Wall clock time and date at job start Wed Apr 1 2020 03:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47535 * 2 1 4 4 C 1.46504 * 119.99742 * 275.00265 * 3 2 1 5 5 C 1.50704 * 109.46887 * 274.99499 * 4 3 2 6 6 H 1.07997 * 119.99814 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99679 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99431 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00258 * 0.02562 * 7 5 4 10 10 H 1.48491 * 109.47450 * 89.99733 * 9 7 5 11 11 H 1.48506 * 109.46858 * 210.00048 * 9 7 5 12 12 H 1.48500 * 109.47256 * 329.99730 * 9 7 5 13 13 S 1.65599 * 120.00381 * 94.99900 * 3 2 1 14 14 O 1.42104 * 106.39905 * 336.46012 * 13 3 2 15 15 O 1.42095 * 106.40452 * 203.54281 * 13 3 2 16 16 N 1.65602 * 107.21657 * 89.99744 * 13 3 2 17 17 C 1.46498 * 119.99612 * 65.28266 * 16 13 3 18 18 C 1.50703 * 109.47212 * 164.72359 * 17 16 13 19 19 C 1.38903 * 120.74774 * 89.99668 * 18 17 16 20 20 C 1.38024 * 119.34309 * 179.97438 * 19 18 17 21 21 N 1.31964 * 120.86174 * 359.97438 * 20 19 18 22 22 C 1.32454 * 121.61273 * 0.02562 * 21 20 19 23 23 S 1.76202 * 119.71016 * 179.97438 * 22 21 20 24 24 C 1.81394 * 103.00042 * 0.02562 * 23 22 21 25 25 C 1.38269 * 120.73899 * 269.71763 * 18 17 16 26 26 H 1.09007 * 109.47291 * 300.00196 * 1 2 3 27 27 H 1.09000 * 109.47103 * 59.99917 * 1 2 3 28 28 H 1.08994 * 109.47573 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46845 * 239.99673 * 2 1 3 30 30 H 1.09000 * 109.47103 * 120.00082 * 2 1 3 31 31 H 1.08994 * 109.47518 * 34.99789 * 4 3 2 32 32 H 1.09000 * 109.47078 * 155.00216 * 4 3 2 33 33 H 0.97006 * 119.99357 * 180.02562 * 8 7 5 34 34 H 0.97001 * 119.99942 * 244.99790 * 16 13 3 35 35 H 1.08996 * 109.46882 * 284.72133 * 17 16 13 36 36 H 1.08999 * 109.47498 * 44.72066 * 17 16 13 37 37 H 1.07999 * 120.32955 * 359.95323 * 19 18 17 38 38 H 1.08005 * 119.56700 * 179.97438 * 20 19 18 39 39 H 1.09004 * 109.47519 * 300.00188 * 24 23 22 40 40 H 1.09000 * 109.47085 * 59.99880 * 24 23 22 41 41 H 1.08997 * 109.47484 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.46013 * 0.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1086 -1.2640 5 6 3.4948 1.7886 -1.8824 6 1 4.1720 1.1109 -1.3839 7 6 3.8530 2.3612 -3.0844 8 7 5.0192 2.0815 -3.6243 9 14 2.6819 3.5339 -3.9461 10 1 2.9466 4.9220 -3.4899 11 1 2.8866 3.4478 -5.4145 12 1 1.2813 3.1641 -3.6191 13 16 2.4123 2.1202 1.4286 14 8 1.6868 1.4415 2.4448 15 8 2.3058 3.5185 1.1997 16 7 4.0145 1.8135 1.7137 17 6 5.0355 2.3572 0.8148 18 6 6.3869 2.2654 1.4754 19 6 7.1823 1.1385 1.3116 20 6 8.4154 1.0854 1.9295 21 7 8.8450 2.0893 2.6705 22 6 8.1164 3.1806 2.8510 23 16 8.7390 4.4908 3.8513 24 6 10.3593 3.8678 4.3776 25 6 6.8651 3.3035 2.2536 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3618 1.8097 -1.9453 32 1 2.0923 3.1802 -1.0757 33 1 5.2713 2.4847 -4.4698 34 1 4.2771 1.2773 2.4782 35 1 5.0449 1.7849 -0.1128 36 1 4.8084 3.4005 0.5956 37 1 6.8393 0.3120 0.7070 38 1 9.0367 0.2108 1.8050 39 1 10.2284 2.9406 4.9356 40 1 10.9786 3.6797 3.5006 41 1 10.8448 4.6088 5.0125 42 1 6.2746 4.1959 2.3988 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336930329.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:02 Heat of formation + Delta-G solvation = -43.247810 kcal Electronic energy + Delta-G solvation = -26396.818635 eV Core-core repulsion = 22629.938601 eV Total energy + Delta-G solvation = -3766.880034 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.06375 -36.80993 -36.27057 -35.52244 -35.33730 -32.74543 -31.95140 -31.26377 -30.29318 -29.02376 -27.24104 -26.08000 -23.63380 -22.97972 -22.14661 -21.62774 -18.94359 -17.91282 -17.26254 -17.07745 -16.73629 -16.45846 -16.07715 -15.71641 -15.11151 -14.75809 -14.35708 -14.27842 -14.01075 -13.95410 -13.53641 -13.37901 -13.25086 -12.85346 -12.77100 -12.51396 -12.39884 -12.11366 -11.97805 -11.71298 -11.56637 -11.52508 -11.46426 -11.19471 -11.05263 -10.61261 -10.53908 -10.50275 -10.19337 -9.90785 -9.75757 -9.63756 -9.60094 -8.99946 -8.73302 -8.19641 -7.63013 -6.26036 -4.27386 0.96524 1.05629 1.36776 1.40139 2.16851 3.21325 3.28355 3.32268 3.40264 3.74978 4.06567 4.27793 4.49918 4.68393 4.97857 4.99624 5.05420 5.06800 5.09060 5.17953 5.27645 5.30175 5.61009 5.62089 5.65962 5.67983 5.75137 5.92842 5.95801 6.06824 6.20501 6.35574 6.47431 6.54617 6.56300 6.62866 6.81067 7.05505 7.18180 7.40078 7.48372 7.71738 8.29689 8.72745 9.34779 10.84913 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.011454 B = 0.003734 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.038278 B = 7495.962798 C = 8720.233933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.130 3.870 3 N -0.986 5.986 4 C 0.211 3.789 5 C -0.549 4.549 6 H 0.086 0.914 7 C 0.080 3.920 8 N -0.889 5.889 9 Si 0.868 3.132 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.264 1.264 13 S 2.789 3.211 14 O -0.995 6.995 15 O -0.981 6.981 16 N -1.124 6.124 17 C 0.147 3.853 18 C -0.023 4.023 19 C -0.154 4.154 20 C 0.108 3.892 21 N -0.493 5.493 22 C 0.114 3.886 23 S -0.086 6.086 24 C -0.128 4.128 25 C -0.134 4.134 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.043 0.957 33 H 0.266 0.734 34 H 0.408 0.592 35 H 0.121 0.879 36 H 0.090 0.910 37 H 0.143 0.857 38 H 0.159 0.841 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.816 -2.067 11.208 12.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.004 3.996 3 N -0.827 5.827 4 C 0.088 3.912 5 C -0.587 4.587 6 H 0.104 0.896 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.695 3.305 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.188 1.188 13 S 2.797 3.203 14 O -0.980 6.980 15 O -0.964 6.964 16 N -0.883 5.883 17 C 0.022 3.978 18 C -0.034 4.034 19 C -0.177 4.177 20 C -0.051 4.051 21 N -0.207 5.207 22 C -0.134 4.134 23 S 0.152 5.848 24 C -0.297 4.297 25 C -0.160 4.160 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.240 0.760 35 H 0.138 0.862 36 H 0.108 0.892 37 H 0.161 0.839 38 H 0.176 0.824 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.119 0.881 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.705 -0.341 12.164 13.046 hybrid contribution -0.241 -1.055 -1.383 1.756 sum 4.464 -1.396 10.781 11.752 Atomic orbital electron populations 1.22218 0.96922 1.01596 1.02283 1.21011 0.93564 0.82459 1.02615 1.57518 1.78761 1.23129 1.23314 1.19611 0.98279 0.92210 0.81136 1.21472 1.01057 1.29557 1.06636 0.89609 1.24824 0.94932 0.95899 0.96761 1.69876 1.20394 1.43455 1.18925 0.86963 0.82191 0.82244 0.79133 1.19664 1.21069 1.18814 1.01639 0.72515 0.73628 0.72561 1.93562 1.70355 1.76228 1.57817 1.93566 1.85929 1.31173 1.85756 1.55951 1.25148 1.68515 1.38687 1.20678 0.82103 1.01951 0.93062 1.20379 0.96328 0.92835 0.93851 1.22155 0.95377 0.99222 1.00961 1.22649 0.94042 0.96117 0.92294 1.67948 1.34332 1.00630 1.17754 1.22900 0.94158 0.96735 0.99644 1.85544 1.20034 1.21428 1.57795 1.23407 0.96191 1.05128 1.04999 1.21670 0.95415 1.00612 0.98320 0.92578 0.92263 0.92132 0.89865 0.91536 0.94438 0.93874 0.92361 0.76002 0.86188 0.89214 0.83880 0.82417 0.89613 0.89545 0.88147 0.84163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 10.24 37.16 0.38 -2.08 16 2 C 0.13 2.06 6.06 -4.05 -0.02 2.03 16 3 N -0.99 -18.39 2.82 -115.67 -0.33 -18.72 16 4 C 0.21 4.56 4.50 -5.19 -0.02 4.54 16 5 C -0.55 -13.14 8.62 -34.44 -0.30 -13.44 16 6 H 0.09 2.11 6.07 -52.49 -0.32 1.79 16 7 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 8 N -0.89 -24.17 13.96 55.43 0.77 -23.39 16 9 Si 0.87 19.79 27.47 -169.99 -4.67 15.12 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 13 S 2.79 51.40 6.10 -107.50 -0.66 50.74 16 14 O -1.00 -19.08 17.11 -57.17 -0.98 -20.05 16 15 O -0.98 -21.07 16.15 -57.17 -0.92 -21.99 16 16 N -1.12 -17.62 6.05 -11.66 -0.07 -17.69 16 17 C 0.15 2.47 6.07 -5.19 -0.03 2.44 16 18 C -0.02 -0.34 5.31 -104.36 -0.55 -0.90 16 19 C -0.15 -2.08 9.81 -39.41 -0.39 -2.46 16 20 C 0.11 1.37 11.17 -17.57 -0.20 1.17 16 21 N -0.49 -6.87 9.43 -12.11 -0.11 -6.98 16 22 C 0.11 1.62 7.00 -16.92 -0.12 1.51 16 23 S -0.09 -1.04 22.55 -107.50 -2.42 -3.46 16 24 C -0.13 -1.17 10.02 101.05 1.01 -0.16 16 25 C -0.13 -1.97 9.54 -39.21 -0.37 -2.34 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.32 8.11 -51.93 -0.42 0.90 16 30 H 0.07 0.95 7.61 -51.93 -0.40 0.55 16 31 H 0.04 0.80 7.17 -51.93 -0.37 0.43 16 32 H 0.04 0.98 6.34 -51.93 -0.33 0.65 16 33 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.41 5.43 8.64 -34.47 -0.30 5.13 16 35 H 0.12 2.26 4.82 -51.93 -0.25 2.01 16 36 H 0.09 1.62 7.70 -51.93 -0.40 1.22 16 37 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.16 1.50 8.06 -52.48 -0.42 1.08 16 39 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 40 H 0.09 0.82 8.14 -51.92 -0.42 0.39 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.14 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 373.99 15.07 5.64 5.64 Total: -1.00 -30.25 373.99 -10.22 -40.47 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -5.76 Total: 8.07 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -0.71 Total: -7.75 kcal Atomic # 7 Polarization: -67.05 SS G_CDS: 0.26 Total: -66.78 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -1.90 Total: -42.04 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.67 Total: 15.12 kcal Atomic # 16 Polarization: 50.36 SS G_CDS: -3.08 Total: 47.28 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.25 -10.22 -40.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336930329.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.780 kcal (2) G-P(sol) polarization free energy of solvation -30.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds