Wall clock time and date at job start Wed Apr 1 2020 03:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47535 * 2 1 4 4 C 1.46504 * 119.99742 * 275.00265 * 3 2 1 5 5 C 1.50704 * 109.46887 * 274.99499 * 4 3 2 6 6 H 1.07997 * 119.99814 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99679 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99431 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00258 * 0.02562 * 7 5 4 10 10 H 1.48491 * 109.47450 * 89.99733 * 9 7 5 11 11 H 1.48506 * 109.46858 * 210.00048 * 9 7 5 12 12 H 1.48500 * 109.47256 * 329.99730 * 9 7 5 13 13 S 1.65599 * 120.00381 * 94.99900 * 3 2 1 14 14 O 1.42104 * 106.39905 * 336.46012 * 13 3 2 15 15 O 1.42095 * 106.40452 * 203.54281 * 13 3 2 16 16 N 1.65602 * 107.21657 * 89.99744 * 13 3 2 17 17 C 1.46498 * 119.99612 * 65.28266 * 16 13 3 18 18 C 1.50703 * 109.47212 * 164.72359 * 17 16 13 19 19 C 1.38903 * 120.74774 * 89.99668 * 18 17 16 20 20 C 1.38024 * 119.34309 * 179.97438 * 19 18 17 21 21 N 1.31964 * 120.86174 * 359.97438 * 20 19 18 22 22 C 1.32454 * 121.61273 * 0.02562 * 21 20 19 23 23 S 1.76202 * 119.71016 * 179.97438 * 22 21 20 24 24 C 1.81394 * 103.00042 * 0.02562 * 23 22 21 25 25 C 1.38269 * 120.73899 * 269.71763 * 18 17 16 26 26 H 1.09007 * 109.47291 * 300.00196 * 1 2 3 27 27 H 1.09000 * 109.47103 * 59.99917 * 1 2 3 28 28 H 1.08994 * 109.47573 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46845 * 239.99673 * 2 1 3 30 30 H 1.09000 * 109.47103 * 120.00082 * 2 1 3 31 31 H 1.08994 * 109.47518 * 34.99789 * 4 3 2 32 32 H 1.09000 * 109.47078 * 155.00216 * 4 3 2 33 33 H 0.97006 * 119.99357 * 180.02562 * 8 7 5 34 34 H 0.97001 * 119.99942 * 244.99790 * 16 13 3 35 35 H 1.08996 * 109.46882 * 284.72133 * 17 16 13 36 36 H 1.08999 * 109.47498 * 44.72066 * 17 16 13 37 37 H 1.07999 * 120.32955 * 359.95323 * 19 18 17 38 38 H 1.08005 * 119.56700 * 179.97438 * 20 19 18 39 39 H 1.09004 * 109.47519 * 300.00188 * 24 23 22 40 40 H 1.09000 * 109.47085 * 59.99880 * 24 23 22 41 41 H 1.08997 * 109.47484 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.46013 * 0.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1086 -1.2640 5 6 3.4948 1.7886 -1.8824 6 1 4.1720 1.1109 -1.3839 7 6 3.8530 2.3612 -3.0844 8 7 5.0192 2.0815 -3.6243 9 14 2.6819 3.5339 -3.9461 10 1 2.9466 4.9220 -3.4899 11 1 2.8866 3.4478 -5.4145 12 1 1.2813 3.1641 -3.6191 13 16 2.4123 2.1202 1.4286 14 8 1.6868 1.4415 2.4448 15 8 2.3058 3.5185 1.1997 16 7 4.0145 1.8135 1.7137 17 6 5.0355 2.3572 0.8148 18 6 6.3869 2.2654 1.4754 19 6 7.1823 1.1385 1.3116 20 6 8.4154 1.0854 1.9295 21 7 8.8450 2.0893 2.6705 22 6 8.1164 3.1806 2.8510 23 16 8.7390 4.4908 3.8513 24 6 10.3593 3.8678 4.3776 25 6 6.8651 3.3035 2.2536 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3618 1.8097 -1.9453 32 1 2.0923 3.1802 -1.0757 33 1 5.2713 2.4847 -4.4698 34 1 4.2771 1.2773 2.4782 35 1 5.0449 1.7849 -0.1128 36 1 4.8084 3.4005 0.5956 37 1 6.8393 0.3120 0.7070 38 1 9.0367 0.2108 1.8050 39 1 10.2284 2.9406 4.9356 40 1 10.9786 3.6797 3.5006 41 1 10.8448 4.6088 5.0125 42 1 6.2746 4.1959 2.3988 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336930329.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:01 Heat of formation + Delta-G solvation = -64.232846 kcal Electronic energy + Delta-G solvation = -26397.728614 eV Core-core repulsion = 22629.938601 eV Total energy + Delta-G solvation = -3767.790013 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.14808 -38.37452 -37.77471 -36.92817 -36.82452 -34.61172 -33.14585 -32.31785 -31.77631 -29.77285 -28.90731 -27.35708 -24.70469 -24.54775 -23.34292 -23.11270 -20.42094 -19.27060 -18.85724 -18.63661 -18.13997 -17.59797 -17.35267 -17.01705 -16.49420 -16.09402 -15.77983 -15.55307 -15.27360 -14.96417 -14.79138 -14.71426 -14.26528 -14.20113 -14.14689 -13.90669 -13.72518 -13.57807 -13.46001 -13.20031 -13.09134 -12.89777 -12.77460 -12.71356 -12.58693 -12.19962 -12.07980 -11.70863 -11.52443 -11.50933 -10.96306 -10.75019 -10.73048 -10.69860 -10.42741 -9.76814 -8.59653 -8.23076 -6.25351 -0.41156 -0.04853 0.15223 0.44363 1.32013 1.39312 1.45094 1.49502 1.96466 2.38847 2.53354 2.70067 3.12266 3.32066 3.48251 3.67298 3.93351 3.96889 4.05157 4.15492 4.33503 4.35716 4.38179 4.44953 4.51197 4.58801 4.70834 4.74468 4.83995 4.92392 4.97578 5.00237 5.03330 5.06666 5.33532 5.41392 5.47436 5.53122 5.55663 5.79712 6.09866 6.36938 6.66182 6.78876 7.38596 8.89693 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.011454 B = 0.003734 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.038278 B = 7495.962798 C = 8720.233933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.120 3.880 3 N -0.989 5.989 4 C 0.217 3.783 5 C -0.534 4.534 6 H 0.075 0.925 7 C 0.034 3.966 8 N -0.928 5.928 9 Si 0.910 3.090 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.247 1.247 13 S 2.801 3.199 14 O -1.000 7.000 15 O -1.012 7.012 16 N -1.110 6.110 17 C 0.158 3.842 18 C -0.034 4.034 19 C -0.158 4.158 20 C 0.113 3.887 21 N -0.499 5.499 22 C 0.104 3.896 23 S -0.097 6.097 24 C -0.119 4.119 25 C -0.148 4.148 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.033 0.967 33 H 0.265 0.735 34 H 0.421 0.579 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.153 0.847 38 H 0.193 0.807 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.127 0.873 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.989 -2.972 12.200 13.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.005 4.005 3 N -0.829 5.829 4 C 0.092 3.908 5 C -0.572 4.572 6 H 0.093 0.907 7 C -0.166 4.166 8 N -0.568 5.568 9 Si 0.735 3.265 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.170 1.170 13 S 2.809 3.191 14 O -0.984 6.984 15 O -0.996 6.996 16 N -0.872 5.872 17 C 0.032 3.968 18 C -0.045 4.045 19 C -0.181 4.181 20 C -0.046 4.046 21 N -0.212 5.212 22 C -0.144 4.144 23 S 0.141 5.859 24 C -0.288 4.288 25 C -0.175 4.175 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.255 0.745 35 H 0.118 0.882 36 H 0.089 0.911 37 H 0.171 0.829 38 H 0.209 0.791 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.145 0.855 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.848 -1.263 13.187 14.107 hybrid contribution -0.217 -0.828 -1.589 1.805 sum 4.631 -2.090 11.599 12.663 Atomic orbital electron populations 1.22209 0.95578 1.03363 1.01653 1.21290 0.94764 0.80916 1.03535 1.57463 1.79168 1.24239 1.22064 1.19391 0.97098 0.91996 0.82334 1.21691 1.01655 1.27985 1.05912 0.90731 1.25423 0.95998 0.97435 0.97790 1.69976 1.22049 1.45222 1.19520 0.86279 0.81653 0.80386 0.78195 1.20183 1.21072 1.17014 1.01138 0.72802 0.72836 0.72312 1.93550 1.70876 1.76092 1.57865 1.93526 1.86576 1.33324 1.86166 1.55631 1.24065 1.68495 1.38975 1.20382 0.83451 1.00313 0.92646 1.20250 0.95691 0.93959 0.94615 1.22305 0.95671 0.98953 1.01168 1.23191 0.93845 0.96671 0.90937 1.68044 1.34301 1.00793 1.18088 1.23161 0.94049 0.97429 0.99759 1.85581 1.22123 1.20985 1.57216 1.23498 0.94120 1.05922 1.05255 1.21719 0.96111 1.00649 0.98998 0.93369 0.92695 0.89224 0.89817 0.89777 0.93636 0.94928 0.92590 0.74452 0.88227 0.91090 0.82896 0.79069 0.89433 0.89705 0.85470 0.84308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.50 10.24 71.98 0.74 -3.76 16 2 C 0.12 3.60 6.06 86.38 0.52 4.13 16 3 N -0.99 -36.08 2.82 -519.86 -1.47 -37.55 16 4 C 0.22 9.23 4.50 85.63 0.39 9.61 16 5 C -0.53 -25.63 8.62 25.60 0.22 -25.41 16 6 H 0.07 3.71 6.07 -2.91 -0.02 3.70 16 7 C 0.03 1.73 5.47 84.65 0.46 2.20 16 8 N -0.93 -51.22 13.96 21.45 0.30 -50.92 16 9 Si 0.91 40.43 27.47 68.60 1.88 42.31 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 12 H -0.25 -10.18 6.54 99.48 0.65 -9.53 16 13 S 2.80 102.08 6.10 -56.49 -0.34 101.74 16 14 O -1.00 -37.09 17.11 -128.00 -2.19 -39.28 16 15 O -1.01 -43.79 16.15 -128.00 -2.07 -45.86 16 16 N -1.11 -34.61 6.05 -190.79 -1.15 -35.76 16 17 C 0.16 5.40 6.07 85.63 0.52 5.92 16 18 C -0.03 -1.03 5.31 -19.70 -0.10 -1.13 16 19 C -0.16 -4.11 9.81 22.38 0.22 -3.90 16 20 C 0.11 2.64 11.17 84.62 0.95 3.59 16 21 N -0.50 -13.15 9.43 -192.21 -1.81 -14.96 16 22 C 0.10 2.89 7.00 84.83 0.59 3.49 16 23 S -0.10 -2.25 22.55 -56.49 -1.27 -3.52 16 24 C -0.12 -1.93 10.02 113.37 1.14 -0.80 16 25 C -0.15 -4.40 9.54 22.51 0.21 -4.18 16 26 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 27 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.08 2.51 8.11 -2.39 -0.02 2.49 16 30 H 0.08 2.22 7.61 -2.39 -0.02 2.20 16 31 H 0.05 1.88 7.17 -2.39 -0.02 1.86 16 32 H 0.03 1.48 6.34 -2.39 -0.02 1.46 16 33 H 0.26 14.03 8.31 -92.70 -0.77 13.26 16 34 H 0.42 10.88 8.64 -96.74 -0.84 10.04 16 35 H 0.10 3.86 4.82 -2.39 -0.01 3.85 16 36 H 0.07 2.68 7.70 -2.39 -0.02 2.66 16 37 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 38 H 0.19 3.07 8.06 -2.91 -0.02 3.05 16 39 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16 41 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -64.08 373.99 -2.12 -66.20 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.15 Total: 27.85 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 5.85 Total: -10.25 kcal Atomic # 7 Polarization: -135.05 SS G_CDS: -4.14 Total: -139.19 kcal Atomic # 8 Polarization: -80.88 SS G_CDS: -4.26 Total: -85.14 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 1.88 Total: 42.31 kcal Atomic # 16 Polarization: 99.84 SS G_CDS: -1.62 Total: 98.22 kcal Total: -64.08 -2.12 -66.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336930329.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.965 kcal (2) G-P(sol) polarization free energy of solvation -64.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds