Wall clock time and date at job start Wed Apr 1 2020 03:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47028 * 90.00202 * 8 6 4 10 10 H 1.48493 * 109.46961 * 209.99772 * 8 6 4 11 11 H 1.48498 * 109.47538 * 330.00225 * 8 6 4 12 12 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 13 13 C 1.46505 * 120.00078 * 299.99998 * 12 2 1 14 14 S 1.65594 * 120.00077 * 119.99765 * 12 2 1 15 15 O 1.42103 * 106.40425 * 203.53865 * 14 12 2 16 16 O 1.42099 * 106.40087 * 336.46170 * 14 12 2 17 17 N 1.65596 * 107.21909 * 90.00126 * 14 12 2 18 18 C 1.46507 * 119.99863 * 64.99704 * 17 14 12 19 19 C 1.50699 * 109.46885 * 165.00428 * 18 17 14 20 20 N 1.29024 * 124.91945 * 89.72124 * 19 18 17 21 21 C 1.31783 * 117.12741 * 179.81140 * 20 19 18 22 22 C 1.50693 * 122.75345 * 180.22701 * 21 20 19 23 23 C 1.53004 * 117.50099 * 163.88939 * 22 21 20 24 24 C 1.52999 * 59.99968 * 252.50864 * 23 22 21 25 25 C 1.33643 * 114.49664 * 0.47574 * 21 20 19 26 26 S 1.70982 * 124.91364 * 270.02666 * 19 18 17 27 27 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 28 28 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47130 * 89.99894 * 13 12 2 32 32 H 1.08997 * 109.47212 * 209.99646 * 13 12 2 33 33 H 1.09003 * 109.46772 * 330.00259 * 13 12 2 34 34 H 0.96996 * 120.00150 * 245.00343 * 17 14 12 35 35 H 1.08996 * 109.47110 * 285.00299 * 18 17 14 36 36 H 1.08995 * 109.47173 * 45.00687 * 18 17 14 37 37 H 1.09007 * 115.55122 * 309.60193 * 22 21 20 38 38 H 1.08990 * 117.49650 * 0.02562 * 23 22 21 39 39 H 1.09000 * 117.49592 * 145.02174 * 23 22 21 40 40 H 1.09003 * 117.50102 * 252.50830 * 24 23 22 41 41 H 1.09002 * 117.51881 * 107.48116 * 24 23 22 42 42 H 1.08003 * 126.03530 * 179.71910 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.6307 -0.5440 4.4118 10 1 1.3447 -0.9490 5.1122 11 1 2.4882 -2.5654 3.7122 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 16 2.9703 0.1142 -2.2863 15 8 2.8227 -0.5646 -3.5259 16 8 2.6903 1.4972 -2.1193 17 7 4.5437 -0.1042 -1.8181 18 6 5.1357 -1.4442 -1.8416 19 6 6.6348 -1.3329 -1.7353 20 7 7.2980 -1.3231 -0.6286 21 6 8.6092 -1.2230 -0.7146 22 6 9.5066 -1.2046 0.4957 23 6 10.9981 -1.4638 0.2734 24 6 10.1264 -2.5324 0.9360 25 6 9.0773 -1.1339 -1.9632 26 16 7.7024 -1.1938 -3.0635 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 0.7091 1.1614 3.4844 31 1 0.7375 -2.1444 -1.9994 32 1 2.4628 -2.5819 -1.9865 33 1 1.5295 -2.5969 -0.4708 34 1 5.0733 0.6550 -1.5283 35 1 4.7539 -2.0248 -1.0019 36 1 4.8736 -1.9408 -2.7758 37 1 9.2295 -0.4955 1.2758 38 1 11.3302 -1.6471 -0.7483 39 1 11.7024 -0.9249 0.9072 40 1 10.2573 -2.6967 2.0056 41 1 9.8847 -3.4194 0.3503 42 1 10.1151 -1.0408 -2.2475 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282358779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:09 Heat of formation + Delta-G solvation = -0.228876 kcal Electronic energy + Delta-G solvation = -26205.596885 eV Core-core repulsion = 22440.582292 eV Total energy + Delta-G solvation = -3765.014593 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.28759 -37.15989 -36.73227 -36.16363 -35.31283 -35.06693 -32.59382 -30.36878 -29.08816 -27.20175 -25.52740 -25.16547 -24.94098 -22.63715 -21.66925 -20.79560 -19.56803 -18.99396 -18.20867 -17.24173 -16.84753 -16.40735 -16.12647 -15.95132 -15.45386 -15.10177 -14.52351 -14.33136 -14.06378 -13.48728 -13.43251 -13.20038 -12.96145 -12.74414 -12.69276 -12.01415 -11.83385 -11.81887 -11.67139 -11.56233 -11.49619 -11.39313 -11.20864 -10.96138 -10.87290 -10.86712 -10.69660 -10.41872 -10.20684 -10.07819 -9.79070 -9.58897 -9.42995 -9.19290 -8.87519 -8.46143 -7.98753 -6.07761 -4.15902 0.44195 1.13827 1.25497 1.56935 2.54319 3.27680 3.34527 3.36044 3.45272 3.48031 3.86540 4.08344 4.38083 4.45830 4.61212 4.68708 4.90626 4.91698 4.97951 5.15429 5.23422 5.33623 5.36583 5.50524 5.56489 5.63540 5.79849 5.84737 5.89577 5.96365 6.15012 6.31393 6.65575 6.86901 6.87455 7.08510 7.14468 7.48916 7.62829 7.63445 7.79033 8.05584 8.26579 8.86864 9.50588 10.97336 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.009940 B = 0.004125 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.147496 B = 6786.683848 C = 8974.907114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.525 4.525 5 H 0.064 0.936 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.988 5.988 13 C 0.104 3.896 14 S 2.783 3.217 15 O -0.996 6.996 16 O -0.976 6.976 17 N -1.123 6.123 18 C 0.201 3.799 19 C 0.047 3.953 20 N -0.445 5.445 21 C 0.101 3.899 22 C -0.084 4.084 23 C -0.171 4.171 24 C -0.162 4.162 25 C -0.261 4.261 26 S 0.137 5.863 27 H 0.093 0.907 28 H 0.012 0.988 29 H 0.033 0.967 30 H 0.263 0.737 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.416 0.584 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.123 0.877 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.311 -6.427 -8.154 19.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.564 4.564 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.831 5.831 13 C -0.043 4.043 14 S 2.792 3.208 15 O -0.979 6.979 16 O -0.960 6.960 17 N -0.882 5.882 18 C 0.071 3.929 19 C -0.233 4.233 20 N -0.160 5.160 21 C -0.032 4.032 22 C -0.105 4.105 23 C -0.209 4.209 24 C -0.200 4.200 25 C -0.400 4.400 26 S 0.392 5.608 27 H 0.111 0.889 28 H 0.031 0.969 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.249 0.751 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.141 0.859 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 15.354 -5.982 -9.474 19.008 hybrid contribution 1.280 -0.296 2.209 2.570 sum 16.635 -6.278 -7.266 19.207 Atomic orbital electron populations 1.22053 0.97891 0.99685 1.00770 1.18745 0.91890 0.92747 0.80097 0.92351 1.21365 1.31762 1.13170 0.90112 0.91832 1.24907 0.94893 0.94966 0.98987 1.69877 1.36258 1.22635 1.23782 0.86532 0.78572 0.79979 0.82498 1.20661 1.21275 1.19916 1.57707 1.64104 1.21456 1.39851 1.21239 0.99054 0.81968 1.01993 1.01840 0.72348 0.73298 0.73354 1.93545 1.85869 1.76393 1.42124 1.93608 1.83266 1.32269 1.86830 1.56150 1.32573 1.13943 1.85558 1.19685 0.83779 0.85526 1.03909 1.26975 1.01204 1.04296 0.90805 1.66030 1.06487 1.14411 1.29060 1.19382 0.88931 1.01446 0.93411 1.20367 0.92069 1.01695 0.96395 1.23036 0.92270 1.03195 1.02366 1.22983 1.02735 0.92704 1.01539 1.26855 1.03904 1.13706 0.95567 1.84088 0.97499 1.66683 1.12558 0.88890 0.96887 0.94834 0.92675 0.93679 0.93293 0.90007 0.75076 0.88151 0.88593 0.85921 0.88600 0.87987 0.88043 0.88663 0.80599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 8.97 37.16 0.33 -3.08 16 2 C 0.27 6.49 2.62 -69.08 -0.18 6.31 16 3 H 0.06 1.58 6.91 -51.93 -0.36 1.22 16 4 C -0.52 -13.41 7.99 -34.44 -0.28 -13.68 16 5 H 0.06 1.58 7.33 -52.49 -0.38 1.19 16 6 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.47 11.32 55.43 0.63 -23.84 16 8 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.99 -19.98 3.12 -115.84 -0.36 -20.34 16 13 C 0.10 1.77 9.28 59.85 0.56 2.33 16 14 S 2.78 53.16 6.09 -107.50 -0.66 52.51 16 15 O -1.00 -19.39 16.68 -57.17 -0.95 -20.35 16 16 O -0.98 -21.98 16.70 -57.17 -0.95 -22.94 16 17 N -1.12 -17.94 6.05 -11.65 -0.07 -18.01 16 18 C 0.20 2.80 6.82 -5.19 -0.04 2.77 16 19 C 0.05 0.63 6.78 -13.46 -0.09 0.54 16 20 N -0.45 -6.60 10.53 -8.06 -0.08 -6.68 16 21 C 0.10 1.25 6.41 -84.23 -0.54 0.71 16 22 C -0.08 -0.88 6.30 -91.77 -0.58 -1.46 16 23 C -0.17 -1.27 9.91 -26.73 -0.26 -1.53 16 24 C -0.16 -1.41 10.23 -26.73 -0.27 -1.68 16 25 C -0.26 -2.67 10.52 29.12 0.31 -2.36 16 26 S 0.14 1.47 23.18 -107.50 -2.49 -1.02 16 27 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 28 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.03 0.73 7.67 -51.93 -0.40 0.34 16 30 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.69 7.79 -51.93 -0.40 0.29 16 33 H 0.08 1.43 7.02 -51.93 -0.36 1.06 16 34 H 0.42 6.36 8.64 -34.47 -0.30 6.06 16 35 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.10 1.16 7.75 -51.93 -0.40 0.75 16 37 H 0.12 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.10 0.61 6.79 -51.93 -0.35 0.26 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.18 1.30 6.96 -52.48 -0.37 0.93 16 LS Contribution 373.93 15.07 5.64 5.64 Total: -1.00 -31.98 373.93 -11.21 -43.19 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.74 Total: 5.69 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -1.14 Total: -9.52 kcal Atomic # 7 Polarization: -68.98 SS G_CDS: 0.11 Total: -68.87 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -1.91 Total: -43.28 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 54.63 SS G_CDS: -3.15 Total: 51.49 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.98 -11.21 -43.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282358779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.963 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds