Wall clock time and date at job start Wed Apr 1 2020 03:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47468 * 302.19487 * 3 2 1 5 5 C 1.46894 * 111.00228 * 66.04149 * 4 3 2 6 6 C 1.47202 * 109.47552 * 199.52262 * 5 4 3 7 7 N 5.04339 * 110.14014 * 313.18009 * 2 1 3 8 8 C 1.46904 * 111.00333 * 190.00187 * 4 3 2 9 9 C 1.50697 * 109.46976 * 75.97163 * 8 4 3 10 10 O 1.21290 * 120.00502 * 5.21862 * 9 8 4 11 11 N 1.34780 * 119.99991 * 185.21793 * 9 8 4 12 12 C 1.46497 * 120.00242 * 184.37605 * 11 9 8 13 13 C 1.50700 * 109.47136 * 269.99681 * 12 11 9 14 14 H 1.08001 * 119.99994 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00051 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99771 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 120.00122 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47312 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47403 * 120.00084 * 17 15 13 20 20 H 1.48500 * 109.47231 * 240.00375 * 17 15 13 21 21 C 1.39929 * 119.99418 * 4.37542 * 11 9 8 22 22 C 1.38899 * 120.06705 * 67.96719 * 21 11 9 23 23 C 1.38095 * 119.95760 * 179.97438 * 22 21 11 24 24 C 1.38287 * 120.08117 * 0.06475 * 23 22 21 25 25 C 1.38375 * 120.12699 * 359.95360 * 24 23 22 26 26 Cl 1.73605 * 119.97689 * 180.02562 * 25 24 23 27 27 C 1.38246 * 120.04970 * 0.02562 * 25 24 23 28 28 H 4.40890 * 5.52176 * 179.97438 * 4 1 2 29 29 H 1.08999 * 109.47182 * 182.19069 * 3 2 1 30 30 H 1.09010 * 109.47111 * 62.19441 * 3 2 1 31 31 H 1.09000 * 109.47372 * 319.53134 * 5 4 3 32 32 H 1.09000 * 109.46922 * 79.52370 * 5 4 3 33 33 H 1.08999 * 109.46512 * 315.97477 * 8 4 3 34 34 H 1.08997 * 109.46999 * 195.97744 * 8 4 3 35 35 H 1.08998 * 109.46957 * 30.00284 * 12 11 9 36 36 H 1.09004 * 109.47155 * 149.99724 * 12 11 9 37 37 H 0.97001 * 119.99860 * 179.97438 * 16 15 13 38 38 H 1.08001 * 120.01878 * 0.03732 * 22 21 11 39 39 H 1.07993 * 119.95719 * 180.02562 * 23 22 21 40 40 H 1.07997 * 119.93393 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.04625 * 179.74712 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1361 -0.7370 1.1720 5 6 2.7872 -2.1611 1.0814 6 6 2.8577 -2.7697 2.4199 7 7 2.9105 -3.2401 3.4528 8 6 4.5849 -0.5594 1.3379 9 6 4.8613 0.8087 1.9061 10 8 3.9406 1.5253 2.2373 11 7 6.1319 1.2361 2.0462 12 6 6.4048 2.5252 2.6863 13 6 6.4212 3.6113 1.6416 14 1 6.2455 3.3658 0.6047 15 6 6.6595 4.9184 2.0098 16 7 6.8730 5.2174 3.2726 17 14 6.6792 6.2647 0.7151 18 1 6.4129 5.6715 -0.6200 19 1 5.6304 7.2682 1.0284 20 1 8.0094 6.9248 0.7075 21 6 7.1903 0.4482 1.5802 22 6 7.3622 0.2498 0.2163 23 6 8.4078 -0.5276 -0.2411 24 6 9.2832 -1.1100 0.6572 25 6 9.1149 -0.9149 2.0167 26 17 10.2165 -1.6473 3.1410 27 6 8.0702 -0.1373 2.4805 28 1 -1.0499 0.0000 0.0003 29 1 3.0089 1.0277 0.0393 30 1 3.0096 -0.4786 -0.9091 31 1 1.7756 -2.2631 0.6887 32 1 3.4878 -2.6651 0.4157 33 1 5.0760 -0.6568 0.3698 34 1 4.9685 -1.3197 2.0182 35 1 5.6273 2.7384 3.4199 36 1 7.3735 2.4857 3.1846 37 1 7.0410 6.1370 3.5316 38 1 6.6791 0.7042 -0.4861 39 1 8.5417 -0.6815 -1.3016 40 1 10.0998 -1.7179 0.2969 41 1 7.9366 0.0116 3.5418 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281375392.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:24 Heat of formation + Delta-G solvation = 73.244377 kcal Electronic energy + Delta-G solvation = -27167.967677 eV Core-core repulsion = 23268.651465 eV Total energy + Delta-G solvation = -3899.316211 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.56795 -39.90617 -38.82343 -37.52196 -37.08009 -36.32175 -34.77475 -33.85198 -31.81320 -31.14209 -30.33939 -29.46060 -28.45286 -25.45631 -24.33821 -23.56593 -23.39967 -20.59193 -19.23028 -18.93760 -18.75411 -18.53879 -17.47716 -17.21717 -16.94142 -16.60734 -16.38084 -16.02475 -15.65723 -15.45013 -15.19804 -14.89202 -14.64255 -14.45880 -14.42594 -14.27687 -14.06212 -13.56118 -13.50572 -13.36445 -13.18812 -13.00523 -12.75618 -12.63811 -12.59412 -12.49363 -12.40818 -12.19807 -11.86983 -11.73072 -11.36081 -11.03067 -10.87537 -10.65802 -10.16164 -9.78364 -9.55426 -9.23432 -8.22466 -6.36772 0.14158 0.26214 1.12223 1.36508 1.38241 1.40305 1.51643 1.72059 1.79057 1.99352 2.02597 2.13304 2.40538 2.63155 2.96591 3.08548 3.16700 3.46017 3.70914 3.91750 4.05758 4.13661 4.19567 4.24057 4.32784 4.41962 4.43292 4.56861 4.61031 4.68263 4.78385 4.96436 5.11232 5.20352 5.23977 5.36126 5.36803 5.59880 5.65706 5.73436 5.78565 5.85287 6.01618 6.57383 6.68215 6.73182 6.80358 7.26827 7.40808 8.85562 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.006188 B = 0.005131 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4523.823447 B = 5455.957130 C = 8686.583979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.211 4.211 3 C 0.172 3.828 4 N -0.547 5.547 5 C 0.151 3.849 6 C 0.235 3.765 7 N -0.487 5.487 8 C 0.052 3.948 9 C 0.504 3.496 10 O -0.554 6.554 11 N -0.567 5.567 12 C 0.267 3.733 13 C -0.531 4.531 14 H 0.062 0.938 15 C 0.006 3.994 16 N -0.932 5.932 17 Si 0.968 3.032 18 H -0.258 1.258 19 H -0.284 1.284 20 H -0.274 1.274 21 C 0.145 3.855 22 C -0.121 4.121 23 C -0.075 4.075 24 C -0.109 4.109 25 C -0.027 4.027 26 Cl -0.073 7.073 27 C -0.135 4.135 28 H 0.244 0.756 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.000 1.000 36 H 0.015 0.985 37 H 0.266 0.734 38 H 0.141 0.859 39 H 0.179 0.821 40 H 0.164 0.836 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.049 -18.312 -15.150 23.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.211 4.211 3 C 0.047 3.953 4 N -0.273 5.273 5 C 0.022 3.978 6 C -0.083 4.083 7 N -0.166 5.166 8 C -0.078 4.078 9 C 0.293 3.707 10 O -0.431 6.431 11 N -0.296 5.296 12 C 0.147 3.853 13 C -0.570 4.570 14 H 0.081 0.919 15 C -0.193 4.193 16 N -0.572 5.572 17 Si 0.792 3.208 18 H -0.182 1.182 19 H -0.210 1.210 20 H -0.199 1.199 21 C 0.054 3.946 22 C -0.140 4.140 23 C -0.093 4.093 24 C -0.128 4.128 25 C -0.055 4.055 26 Cl -0.044 7.044 27 C -0.156 4.156 28 H 0.260 0.740 29 H 0.096 0.904 30 H 0.127 0.873 31 H 0.161 0.839 32 H 0.156 0.844 33 H 0.131 0.869 34 H 0.125 0.875 35 H 0.018 0.982 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.159 0.841 39 H 0.197 0.803 40 H 0.181 0.819 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.574 -18.339 -12.776 22.358 hybrid contribution 0.284 1.391 -0.070 1.421 sum -0.290 -16.949 -12.846 21.269 Atomic orbital electron populations 1.25637 0.96719 0.99332 0.98853 1.23038 0.94666 1.01755 1.01648 1.19048 0.85403 0.99443 0.91451 1.60983 1.13022 1.09878 1.43400 1.19928 1.07240 0.85715 0.84891 1.29687 0.91421 0.92036 0.95117 1.81235 1.10804 1.11672 1.12849 1.22057 0.88843 0.93398 1.03516 1.21233 0.81422 0.89419 0.78603 1.90699 1.44088 1.58327 1.49971 1.45810 1.04878 1.19772 1.59125 1.18800 0.94586 0.79193 0.92672 1.21628 1.48453 0.92553 0.94348 0.91933 1.25876 0.94572 1.01205 0.97621 1.70076 1.49299 1.20023 1.17804 0.85354 0.77759 0.78399 0.79261 1.18178 1.21036 1.19931 1.17775 0.90368 0.93377 0.93112 1.21636 1.00092 0.99287 0.92997 1.21386 0.91896 0.94375 1.01622 1.21424 1.01005 1.00803 0.89528 1.20816 0.93268 0.99543 0.91831 1.98365 1.62124 1.81535 1.62393 1.21123 0.96029 0.98439 0.99992 0.73972 0.90432 0.87268 0.83941 0.84420 0.86868 0.87495 0.98235 0.96723 0.92541 0.84146 0.80332 0.81866 0.87029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.55 19.25 74.32 1.43 -2.12 16 2 C -0.21 -4.64 12.23 31.13 0.38 -4.26 16 3 C 0.17 3.60 5.10 84.50 0.43 4.03 16 4 N -0.55 -12.55 3.91 -923.06 -3.61 -16.16 16 5 C 0.15 2.12 5.32 84.50 0.45 2.57 16 6 C 0.24 5.43 14.86 89.44 1.33 6.76 16 7 N -0.49 -14.85 18.54 20.01 0.37 -14.48 16 8 C 0.05 1.29 4.19 85.56 0.36 1.64 16 9 C 0.50 19.74 7.11 87.66 0.62 20.37 16 10 O -0.55 -27.52 15.13 -3.06 -0.05 -27.57 16 11 N -0.57 -23.40 2.50 -635.31 -1.59 -25.00 16 12 C 0.27 14.35 5.08 85.63 0.43 14.78 16 13 C -0.53 -29.68 9.39 25.60 0.24 -29.44 16 14 H 0.06 3.36 7.81 -2.91 -0.02 3.34 16 15 C 0.01 0.34 5.46 84.65 0.46 0.80 16 16 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 17 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 18 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 21 C 0.15 4.65 4.45 38.15 0.17 4.82 16 22 C -0.12 -2.81 8.25 22.39 0.18 -2.63 16 23 C -0.07 -1.18 10.04 22.25 0.22 -0.96 16 24 C -0.11 -1.93 9.83 22.31 0.22 -1.71 16 25 C -0.03 -0.67 6.32 22.30 0.14 -0.53 16 26 Cl -0.07 -1.72 28.95 -2.72 -0.08 -1.80 16 27 C -0.14 -4.19 9.47 22.41 0.21 -3.98 16 28 H 0.24 2.75 7.80 -4.42 -0.03 2.72 16 29 H 0.08 2.23 6.90 -2.39 -0.02 2.21 16 30 H 0.11 1.24 8.12 -2.38 -0.02 1.22 16 31 H 0.14 1.48 6.85 -2.39 -0.02 1.46 16 32 H 0.14 0.65 8.00 -2.39 -0.02 0.63 16 33 H 0.11 1.89 6.34 -2.39 -0.02 1.87 16 34 H 0.11 2.54 7.28 -2.39 -0.02 2.52 16 35 H 0.00 -0.03 7.49 -2.39 -0.02 -0.05 16 36 H 0.01 0.83 7.86 -2.39 -0.02 0.81 16 37 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 38 H 0.14 3.01 7.96 -2.91 -0.02 2.98 16 39 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 40 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 41 H 0.11 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -83.49 384.42 5.70 -77.78 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 1.06 Total: 7.33 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 7.29 Total: 10.14 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -4.55 Total: -111.92 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.05 Total: -27.57 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.08 Total: -1.80 kcal Total: -83.49 5.70 -77.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281375392.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.028 kcal (2) G-P(sol) polarization free energy of solvation -83.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds