Wall clock time and date at job start Wed Apr 1 2020 04:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 117.00137 * 2 1 4 4 O 1.20833 * 119.99852 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00432 * 179.71953 * 3 2 1 6 6 H 1.09000 * 109.58871 * 320.56557 * 5 3 2 7 7 C 1.53197 * 109.58461 * 80.98489 * 5 3 2 8 8 H 1.08998 * 109.50121 * 185.10232 * 7 5 3 9 9 C 1.50702 * 109.49871 * 305.20617 * 7 5 3 10 10 O 1.20822 * 119.99933 * 0.02562 * 9 7 5 11 11 O 1.34227 * 119.99665 * 179.97438 * 9 7 5 12 12 C 1.45206 * 116.99780 * 179.97438 * 11 9 7 13 13 C 1.53048 * 109.31077 * 65.15574 * 7 5 3 14 14 C 1.53038 * 109.53539 * 61.36209 * 13 7 5 15 15 C 1.53185 * 109.31839 * 298.63521 * 14 13 7 16 16 N 1.46922 * 109.59113 * 200.27553 * 5 3 2 17 17 C 1.34776 * 120.62779 * 113.80439 * 16 5 3 18 18 O 1.21280 * 120.00520 * 359.97438 * 17 16 5 19 19 C 1.50706 * 119.99889 * 180.02562 * 17 16 5 20 20 S 1.81000 * 109.47096 * 179.97438 * 19 17 16 21 21 C 1.76196 * 99.99845 * 179.97438 * 20 19 17 22 22 H 1.07994 * 120.00208 * 0.02562 * 21 20 19 23 23 C 1.38800 * 120.00337 * 180.02562 * 21 20 19 24 24 N 1.31634 * 119.99308 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00563 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47537 * 89.99633 * 25 23 21 27 27 H 1.48500 * 109.46998 * 209.99923 * 25 23 21 28 28 H 1.48497 * 109.46996 * 329.99583 * 25 23 21 29 29 H 1.08997 * 109.47380 * 299.99656 * 1 2 3 30 30 H 1.08997 * 109.47403 * 60.00337 * 1 2 3 31 31 H 1.09007 * 109.47110 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47108 * 300.00232 * 12 11 9 33 33 H 1.08996 * 109.46994 * 60.00281 * 12 11 9 34 34 H 1.08995 * 109.47125 * 180.02562 * 12 11 9 35 35 H 1.09006 * 109.45530 * 301.34691 * 13 7 5 36 36 H 1.08997 * 109.46090 * 181.38775 * 13 7 5 37 37 H 1.09005 * 109.49696 * 178.68115 * 14 13 7 38 38 H 1.09005 * 109.49646 * 58.59205 * 14 13 7 39 39 H 1.08998 * 109.59092 * 294.85211 * 15 14 13 40 40 H 1.09000 * 109.70825 * 174.48971 * 15 14 13 41 41 H 1.09003 * 109.46115 * 299.99227 * 19 17 16 42 42 H 1.08994 * 109.47295 * 59.98930 * 19 17 16 43 43 H 0.97008 * 119.99695 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0064 6 1 3.9699 0.5034 0.6622 7 6 4.0971 1.0727 -1.4164 8 1 5.1864 1.0396 -1.3970 9 6 3.5636 -0.2220 -1.9732 10 8 2.8335 -0.9127 -1.3025 11 8 3.8987 -0.6074 -3.2145 12 6 3.3483 -1.8660 -3.6851 13 6 3.6372 2.2360 -2.2982 14 6 4.2056 3.5479 -1.7523 15 6 3.6760 3.7780 -0.3334 16 7 3.9881 2.5984 0.4850 17 6 4.6485 2.7279 1.6527 18 8 4.8995 1.7465 2.3195 19 6 5.0741 4.0924 2.1303 20 16 5.9311 3.9360 3.7169 21 6 6.3059 5.6289 4.0303 22 1 6.0058 6.3882 3.3234 23 6 6.9868 5.9867 5.1856 24 7 7.3521 5.0612 6.0475 25 14 7.3835 7.7814 5.5183 26 1 6.2698 8.4017 6.2799 27 1 8.6363 7.8728 6.3104 28 1 7.5600 8.4965 4.2289 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.6751 -2.6732 -3.0296 33 1 2.2597 -1.8113 -3.6792 34 1 3.6973 -2.0584 -4.6996 35 1 2.5482 2.2838 -2.2973 36 1 3.9929 2.0821 -3.3170 37 1 3.8969 4.3731 -2.3941 38 1 5.2939 3.4914 -1.7298 39 1 2.5965 3.9251 -0.3656 40 1 4.1520 4.6585 0.0983 41 1 5.7447 4.5409 1.3974 42 1 4.1950 4.7248 2.2533 43 1 7.8277 5.3112 6.8551 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338028615.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:45 Heat of formation + Delta-G solvation = -211.346579 kcal Electronic energy + Delta-G solvation = -29367.641707 eV Core-core repulsion = 25118.426742 eV Total energy + Delta-G solvation = -4249.214966 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.117 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.69517 -41.20257 -40.71209 -38.58821 -37.63694 -37.14721 -34.59103 -34.53810 -33.09858 -30.89477 -29.22467 -28.46564 -27.68597 -26.67493 -25.70714 -22.95826 -22.86602 -21.67859 -20.42328 -19.66715 -18.76048 -18.61680 -18.32795 -17.91771 -17.62252 -17.35014 -17.13105 -16.86781 -16.61245 -16.29061 -15.77539 -15.60349 -15.11461 -14.72404 -14.70453 -14.49467 -14.47407 -14.31694 -13.95294 -13.68733 -13.65389 -13.19392 -13.13144 -13.07317 -12.88589 -12.78881 -12.60956 -12.31021 -12.14960 -12.04992 -11.83573 -11.71840 -11.64731 -11.54902 -11.30078 -11.13275 -11.03022 -10.26596 -9.92080 -8.67159 -8.33621 -6.12016 0.87928 1.01644 1.12861 1.28951 1.37769 1.44101 1.53101 1.63686 1.74801 2.13886 2.27669 3.00973 3.10516 3.22107 3.42720 3.55699 3.68854 3.72183 3.93047 4.01598 4.15230 4.21268 4.22651 4.26021 4.30948 4.35327 4.38328 4.43929 4.53679 4.57408 4.63430 4.75576 4.79541 4.93729 4.99890 5.21603 5.22849 5.34691 5.40264 5.43688 6.04703 6.21395 6.60501 6.66739 6.91979 7.07913 8.75611 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.019874 B = 0.002726 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.518440 B =10268.865880 C =10514.772056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.325 6.325 3 C 0.454 3.546 4 O -0.518 6.518 5 C 0.162 3.838 6 H 0.118 0.882 7 C -0.079 4.079 8 H 0.149 0.851 9 C 0.454 3.546 10 O -0.491 6.491 11 O -0.354 6.354 12 C 0.030 3.970 13 C -0.109 4.109 14 C -0.124 4.124 15 C 0.086 3.914 16 N -0.589 5.589 17 C 0.541 3.459 18 O -0.555 6.555 19 C -0.121 4.121 20 S -0.149 6.149 21 C -0.543 4.543 22 H 0.085 0.915 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 0.999 3.001 26 H -0.270 1.270 27 H -0.279 1.279 28 H -0.255 1.255 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.123 0.877 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.132 0.868 35 H 0.060 0.940 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.107 0.893 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.409 -7.888 -25.821 28.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.239 6.239 3 C 0.296 3.704 4 O -0.408 6.408 5 C 0.056 3.944 6 H 0.136 0.864 7 C -0.099 4.099 8 H 0.166 0.834 9 C 0.295 3.705 10 O -0.378 6.378 11 O -0.271 6.271 12 C -0.063 4.063 13 C -0.146 4.146 14 C -0.162 4.162 15 C -0.035 4.035 16 N -0.324 5.324 17 C 0.329 3.671 18 O -0.433 6.433 19 C -0.272 4.272 20 S 0.078 5.922 21 C -0.691 4.691 22 H 0.104 0.896 23 C -0.192 4.192 24 N -0.549 5.549 25 Si 0.820 3.180 26 H -0.196 1.196 27 H -0.204 1.204 28 H -0.179 1.179 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.142 0.858 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.150 0.850 35 H 0.078 0.922 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.121 0.879 41 H 0.139 0.861 42 H 0.125 0.875 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.432 -9.337 -24.499 28.217 hybrid contribution -0.498 1.511 0.237 1.608 sum -10.930 -7.827 -24.262 27.738 Atomic orbital electron populations 1.23492 0.76067 1.05148 1.02074 1.86896 1.23641 1.31035 1.82308 1.24035 0.92172 0.82090 0.72066 1.90589 1.67366 1.36705 1.46093 1.20261 0.87765 0.88541 0.97866 0.86420 1.21342 1.04871 0.92061 0.91651 0.83369 1.23478 0.78567 0.87753 0.80672 1.90861 1.33554 1.54268 1.59105 1.86466 1.68328 1.41501 1.30777 1.23550 0.99487 0.81737 1.01543 1.21627 1.01051 0.91989 0.99943 1.21936 1.02131 0.97865 0.94218 1.22370 1.02767 0.86516 0.91882 1.47827 1.56201 1.07068 1.21261 1.20308 0.76394 0.90668 0.79703 1.90703 1.55960 1.40919 1.55678 1.23363 1.04790 0.96547 1.02481 1.85624 1.72388 1.13130 1.21044 1.23187 1.43175 0.92367 1.10356 0.89649 1.26129 0.94530 1.03894 0.94612 1.70190 1.37942 1.35603 1.11119 0.84949 0.77768 0.76357 0.78890 1.19565 1.20386 1.17884 0.92679 0.91682 0.85831 0.92082 0.91934 0.84980 0.92169 0.86702 0.86710 0.89507 0.89707 0.87942 0.86072 0.87498 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.73 16 2 O -0.32 -9.07 7.00 -43.35 -0.30 -9.37 16 3 C 0.45 13.23 5.73 71.23 0.41 13.63 16 4 O -0.52 -16.09 13.67 21.94 0.30 -15.79 16 5 C 0.16 4.45 2.44 44.23 0.11 4.56 16 6 H 0.12 3.80 7.00 -2.39 -0.02 3.78 16 7 C -0.08 -1.51 2.56 -11.46 -0.03 -1.54 16 8 H 0.15 2.36 8.14 -2.39 -0.02 2.34 16 9 C 0.45 9.21 6.96 71.24 0.50 9.70 16 10 O -0.49 -12.60 11.93 29.97 0.36 -12.24 16 11 O -0.35 -5.62 10.45 -51.39 -0.54 -6.15 16 12 C 0.03 0.32 10.56 113.37 1.20 1.52 16 13 C -0.11 -1.53 4.95 30.62 0.15 -1.38 16 14 C -0.12 -1.64 6.08 30.67 0.19 -1.46 16 15 C 0.09 1.81 5.84 86.36 0.50 2.31 16 16 N -0.59 -16.95 2.55 -799.19 -2.04 -18.99 16 17 C 0.54 20.65 7.72 87.66 0.68 21.33 16 18 O -0.56 -26.04 15.27 -3.03 -0.05 -26.09 16 19 C -0.12 -4.79 4.50 71.24 0.32 -4.47 16 20 S -0.15 -8.23 20.57 -56.49 -1.16 -9.40 16 21 C -0.54 -30.60 9.50 67.95 0.65 -29.95 16 22 H 0.09 4.43 7.80 -2.91 -0.02 4.41 16 23 C 0.01 0.74 5.49 84.86 0.47 1.20 16 24 N -0.91 -55.87 13.22 21.65 0.29 -55.58 16 25 Si 1.00 43.22 29.55 68.60 2.03 45.25 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 27 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 28 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 29 H 0.05 1.18 8.13 -2.39 -0.02 1.16 16 30 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 31 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 33 H 0.06 0.68 8.13 -2.39 -0.02 0.67 16 34 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.06 1.02 7.07 -2.38 -0.02 1.00 16 36 H 0.11 1.07 8.09 -2.39 -0.02 1.05 16 37 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.08 1.96 6.15 -2.39 -0.01 1.95 16 40 H 0.10 2.02 5.93 -2.39 -0.01 2.01 16 41 H 0.12 4.12 7.69 -2.39 -0.02 4.10 16 42 H 0.11 3.94 7.94 -2.40 -0.02 3.92 16 43 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 Total: -1.00 -81.38 367.67 6.25 -75.14 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 1.03 Total: 16.04 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: 6.33 Total: 17.18 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -1.75 Total: -74.57 kcal Atomic # 8 Polarization: -69.41 SS G_CDS: -0.23 Total: -69.64 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.40 kcal Total: -81.38 6.25 -75.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338028615.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.212 kcal (2) G-P(sol) polarization free energy of solvation -81.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds