.015 0.985 5 C -0.554 4.554 6 H 0.065 0.935 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.984 3.016 10 H -0.271 1.271 11 H -0.273 1.273 12 H -0.264 1.264 13 O -0.354 6.354 14 C 0.536 3.464 15 O -0.511 6.511 16 C -0.084 4.084 17 C -0.028 4.028 18 C -0.793 4.793 19 S 2.739 3.261 20 O -0.980 6.980 21 O -0.963 6.963 22 N -0.997 5.997 23 C 0.063 3.937 24 C 0.080 3.920 25 C 0.177 3.823 26 C -0.128 4.128 27 O -0.150 6.150 28 H 0.041 0.959 29 H 0.030 0.970 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.273 0.727 34 H 0.181 0.819 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.104 0.896 41 H 0.146 0.854 42 H 0.120 0.880 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.120 15.561 -20.060 26.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.168 4.168 3 C 0.171 3.829 4 H 0.033 0.967 5 C -0.591 4.591 6 H 0.083 0.917 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.806 3.194 10 H -0.196 1.196 11 H -0.198 1.198 12 H -0.188 1.188 13 O -0.270 6.270 14 C 0.381 3.619 15 O -0.403 6.403 16 C -0.133 4.133 17 C -0.048 4.048 18 C -0.877 4.877 19 S 2.824 3.176 20 O -0.970 6.970 21 O -0.953 6.953 22 N -0.839 5.839 23 C -0.081 4.081 24 C -0.064 4.064 25 C 0.119 3.881 26 C -0.183 4.183 27 O -0.043 6.043 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.198 0.802 35 H 0.130 0.870 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.122 0.878 41 H 0.163 0.837 42 H 0.139 0.861 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.767 14.995 -19.726 25.967 hybrid contribution 1.188 -0.499 1.333 1.854 sum -6.579 14.496 -18.393 24.325 Atomic orbital electron populations 1.21753 0.96317 1.00969 1.00042 1.21898 0.94446 0.97816 1.02659 1.20600 0.95016 0.89459 0.77831 0.96694 1.21277 0.90095 1.40579 1.07182 0.91698 1.25809 1.04434 0.93625 0.94167 1.69999 1.37571 1.37565 1.09794 0.85171 0.77335 0.78157 0.78687 1.19634 1.19826 1.18823 1.86638 1.34198 1.62655 1.43501 1.19481 0.80691 0.76220 0.85468 1.90881 1.56082 1.59685 1.33689 1.20886 0.95714 1.11183 0.85526 1.21657 0.95194 0.92336 0.95609 1.32160 1.20952 1.28610 1.05961 1.00704 0.72262 0.72291 0.72314 1.93540 1.56333 1.85587 1.61548 1.93544 1.82961 1.76455 1.42335 1.57159 1.76355 1.25600 1.24805 1.22221 0.98426 1.05799 0.81638 1.21830 1.04490 0.89918 0.90194 1.23721 0.86730 0.84547 0.93096 1.21686 1.06995 1.07512 0.82086 1.84157 1.43643 1.57318 1.19212 0.93986 0.95076 0.91581 0.93555 0.88903 0.91806 0.80212 0.86951 0.90319 0.90751 0.91119 0.91862 0.87760 0.83653 0.86127 0.85418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.03 8.56 71.98 0.62 -5.42 16 2 C -0.13 -6.68 5.49 30.59 0.17 -6.52 16 3 C 0.22 12.44 2.25 29.85 0.07 12.51 16 4 H 0.02 0.94 7.16 -2.39 -0.02 0.92 16 5 C -0.55 -31.76 8.90 25.60 0.23 -31.53 16 6 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 7 C 0.02 1.09 5.29 84.65 0.45 1.54 16 8 N -0.91 -51.86 11.30 21.45 0.24 -51.62 16 9 Si 0.98 42.65 29.54 68.60 2.03 44.68 16 10 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 11 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 12 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 13 O -0.35 -18.10 9.82 -56.77 -0.56 -18.65 16 14 C 0.54 24.65 6.38 69.97 0.45 25.10 16 15 O -0.51 -25.14 14.06 19.46 0.27 -24.86 16 16 C -0.08 -3.12 7.18 24.04 0.17 -2.95 16 17 C -0.03 -0.88 10.32 22.40 0.23 -0.65 16 18 C -0.79 -19.71 6.18 22.07 0.14 -19.57 16 19 S 2.74 57.93 5.46 -56.49 -0.31 57.62 16 20 O -0.98 -27.22 16.86 -128.00 -2.16 -29.38 16 21 O -0.96 -22.07 15.69 -128.00 -2.01 -24.08 16 22 N -1.00 -12.55 3.58 -562.68 -2.02 -14.56 16 23 C 0.06 0.35 10.24 127.77 1.31 1.66 16 24 C 0.08 0.82 10.26 127.77 1.31 2.14 16 25 C 0.18 4.01 7.31 24.98 0.18 4.20 16 26 C -0.13 -1.33 8.82 71.24 0.63 -0.71 16 27 O -0.15 -4.81 10.67 -4.87 -0.05 -4.86 16 28 H 0.04 1.98 7.79 -2.39 -0.02 1.96 16 29 H 0.03 1.37 6.06 -2.39 -0.01 1.35 16 30 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 31 H 0.05 2.29 8.14 -2.39 -0.02 2.28 16 32 H 0.09 5.12 5.95 -2.39 -0.01 5.11 16 33 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 34 H 0.18 5.45 8.06 -2.91 -0.02 5.42 16 35 H 0.11 0.05 7.79 -2.39 -0.02 0.03 16 36 H 0.08 0.18 4.42 -2.38 -0.01 0.17 16 37 H 0.07 0.41 8.01 -2.39 -0.02 0.39 16 38 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.06 0.82 7.79 -2.39 -0.02 0.81 16 40 H 0.10 0.47 7.92 -2.39 -0.02 0.45 16 41 H 0.15 0.47 6.83 -2.39 -0.02 0.46 16 42 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.13 1.11 5.96 -2.39 -0.01 1.09 16 Total: -1.00 -78.20 367.91 2.43 -75.77 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 1.05 Total: 10.16 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 5.94 Total: -20.21 kcal Atomic # 7 Polarization: -64.41 SS G_CDS: -1.77 Total: -66.18 kcal Atomic # 8 Polarization: -97.34 SS G_CDS: -4.50 Total: -101.84 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: 57.93 SS G_CDS: -0.31 Total: 57.62 kcal Total: -78.20 2.43 -75.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188065736.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.848 kcal (2) G-P(sol) polarization free energy of solvation -78.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds