Wall clock time and date at job start Wed Apr 1 2020 04:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34226 * 117.00328 * 2 1 4 4 O 1.20827 * 119.99624 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00223 * 180.27778 * 3 2 1 6 6 H 1.08999 * 109.47068 * 59.72169 * 5 3 2 7 7 C 1.53002 * 109.46673 * 299.72052 * 5 3 2 8 8 C 1.53007 * 109.46543 * 174.99773 * 7 5 3 9 9 F 1.39900 * 109.47027 * 60.00683 * 8 7 5 10 10 F 1.39905 * 109.46788 * 180.02562 * 8 7 5 11 11 F 1.39888 * 109.47620 * 300.00477 * 8 7 5 12 12 N 1.46500 * 109.46959 * 179.72648 * 5 3 2 13 13 C 1.34777 * 119.99817 * 204.99709 * 12 5 3 14 14 O 1.21551 * 119.99854 * 0.02562 * 13 12 5 15 15 C 1.47888 * 120.00169 * 179.97438 * 13 12 5 16 16 C 1.39924 * 120.02348 * 359.73218 * 15 13 12 17 17 C 1.38328 * 120.35730 * 179.71328 * 16 15 13 18 18 C 1.37748 * 120.41043 * 0.55756 * 17 16 15 19 19 C 1.40751 * 120.04393 * 359.71990 * 18 17 16 20 20 C 1.41432 * 120.18326 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99808 * 334.92593 * 20 19 18 22 22 C 1.39932 * 120.00398 * 154.92862 * 20 19 18 23 23 N 1.30822 * 119.99867 * 342.58984 * 22 20 19 24 24 Si 1.86807 * 119.99970 * 162.58418 * 22 20 19 25 25 H 1.48491 * 109.46949 * 90.00304 * 24 22 20 26 26 H 1.48499 * 109.46817 * 209.99998 * 24 22 20 27 27 H 1.48498 * 109.47257 * 329.99854 * 24 22 20 28 28 C 1.38995 * 120.02731 * 179.97438 * 15 13 12 29 29 H 1.08997 * 109.46846 * 60.00231 * 1 2 3 30 30 H 1.08997 * 109.46979 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47089 * 299.99858 * 1 2 3 32 32 H 1.08993 * 109.47691 * 294.99893 * 7 5 3 33 33 H 1.09001 * 109.46877 * 55.00936 * 7 5 3 34 34 H 0.96994 * 120.00483 * 24.99685 * 12 5 3 35 35 H 1.07997 * 119.81795 * 359.97197 * 16 15 13 36 36 H 1.07996 * 119.79222 * 180.25866 * 17 16 15 37 37 H 1.08004 * 119.98388 * 179.74551 * 18 17 16 38 38 H 0.97006 * 119.99988 * 180.02562 * 23 22 20 39 39 H 1.08000 * 120.20005 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0063 6 1 3.9525 0.7783 -0.8966 7 6 4.1184 0.5845 1.2426 8 6 5.6467 0.5544 1.1751 9 9 6.1365 1.8633 1.1108 10 9 6.1515 -0.0773 2.3168 11 9 6.0495 -0.1506 0.0360 12 7 3.9817 2.6797 -0.0116 13 6 5.1852 3.0247 -0.5106 14 8 5.9258 2.1702 -0.9567 15 6 5.6044 4.4429 -0.5165 16 6 4.7495 5.4277 -0.0093 17 6 5.1369 6.7556 -0.0060 18 6 6.3635 7.1253 -0.5123 19 6 7.2345 6.1495 -1.0320 20 6 8.4948 6.5258 -1.5521 21 1 8.6466 7.5266 -1.9286 22 6 9.5450 5.6015 -1.5788 23 7 9.4891 4.5263 -0.8356 24 14 11.0268 5.9027 -2.6757 25 1 12.0514 6.6705 -1.9237 26 1 11.5988 4.6008 -3.1034 27 1 10.6078 6.6762 -3.8722 28 6 6.8456 4.7992 -1.0306 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.8046 1.1339 2.1301 33 1 3.7369 -0.4353 1.2926 34 1 3.3907 3.3615 0.3440 35 1 3.7837 5.1490 0.3856 36 1 4.4716 7.5077 0.3916 37 1 6.6573 8.1646 -0.5100 38 1 10.2174 3.8857 -0.8538 39 1 7.5072 4.0428 -1.4263 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274189976.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:42 Heat of formation + Delta-G solvation = -237.961251 kcal Electronic energy + Delta-G solvation = -31392.405226 eV Core-core repulsion = 26464.735470 eV Total energy + Delta-G solvation = -4927.669756 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.73067 -47.30476 -47.10651 -41.04250 -39.24699 -37.24560 -36.80399 -35.26622 -33.74163 -31.93262 -29.89506 -29.41219 -28.62365 -26.47510 -25.24113 -23.12246 -22.55964 -21.09389 -20.75351 -19.98100 -18.51176 -18.15941 -17.90748 -17.73567 -17.27755 -17.01482 -16.45628 -15.84629 -15.79050 -15.07655 -14.88029 -14.59877 -14.26323 -14.07584 -13.93003 -13.80439 -13.63088 -13.42071 -13.26839 -13.18974 -13.05582 -12.70080 -12.56481 -12.48595 -12.32756 -12.03788 -11.78670 -11.58562 -11.18983 -11.12449 -11.04798 -10.81243 -10.73117 -10.47991 -10.04246 -9.68121 -9.19762 -9.13151 -9.03660 -7.63252 -7.50249 -6.77754 -4.39474 1.71543 2.04538 2.21338 2.82911 2.94845 3.09493 3.12264 3.17847 3.38464 3.74796 3.93344 3.95257 4.05545 4.27237 4.45694 4.64872 4.73670 4.76332 4.83748 4.91301 5.12949 5.17327 5.30321 5.61892 5.72214 5.89726 6.09802 6.28987 6.49327 6.72030 6.98671 7.01737 7.22217 7.28205 7.38934 7.66325 7.73642 7.90268 8.00554 8.18803 8.51037 8.78808 8.83314 8.85947 10.16737 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.014038 B = 0.003700 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.078213 B = 7565.139401 C = 8787.690815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.353 6.353 3 C 0.467 3.533 4 O -0.488 6.488 5 C 0.158 3.842 6 H 0.138 0.862 7 C -0.179 4.179 8 C 0.461 3.539 9 F -0.157 7.157 10 F -0.192 7.192 11 F -0.171 7.171 12 N -0.732 5.732 13 C 0.581 3.419 14 O -0.536 6.536 15 C -0.124 4.124 16 C -0.217 4.217 17 C -0.097 4.097 18 C -0.211 4.211 19 C 0.099 3.901 20 C -0.460 4.460 21 H 0.081 0.919 22 C 0.074 3.926 23 N -0.781 5.781 24 Si 0.909 3.091 25 H -0.270 1.270 26 H -0.275 1.275 27 H -0.260 1.260 28 C -0.087 4.087 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.412 0.588 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.284 0.716 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.503 -10.663 4.086 17.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.269 6.269 3 C 0.307 3.693 4 O -0.374 6.374 5 C 0.050 3.950 6 H 0.156 0.844 7 C -0.219 4.219 8 C 0.407 3.593 9 F -0.138 7.138 10 F -0.174 7.174 11 F -0.152 7.152 12 N -0.390 5.390 13 C 0.374 3.626 14 O -0.414 6.414 15 C -0.127 4.127 16 C -0.237 4.237 17 C -0.115 4.115 18 C -0.231 4.231 19 C 0.096 3.904 20 C -0.489 4.489 21 H 0.099 0.901 22 C -0.146 4.146 23 N -0.405 5.405 24 Si 0.733 3.267 25 H -0.195 1.195 26 H -0.200 1.200 27 H -0.184 1.184 28 C -0.107 4.107 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.084 0.916 32 H 0.134 0.866 33 H 0.145 0.855 34 H 0.250 0.750 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.020 -11.188 3.824 17.587 hybrid contribution 0.318 0.435 -0.100 0.547 sum -12.703 -10.753 3.724 17.054 Atomic orbital electron populations 1.23353 0.75520 1.04053 1.02924 1.86487 1.23980 1.32518 1.83936 1.23345 0.91150 0.81947 0.72827 1.90710 1.66372 1.36190 1.44093 1.20066 0.87205 0.87072 1.00658 0.84432 1.23272 0.91129 1.06103 1.01373 1.19988 0.90902 0.74831 0.73623 1.93262 1.89571 1.35386 1.95601 1.93162 1.89618 1.82824 1.51751 1.93201 1.92265 1.78684 1.51047 1.45976 1.20640 1.05734 1.66675 1.18768 0.79043 0.90050 0.74728 1.90766 1.52044 1.51384 1.47187 1.19293 0.97302 0.89434 1.06645 1.20368 0.98944 0.93226 1.11190 1.20425 0.96223 0.94743 1.00146 1.21106 0.96498 0.98441 1.07027 1.17589 0.92642 0.90940 0.89233 1.19565 0.94462 0.98911 1.35953 0.90122 1.25955 1.00270 0.94185 0.94175 1.69788 1.32112 1.09088 1.29542 0.86300 0.80539 0.78860 0.81013 1.19482 1.19955 1.18410 1.21623 0.92922 0.97372 0.98762 0.91551 0.87697 0.91579 0.86612 0.85535 0.74954 0.89171 0.88888 0.88618 0.90437 0.84749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.29 16 2 O -0.35 -3.30 10.38 -39.25 -0.41 -3.71 16 3 C 0.47 5.43 7.32 36.00 0.26 5.70 16 4 O -0.49 -6.77 15.59 -18.75 -0.29 -7.06 16 5 C 0.16 2.04 2.71 -69.08 -0.19 1.86 16 6 H 0.14 1.86 7.10 -51.93 -0.37 1.49 16 7 C -0.18 -1.99 4.98 -26.73 -0.13 -2.12 16 8 C 0.46 7.17 2.82 37.16 0.10 7.28 16 9 F -0.16 -3.14 11.65 2.25 0.03 -3.11 16 10 F -0.19 -2.85 17.32 2.25 0.04 -2.81 16 11 F -0.17 -2.91 15.26 2.25 0.03 -2.87 16 12 N -0.73 -11.85 4.67 -55.86 -0.26 -12.12 16 13 C 0.58 12.15 5.20 -12.31 -0.06 12.09 16 14 O -0.54 -12.37 11.95 5.32 0.06 -12.31 16 15 C -0.12 -2.89 5.87 -105.04 -0.62 -3.51 16 16 C -0.22 -4.61 9.55 -38.92 -0.37 -4.99 16 17 C -0.10 -2.09 10.01 -39.73 -0.40 -2.49 16 18 C -0.21 -5.02 9.78 -38.81 -0.38 -5.40 16 19 C 0.10 2.60 5.57 -106.87 -0.59 2.01 16 20 C -0.46 -12.09 9.05 -37.73 -0.34 -12.43 16 21 H 0.08 2.01 7.90 -52.48 -0.41 1.60 16 22 C 0.07 1.86 5.14 -17.35 -0.09 1.77 16 23 N -0.78 -20.73 10.97 55.55 0.61 -20.12 16 24 Si 0.91 18.85 29.59 -169.99 -5.03 13.82 16 25 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 26 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 27 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 28 C -0.09 -2.30 8.23 -38.44 -0.32 -2.61 16 29 H 0.07 0.45 8.13 -51.93 -0.42 0.02 16 30 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 32 H 0.12 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.13 0.99 8.00 -51.93 -0.42 0.58 16 34 H 0.41 6.32 5.81 -40.82 -0.24 6.09 16 35 H 0.09 1.63 6.38 -52.49 -0.33 1.30 16 36 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 37 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 38 H 0.28 6.97 8.30 -40.82 -0.34 6.64 16 39 H 0.13 3.85 5.76 -52.49 -0.30 3.54 16 LS Contribution 343.39 15.07 5.17 5.17 Total: -1.00 -31.21 343.39 -5.84 -37.05 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -3.74 Total: 9.63 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -2.06 Total: -1.56 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.35 Total: -32.24 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.64 Total: -23.08 kcal Atomic # 9 Polarization: -8.90 SS G_CDS: 0.10 Total: -8.80 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.21 -5.84 -37.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274189976.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.908 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds