Wall clock time and date at job start Wed Apr 1 2020 03:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47028 * 90.00202 * 8 6 4 10 10 H 1.48493 * 109.46961 * 209.99772 * 8 6 4 11 11 H 1.48498 * 109.47538 * 330.00225 * 8 6 4 12 12 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 13 13 C 1.46505 * 120.00078 * 299.99998 * 12 2 1 14 14 S 1.65594 * 120.00077 * 119.99765 * 12 2 1 15 15 O 1.42103 * 106.40425 * 203.53865 * 14 12 2 16 16 O 1.42099 * 106.40087 * 336.46170 * 14 12 2 17 17 N 1.65596 * 107.21909 * 90.00126 * 14 12 2 18 18 C 1.46507 * 119.99863 * 64.99704 * 17 14 12 19 19 C 1.50699 * 109.46885 * 165.00428 * 18 17 14 20 20 N 1.29024 * 124.91945 * 89.72124 * 19 18 17 21 21 C 1.31783 * 117.12741 * 179.81140 * 20 19 18 22 22 C 1.50693 * 122.75345 * 180.22701 * 21 20 19 23 23 C 1.53004 * 117.50099 * 163.88939 * 22 21 20 24 24 C 1.52999 * 59.99968 * 252.50864 * 23 22 21 25 25 C 1.33643 * 114.49664 * 0.47574 * 21 20 19 26 26 S 1.70982 * 124.91364 * 270.02666 * 19 18 17 27 27 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 28 28 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47130 * 89.99894 * 13 12 2 32 32 H 1.08997 * 109.47212 * 209.99646 * 13 12 2 33 33 H 1.09003 * 109.46772 * 330.00259 * 13 12 2 34 34 H 0.96996 * 120.00150 * 245.00343 * 17 14 12 35 35 H 1.08996 * 109.47110 * 285.00299 * 18 17 14 36 36 H 1.08995 * 109.47173 * 45.00687 * 18 17 14 37 37 H 1.09007 * 115.55122 * 309.60193 * 22 21 20 38 38 H 1.08990 * 117.49650 * 0.02562 * 23 22 21 39 39 H 1.09000 * 117.49592 * 145.02174 * 23 22 21 40 40 H 1.09003 * 117.50102 * 252.50830 * 24 23 22 41 41 H 1.09002 * 117.51881 * 107.48116 * 24 23 22 42 42 H 1.08003 * 126.03530 * 179.71910 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.6307 -0.5440 4.4118 10 1 1.3447 -0.9490 5.1122 11 1 2.4882 -2.5654 3.7122 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 16 2.9703 0.1142 -2.2863 15 8 2.8227 -0.5646 -3.5259 16 8 2.6903 1.4972 -2.1193 17 7 4.5437 -0.1042 -1.8181 18 6 5.1357 -1.4442 -1.8416 19 6 6.6348 -1.3329 -1.7353 20 7 7.2980 -1.3231 -0.6286 21 6 8.6092 -1.2230 -0.7146 22 6 9.5066 -1.2046 0.4957 23 6 10.9981 -1.4638 0.2734 24 6 10.1264 -2.5324 0.9360 25 6 9.0773 -1.1339 -1.9632 26 16 7.7024 -1.1938 -3.0635 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 0.7091 1.1614 3.4844 31 1 0.7375 -2.1444 -1.9994 32 1 2.4628 -2.5819 -1.9865 33 1 1.5295 -2.5969 -0.4708 34 1 5.0733 0.6550 -1.5283 35 1 4.7539 -2.0248 -1.0019 36 1 4.8736 -1.9408 -2.7758 37 1 9.2295 -0.4955 1.2758 38 1 11.3302 -1.6471 -0.7483 39 1 11.7024 -0.9249 0.9072 40 1 10.2573 -2.6967 2.0056 41 1 9.8847 -3.4194 0.3503 42 1 10.1151 -1.0408 -2.2475 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282358779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:08 Heat of formation + Delta-G solvation = -22.848374 kcal Electronic energy + Delta-G solvation = -26206.577740 eV Core-core repulsion = 22440.582292 eV Total energy + Delta-G solvation = -3765.995448 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.17167 -38.39835 -37.94882 -37.83285 -36.94195 -36.22466 -34.50557 -31.32337 -30.92290 -28.23102 -27.23488 -26.98331 -25.80894 -23.25122 -22.68551 -22.51032 -20.53617 -20.37597 -19.20865 -18.74648 -18.33841 -18.27227 -17.46204 -16.92790 -16.70911 -16.27928 -16.04116 -15.39772 -15.17777 -14.97744 -14.84857 -14.47327 -14.41616 -13.94052 -13.70287 -13.56779 -13.45791 -13.23500 -13.15842 -13.09462 -12.97402 -12.74087 -12.70076 -12.41045 -12.27588 -12.18430 -12.12278 -11.89583 -11.56991 -11.37880 -11.20376 -10.81078 -10.52615 -10.48938 -10.45829 -9.75656 -9.63638 -8.08955 -6.22693 -0.56762 -0.20769 0.32431 0.69159 1.43793 1.46006 1.54207 1.60060 2.03129 2.45492 2.58245 2.69511 3.05710 3.20001 3.42766 3.59577 3.93334 3.97704 4.05559 4.08950 4.22082 4.33374 4.46164 4.55560 4.62699 4.72734 4.75958 4.82720 4.93538 4.98988 5.04468 5.09421 5.16734 5.16985 5.23334 5.29180 5.61845 5.65160 5.83805 5.93377 6.12345 6.29815 6.73683 6.86540 7.46735 8.95631 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.009940 B = 0.004125 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.147496 B = 6786.683848 C = 8974.907114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.274 3.726 3 H 0.024 0.976 4 C -0.527 4.527 5 H 0.069 0.931 6 C 0.018 3.982 7 N -0.917 5.917 8 Si 0.954 3.046 9 H -0.284 1.284 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.995 5.995 13 C 0.095 3.905 14 S 2.802 3.198 15 O -0.997 6.997 16 O -1.014 7.014 17 N -1.117 6.117 18 C 0.196 3.804 19 C 0.017 3.983 20 N -0.480 5.480 21 C 0.077 3.923 22 C -0.112 4.112 23 C -0.144 4.144 24 C -0.166 4.166 25 C -0.246 4.246 26 S 0.181 5.819 27 H 0.069 0.931 28 H 0.020 0.980 29 H 0.045 0.955 30 H 0.263 0.737 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.419 0.581 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.534 -7.995 -9.116 22.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.169 3.831 3 H 0.042 0.958 4 C -0.566 4.566 5 H 0.087 0.913 6 C -0.182 4.182 7 N -0.557 5.557 8 Si 0.781 3.219 9 H -0.211 1.211 10 H -0.211 1.211 11 H -0.189 1.189 12 N -0.837 5.837 13 C -0.050 4.050 14 S 2.811 3.189 15 O -0.980 6.980 16 O -0.998 6.998 17 N -0.878 5.878 18 C 0.067 3.933 19 C -0.261 4.261 20 N -0.196 5.196 21 C -0.055 4.055 22 C -0.133 4.133 23 C -0.182 4.182 24 C -0.203 4.203 25 C -0.385 4.385 26 S 0.435 5.565 27 H 0.087 0.913 28 H 0.039 0.961 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.253 0.747 35 H 0.112 0.888 36 H 0.134 0.866 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.125 0.875 41 H 0.109 0.891 42 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 17.568 -7.579 -10.453 21.803 hybrid contribution 0.690 0.175 2.423 2.525 sum 18.258 -7.404 -8.030 21.276 Atomic orbital electron populations 1.21931 0.97689 1.00186 0.99970 1.18382 0.92047 0.91315 0.81323 0.95849 1.21632 1.31235 1.13068 0.90663 0.91295 1.25628 0.95233 0.95629 1.01687 1.70007 1.37501 1.23969 1.24209 0.85615 0.77615 0.79359 0.79341 1.21069 1.21139 1.18855 1.57593 1.64859 1.22688 1.38562 1.21476 1.00834 0.80285 1.02409 1.01131 0.72599 0.72143 0.73060 1.93536 1.86255 1.76174 1.42017 1.93553 1.84235 1.34743 1.87282 1.55864 1.31407 1.15232 1.85299 1.19837 0.84633 0.84089 1.04726 1.26807 1.01161 1.06150 0.92003 1.66009 1.08050 1.15104 1.30431 1.19671 0.88413 1.02545 0.94863 1.20406 0.94042 1.02681 0.96123 1.23162 0.90419 1.01242 1.03333 1.23033 1.03048 0.92178 1.02062 1.27265 1.05299 1.11233 0.94717 1.83877 0.96517 1.65307 1.10776 0.91276 0.96093 0.93567 0.92808 0.92634 0.90248 0.90490 0.74747 0.88827 0.86572 0.87370 0.87028 0.86422 0.87507 0.89064 0.77454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.61 8.97 71.98 0.65 -5.96 16 2 C 0.27 13.45 2.62 44.25 0.12 13.56 16 3 H 0.02 1.32 6.91 -2.39 -0.02 1.31 16 4 C -0.53 -27.03 7.99 25.60 0.20 -26.83 16 5 H 0.07 3.39 7.33 -2.91 -0.02 3.37 16 6 C 0.02 0.95 5.30 84.66 0.45 1.40 16 7 N -0.92 -51.62 11.32 21.45 0.24 -51.38 16 8 Si 0.95 42.59 29.54 68.60 2.03 44.62 16 9 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 10 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 12 N -0.99 -39.90 3.12 -520.42 -1.62 -41.52 16 13 C 0.10 3.11 9.28 127.77 1.19 4.29 16 14 S 2.80 106.30 6.09 -56.49 -0.34 105.95 16 15 O -1.00 -37.38 16.68 -128.00 -2.14 -39.51 16 16 O -1.01 -46.58 16.70 -128.00 -2.14 -48.72 16 17 N -1.12 -35.33 6.05 -190.79 -1.15 -36.49 16 18 C 0.20 5.29 6.82 85.63 0.58 5.87 16 19 C 0.02 0.45 6.78 88.52 0.60 1.05 16 20 N -0.48 -14.04 10.53 -179.40 -1.89 -15.93 16 21 C 0.08 1.81 6.41 41.52 0.27 2.08 16 22 C -0.11 -2.22 6.30 -11.54 -0.07 -2.29 16 23 C -0.14 -1.75 9.91 30.60 0.30 -1.44 16 24 C -0.17 -2.65 10.23 30.59 0.31 -2.33 16 25 C -0.25 -4.39 10.52 66.78 0.70 -3.69 16 26 S 0.18 3.47 23.18 -56.49 -1.31 2.16 16 27 H 0.07 3.65 6.07 -2.39 -0.01 3.64 16 28 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 2.03 7.67 -2.39 -0.02 2.01 16 30 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.08 2.08 7.79 -2.39 -0.02 2.06 16 33 H 0.08 2.59 7.02 -2.39 -0.02 2.57 16 34 H 0.42 12.92 8.64 -96.75 -0.84 12.08 16 35 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.12 2.59 7.75 -2.39 -0.02 2.57 16 37 H 0.11 2.38 8.14 -2.38 -0.02 2.36 16 38 H 0.11 0.99 6.79 -2.39 -0.02 0.97 16 39 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.21 2.21 6.96 -2.91 -0.02 2.19 16 Total: -1.00 -69.12 373.93 -2.81 -71.93 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.22 Total: 23.16 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 5.30 Total: -14.29 kcal Atomic # 7 Polarization: -140.89 SS G_CDS: -4.42 Total: -145.32 kcal Atomic # 8 Polarization: -83.95 SS G_CDS: -4.27 Total: -88.23 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: 109.77 SS G_CDS: -1.65 Total: 108.11 kcal Total: -69.12 -2.81 -71.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282358779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.083 kcal (2) G-P(sol) polarization free energy of solvation -69.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds