Wall clock time and date at job start Wed Apr 1 2020 03:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47318 * 2 1 4 4 H 1.08999 * 109.47098 * 305.00701 * 3 2 1 5 5 N 1.46506 * 109.46578 * 65.00169 * 3 2 1 6 6 C 1.34783 * 119.99644 * 262.35467 * 5 3 2 7 7 O 1.21281 * 120.00334 * 0.02562 * 6 5 3 8 8 C 1.50699 * 119.99741 * 179.97438 * 6 5 3 9 9 S 1.81003 * 109.47086 * 180.02562 * 8 6 5 10 10 C 1.76197 * 99.99858 * 180.02562 * 9 8 6 11 11 H 1.07999 * 120.00116 * 0.02562 * 10 9 8 12 12 C 1.38805 * 119.99976 * 179.97438 * 10 9 8 13 13 N 1.31628 * 119.99844 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99834 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47367 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.46943 * 120.00161 * 14 12 10 17 17 H 1.48510 * 109.46957 * 239.99887 * 14 12 10 18 18 C 1.52995 * 109.47236 * 184.99812 * 3 2 1 19 19 H 1.08993 * 109.47856 * 306.48683 * 18 3 2 20 20 O 1.42907 * 109.47071 * 186.48668 * 18 3 2 21 21 C 1.50699 * 109.46947 * 66.49229 * 18 3 2 22 22 C 1.38420 * 120.02337 * 253.89830 * 21 18 3 23 23 F 1.35098 * 120.01322 * 0.04697 * 22 21 18 24 24 C 1.38470 * 119.97623 * 180.02562 * 22 21 18 25 25 C 1.38212 * 120.02731 * 0.02562 * 24 22 21 26 26 C 1.38211 * 120.04550 * 0.26889 * 25 24 22 27 27 C 1.38421 * 120.02701 * 73.91997 * 21 18 3 28 28 F 1.35090 * 120.01469 * 359.97438 * 27 21 18 29 29 H 1.09002 * 109.46742 * 59.99734 * 1 2 3 30 30 H 1.08999 * 109.47018 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46907 * 299.99851 * 1 2 3 32 32 H 1.08999 * 109.47257 * 240.00477 * 2 1 3 33 33 H 1.09001 * 109.47649 * 120.00189 * 2 1 3 34 34 H 0.96999 * 120.00088 * 82.36397 * 5 3 2 35 35 H 1.09001 * 109.47091 * 300.00918 * 8 6 5 36 36 H 1.09002 * 109.47186 * 60.00688 * 8 6 5 37 37 H 0.96992 * 120.00097 * 180.02562 * 13 12 10 38 38 H 0.96696 * 113.99691 * 300.00446 * 20 18 3 39 39 H 1.08002 * 119.98741 * 179.97438 * 24 22 21 40 40 H 1.07992 * 119.97716 * 179.97438 * 25 24 22 41 41 H 1.07997 * 119.98731 * 179.70391 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 7 1.6525 2.0974 1.2519 6 6 0.5551 2.8789 1.2919 7 8 -0.1118 3.0397 0.2917 8 6 0.1561 3.5521 2.5798 9 16 -1.3476 4.5235 2.3121 10 6 -1.5790 5.1812 3.9303 11 1 -0.8824 4.9350 4.7180 12 6 -2.6560 6.0166 4.1924 13 7 -3.5048 6.3171 3.2322 14 14 -2.9009 6.7145 5.9078 15 1 -1.8177 6.2278 6.7995 16 1 -2.8650 8.1979 5.8484 17 1 -4.2152 6.2720 6.4392 18 6 3.5649 1.4443 -0.1257 19 1 3.9942 0.8100 0.6497 20 8 4.0537 2.7786 0.0257 21 6 3.9577 0.9163 -1.4813 22 6 4.4955 -0.3536 -1.6008 23 9 4.6675 -1.1207 -0.5021 24 6 4.8566 -0.8376 -2.8468 25 6 4.6809 -0.0531 -3.9711 26 6 4.1497 1.2173 -3.8523 27 6 3.7816 1.7009 -2.6080 28 9 3.2568 2.9404 -2.4930 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.1857 1.9687 2.0519 35 1 -0.0310 2.7959 3.3422 36 1 0.9599 4.2100 2.9102 37 1 -4.2572 6.9012 3.4153 38 1 3.7124 3.3995 -0.6323 39 1 5.2766 -1.8283 -2.9402 40 1 4.9632 -0.4313 -4.9424 41 1 4.0172 1.8313 -4.7308 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269447704.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:22 Heat of formation + Delta-G solvation = -182.920205 kcal Electronic energy + Delta-G solvation = -28097.598694 eV Core-core repulsion = 23738.528873 eV Total energy + Delta-G solvation = -4359.069821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.29568 -50.09214 -41.20934 -40.02890 -38.41708 -36.21983 -34.59599 -33.78503 -32.52998 -31.32903 -30.82708 -28.68772 -27.65260 -25.18379 -24.00212 -23.26763 -22.21398 -21.75903 -19.86710 -19.31639 -18.74197 -18.23432 -17.98907 -17.48179 -16.90387 -16.88488 -16.73084 -16.66801 -16.49688 -16.27989 -15.96725 -15.57444 -15.54614 -15.29165 -14.97842 -14.65735 -14.35791 -14.01877 -13.81670 -13.59143 -13.27287 -13.16977 -13.15371 -13.01410 -12.92170 -12.87539 -12.64318 -12.40945 -12.01022 -11.99367 -11.73376 -11.45528 -11.16653 -10.91477 -10.28566 -10.26268 -9.88572 -9.80778 -8.66858 -8.35841 -6.13308 -0.15497 -0.08141 1.25448 1.40337 1.45277 1.56997 1.61231 2.15086 2.26385 2.33966 2.76132 2.98258 3.12800 3.22973 3.31168 3.36329 3.50006 3.65415 3.82673 3.88580 3.94648 4.06564 4.18625 4.28061 4.31152 4.43049 4.49701 4.63311 4.69476 4.73162 4.83110 4.91848 4.99041 5.01785 5.06233 5.17474 5.31963 5.41099 5.41957 5.70872 6.19166 6.33503 6.47464 7.05631 7.23346 8.73668 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.023768 B = 0.002420 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.792333 B =11567.153635 C =11800.992121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C 0.119 3.881 4 H 0.074 0.926 5 N -0.701 5.701 6 C 0.539 3.461 7 O -0.556 6.556 8 C -0.130 4.130 9 S -0.145 6.145 10 C -0.546 4.546 11 H 0.081 0.919 12 C 0.013 3.987 13 N -0.911 5.911 14 Si 0.999 3.001 15 H -0.258 1.258 16 H -0.273 1.273 17 H -0.273 1.273 18 C 0.148 3.852 19 H 0.130 0.870 20 O -0.559 6.559 21 C -0.201 4.201 22 C 0.130 3.870 23 F -0.131 7.131 24 C -0.155 4.155 25 C -0.046 4.046 26 C -0.159 4.159 27 C 0.111 3.889 28 F -0.140 7.140 29 H 0.038 0.962 30 H 0.071 0.929 31 H 0.033 0.967 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.414 0.586 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.271 0.729 38 H 0.380 0.620 39 H 0.173 0.827 40 H 0.185 0.815 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.886 -18.522 -13.405 31.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 C 0.013 3.987 4 H 0.092 0.908 5 N -0.355 5.355 6 C 0.325 3.675 7 O -0.434 6.434 8 C -0.281 4.281 9 S 0.082 5.918 10 C -0.694 4.694 11 H 0.099 0.901 12 C -0.192 4.192 13 N -0.548 5.548 14 Si 0.821 3.179 15 H -0.182 1.182 16 H -0.199 1.199 17 H -0.198 1.198 18 C 0.088 3.912 19 H 0.147 0.853 20 O -0.368 6.368 21 C -0.204 4.204 22 C 0.110 3.890 23 F -0.109 7.109 24 C -0.173 4.173 25 C -0.064 4.064 26 C -0.178 4.178 27 C 0.092 3.908 28 F -0.119 7.119 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.251 0.749 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.080 0.920 38 H 0.231 0.769 39 H 0.190 0.810 40 H 0.202 0.798 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 20.939 -18.408 -14.568 31.457 hybrid contribution -0.061 0.963 2.148 2.355 sum 20.878 -17.445 -12.419 29.907 Atomic orbital electron populations 1.21642 0.95884 1.01565 1.00891 1.21832 0.96036 0.94420 1.03736 1.21718 0.94188 0.94914 0.87891 0.90762 1.45563 1.27395 1.49072 1.13430 1.19954 0.80412 0.77938 0.89156 1.90688 1.53325 1.62499 1.36870 1.23368 1.02965 1.02967 0.98834 1.85516 1.29068 1.59644 1.17527 1.23233 1.15260 1.34811 0.96075 0.90112 1.26129 0.94330 0.95762 1.02967 1.70183 1.14476 1.35381 1.34721 0.84904 0.78582 0.77872 0.76573 1.18155 1.19869 1.19820 1.20959 0.91751 0.84703 0.93825 0.85285 1.86568 1.72350 1.18956 1.58883 1.20390 1.07615 0.96074 0.96289 1.17291 0.99519 0.87893 0.84256 1.91525 1.93052 1.74036 1.52304 1.21636 1.02462 1.03343 0.89863 1.21381 0.93556 0.91151 1.00280 1.21595 1.01541 0.98751 0.95911 1.17579 0.98304 0.80345 0.94616 1.91406 1.84244 1.39884 1.96374 0.94327 0.91026 0.94813 0.89943 0.89627 0.74894 0.87439 0.87649 0.91974 0.76893 0.80987 0.79816 0.81978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.05 71.98 0.65 -3.16 16 2 C -0.12 -2.59 5.51 30.60 0.17 -2.42 16 3 C 0.12 2.93 1.96 44.99 0.09 3.02 16 4 H 0.07 2.30 6.46 -2.39 -0.02 2.28 16 5 N -0.70 -19.33 4.47 -442.52 -1.98 -21.30 16 6 C 0.54 20.54 6.56 87.66 0.58 21.12 16 7 O -0.56 -25.81 14.59 -3.03 -0.04 -25.85 16 8 C -0.13 -5.37 6.16 71.24 0.44 -4.93 16 9 S -0.14 -8.18 20.57 -56.49 -1.16 -9.34 16 10 C -0.55 -31.77 9.50 67.96 0.65 -31.13 16 11 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 12 C 0.01 0.74 5.49 84.86 0.47 1.21 16 13 N -0.91 -56.64 13.22 21.65 0.29 -56.36 16 14 Si 1.00 44.37 29.55 68.60 2.03 46.40 16 15 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 16 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 17 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 18 C 0.15 3.09 2.75 29.85 0.08 3.17 16 19 H 0.13 2.37 7.25 -2.39 -0.02 2.35 16 20 O -0.56 -13.88 12.97 -148.98 -1.93 -15.81 16 21 C -0.20 -3.64 4.13 -19.78 -0.08 -3.72 16 22 C 0.13 1.86 6.68 22.37 0.15 2.01 16 23 F -0.13 -2.01 16.26 44.97 0.73 -1.28 16 24 C -0.15 -1.29 10.02 22.32 0.22 -1.06 16 25 C -0.05 -0.29 10.04 22.26 0.22 -0.07 16 26 C -0.16 -1.80 10.03 22.32 0.22 -1.58 16 27 C 0.11 2.01 6.90 22.37 0.15 2.16 16 28 F -0.14 -3.20 13.96 44.97 0.63 -2.57 16 29 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.03 1.07 6.66 -2.38 -0.02 1.05 16 32 H 0.08 1.52 6.83 -2.39 -0.02 1.50 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.41 9.09 8.73 -92.71 -0.81 8.28 16 35 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 36 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 37 H 0.27 15.59 8.31 -92.71 -0.77 14.81 16 38 H 0.38 9.44 6.41 -74.06 -0.48 8.96 16 39 H 0.17 0.49 8.06 -2.91 -0.02 0.46 16 40 H 0.18 -0.24 8.06 -2.91 -0.02 -0.26 16 41 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -78.71 365.07 2.38 -76.34 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: -0.19 Total: 25.15 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 4.01 Total: -15.37 kcal Atomic # 7 Polarization: -75.97 SS G_CDS: -1.69 Total: -77.66 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -1.98 Total: -41.66 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 1.36 Total: -3.85 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: -8.18 SS G_CDS: -1.16 Total: -9.34 kcal Total: -78.71 2.38 -76.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269447704.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.583 kcal (2) G-P(sol) polarization free energy of solvation -78.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds