Wall clock time and date at job start Wed Apr 1 2020 03:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47318 * 2 1 4 4 H 1.08999 * 109.47098 * 305.00701 * 3 2 1 5 5 N 1.46506 * 109.46578 * 65.00169 * 3 2 1 6 6 C 1.34783 * 119.99644 * 262.35467 * 5 3 2 7 7 O 1.21281 * 120.00334 * 0.02562 * 6 5 3 8 8 C 1.50699 * 119.99741 * 179.97438 * 6 5 3 9 9 S 1.81003 * 109.47086 * 180.02562 * 8 6 5 10 10 C 1.76197 * 99.99858 * 180.02562 * 9 8 6 11 11 H 1.07999 * 120.00116 * 0.02562 * 10 9 8 12 12 C 1.38805 * 119.99976 * 179.97438 * 10 9 8 13 13 N 1.31628 * 119.99844 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99834 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47367 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.46943 * 120.00161 * 14 12 10 17 17 H 1.48510 * 109.46957 * 239.99887 * 14 12 10 18 18 C 1.52995 * 109.47236 * 184.99812 * 3 2 1 19 19 H 1.08993 * 109.47856 * 306.48683 * 18 3 2 20 20 O 1.42907 * 109.47071 * 186.48668 * 18 3 2 21 21 C 1.50699 * 109.46947 * 66.49229 * 18 3 2 22 22 C 1.38420 * 120.02337 * 253.89830 * 21 18 3 23 23 F 1.35098 * 120.01322 * 0.04697 * 22 21 18 24 24 C 1.38470 * 119.97623 * 180.02562 * 22 21 18 25 25 C 1.38212 * 120.02731 * 0.02562 * 24 22 21 26 26 C 1.38211 * 120.04550 * 0.26889 * 25 24 22 27 27 C 1.38421 * 120.02701 * 73.91997 * 21 18 3 28 28 F 1.35090 * 120.01469 * 359.97438 * 27 21 18 29 29 H 1.09002 * 109.46742 * 59.99734 * 1 2 3 30 30 H 1.08999 * 109.47018 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46907 * 299.99851 * 1 2 3 32 32 H 1.08999 * 109.47257 * 240.00477 * 2 1 3 33 33 H 1.09001 * 109.47649 * 120.00189 * 2 1 3 34 34 H 0.96999 * 120.00088 * 82.36397 * 5 3 2 35 35 H 1.09001 * 109.47091 * 300.00918 * 8 6 5 36 36 H 1.09002 * 109.47186 * 60.00688 * 8 6 5 37 37 H 0.96992 * 120.00097 * 180.02562 * 13 12 10 38 38 H 0.96696 * 113.99691 * 300.00446 * 20 18 3 39 39 H 1.08002 * 119.98741 * 179.97438 * 24 22 21 40 40 H 1.07992 * 119.97716 * 179.97438 * 25 24 22 41 41 H 1.07997 * 119.98731 * 179.70391 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 7 1.6525 2.0974 1.2519 6 6 0.5551 2.8789 1.2919 7 8 -0.1118 3.0397 0.2917 8 6 0.1561 3.5521 2.5798 9 16 -1.3476 4.5235 2.3121 10 6 -1.5790 5.1812 3.9303 11 1 -0.8824 4.9350 4.7180 12 6 -2.6560 6.0166 4.1924 13 7 -3.5048 6.3171 3.2322 14 14 -2.9009 6.7145 5.9078 15 1 -1.8177 6.2278 6.7995 16 1 -2.8650 8.1979 5.8484 17 1 -4.2152 6.2720 6.4392 18 6 3.5649 1.4443 -0.1257 19 1 3.9942 0.8100 0.6497 20 8 4.0537 2.7786 0.0257 21 6 3.9577 0.9163 -1.4813 22 6 4.4955 -0.3536 -1.6008 23 9 4.6675 -1.1207 -0.5021 24 6 4.8566 -0.8376 -2.8468 25 6 4.6809 -0.0531 -3.9711 26 6 4.1497 1.2173 -3.8523 27 6 3.7816 1.7009 -2.6080 28 9 3.2568 2.9404 -2.4930 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.1857 1.9687 2.0519 35 1 -0.0310 2.7959 3.3422 36 1 0.9599 4.2100 2.9102 37 1 -4.2572 6.9012 3.4153 38 1 3.7124 3.3995 -0.6323 39 1 5.2766 -1.8283 -2.9402 40 1 4.9632 -0.4313 -4.9424 41 1 4.0172 1.8313 -4.7308 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269447704.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:23 Heat of formation + Delta-G solvation = -158.731672 kcal Electronic energy + Delta-G solvation = -28096.549800 eV Core-core repulsion = 23738.528873 eV Total energy + Delta-G solvation = -4358.020928 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.57933 -49.48743 -40.11800 -39.12255 -37.44210 -35.08740 -32.61498 -32.40667 -31.74359 -30.80677 -29.35272 -27.64060 -25.46896 -24.32171 -23.42673 -22.47001 -21.19145 -20.39336 -18.69141 -18.02790 -17.79817 -17.47021 -16.69557 -16.54176 -16.08969 -16.02301 -15.78232 -15.41431 -15.32445 -14.89405 -14.78705 -14.67669 -14.42195 -14.09624 -13.58163 -13.31162 -13.13300 -13.05425 -12.59556 -12.51921 -12.45143 -12.40879 -12.18985 -11.81677 -11.36517 -11.19779 -11.05553 -10.99663 -10.95439 -10.74475 -10.50277 -9.78210 -9.49594 -9.34809 -9.26409 -9.05627 -8.79733 -8.20728 -6.47267 -6.19986 -3.89841 0.40462 0.45495 2.78639 3.02795 3.12194 3.23071 3.29066 3.33668 3.34664 3.64810 3.87043 3.95332 4.06188 4.22408 4.26976 4.29200 4.47219 4.62779 4.80038 5.03204 5.11696 5.15388 5.16408 5.20722 5.34724 5.38496 5.41282 5.52272 5.61297 5.63094 5.75584 5.85674 5.93094 5.94990 6.12731 6.18569 6.21248 6.43678 6.63511 7.28246 7.62144 7.74536 8.37647 8.64854 9.25694 10.87529 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.023768 B = 0.002420 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.792333 B =11567.153635 C =11800.992121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.131 4.131 3 C 0.116 3.884 4 H 0.101 0.899 5 N -0.723 5.723 6 C 0.536 3.464 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.059 6.059 10 C -0.534 4.534 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.141 3.859 19 H 0.119 0.881 20 O -0.546 6.546 21 C -0.184 4.184 22 C 0.142 3.858 23 F -0.126 7.126 24 C -0.163 4.163 25 C -0.060 4.060 26 C -0.159 4.159 27 C 0.139 3.861 28 F -0.122 7.122 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.400 0.600 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.267 0.733 38 H 0.380 0.620 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.620 -16.521 -13.615 29.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.170 4.170 3 C 0.010 3.990 4 H 0.118 0.882 5 N -0.377 5.377 6 C 0.322 3.678 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.682 4.682 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C 0.081 3.919 19 H 0.136 0.864 20 O -0.354 6.354 21 C -0.187 4.187 22 C 0.122 3.878 23 F -0.104 7.104 24 C -0.182 4.182 25 C -0.078 4.078 26 C -0.178 4.178 27 C 0.119 3.881 28 F -0.101 7.101 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.234 0.766 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.232 0.768 39 H 0.163 0.837 40 H 0.164 0.836 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 18.623 -16.372 -14.787 28.870 hybrid contribution 0.532 0.458 2.339 2.442 sum 19.154 -15.914 -12.448 27.840 Atomic orbital electron populations 1.21683 0.94220 1.01057 1.03291 1.21889 0.97777 0.95256 1.02029 1.21622 0.92715 0.94677 0.89971 0.88150 1.45808 1.29085 1.50785 1.12010 1.20280 0.79534 0.77514 0.90464 1.90695 1.51636 1.60771 1.35861 1.23530 1.06365 1.03267 0.97199 1.85364 1.24100 1.57580 1.16240 1.22915 1.14758 1.34522 0.96014 0.90902 1.24994 0.94886 0.95591 0.98169 1.70025 1.13737 1.34527 1.32057 0.86120 0.78209 0.78697 0.82488 1.19616 1.20571 1.20593 1.21008 0.93517 0.85203 0.92171 0.86373 1.86603 1.72132 1.18068 1.58608 1.20523 1.05904 0.95121 0.97165 1.17102 0.98889 0.88321 0.83454 1.91540 1.92933 1.74062 1.51853 1.21247 1.03892 1.02238 0.90814 1.20906 0.95649 0.92391 0.98855 1.21267 1.02319 0.97770 0.96478 1.17209 0.96882 0.80622 0.93379 1.91455 1.83696 1.38683 1.96230 0.92210 0.93053 0.92129 0.91668 0.91478 0.76592 0.89306 0.89160 0.92271 0.76838 0.83717 0.83640 0.83589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.05 37.16 0.34 -1.60 16 2 C -0.13 -1.46 5.51 -26.73 -0.15 -1.61 16 3 C 0.12 1.44 1.96 -67.93 -0.13 1.31 16 4 H 0.10 1.48 6.46 -51.93 -0.34 1.15 16 5 N -0.72 -10.04 4.47 -53.80 -0.24 -10.28 16 6 C 0.54 9.98 6.56 -10.98 -0.07 9.90 16 7 O -0.52 -11.39 14.59 5.56 0.08 -11.31 16 8 C -0.15 -3.13 6.16 36.00 0.22 -2.91 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.53 -15.34 9.50 30.94 0.29 -15.05 16 11 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 12 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 14 Si 0.92 21.64 29.55 -169.99 -5.02 16.61 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 C 0.14 1.52 2.75 -27.89 -0.08 1.44 16 19 H 0.12 1.17 7.25 -51.93 -0.38 0.80 16 20 O -0.55 -6.74 12.97 -35.23 -0.46 -7.20 16 21 C -0.18 -1.75 4.13 -104.49 -0.43 -2.19 16 22 C 0.14 1.17 6.68 -39.43 -0.26 0.91 16 23 F -0.13 -1.11 16.26 2.25 0.04 -1.07 16 24 C -0.16 -0.97 10.02 -39.51 -0.40 -1.36 16 25 C -0.06 -0.30 10.04 -39.60 -0.40 -0.70 16 26 C -0.16 -1.06 10.03 -39.50 -0.40 -1.46 16 27 C 0.14 1.28 6.90 -39.43 -0.27 1.01 16 28 F -0.12 -1.32 13.96 2.25 0.03 -1.29 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.95 6.66 -51.93 -0.35 0.60 16 32 H 0.06 0.65 6.83 -51.93 -0.35 0.30 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.40 4.65 8.73 -40.82 -0.36 4.29 16 35 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 36 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 37 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.38 4.50 6.41 45.56 0.29 4.79 16 39 H 0.15 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.15 0.29 8.06 -52.49 -0.42 -0.13 16 41 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 365.07 15.07 5.50 5.50 Total: -1.00 -34.56 365.07 -7.78 -42.34 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -4.40 Total: 6.44 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -1.83 Total: -10.29 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.49 Total: -35.89 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.38 Total: -18.50 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.07 Total: -2.36 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.56 -7.78 -42.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269447704.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.393 kcal (2) G-P(sol) polarization free energy of solvation -34.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds