Wall clock time and date at job start Wed Apr 1 2020 04:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99752 * 2 1 4 4 H 1.48498 * 109.47187 * 269.99694 * 3 2 1 5 5 H 1.48497 * 109.47444 * 29.99930 * 3 2 1 6 6 H 1.48506 * 109.46999 * 150.00228 * 3 2 1 7 7 C 1.38947 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99744 * 359.97438 * 7 2 1 9 9 N 1.37091 * 119.99916 * 180.02562 * 7 2 1 10 10 C 1.34781 * 120.00019 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99362 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00338 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47336 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00243 * 179.97438 * 13 12 10 15 15 O 1.21590 * 119.99814 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00239 * 179.97438 * 14 13 12 17 17 C 1.46495 * 119.99875 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47200 * 180.02562 * 17 16 14 19 19 C 1.50690 * 109.47663 * 180.02562 * 18 17 16 20 20 C 1.38255 * 119.97863 * 100.00033 * 19 18 17 21 21 C 1.38199 * 120.09097 * 179.72460 * 20 19 18 22 22 C 1.38448 * 120.04557 * 359.97438 * 21 20 19 23 23 F 1.35095 * 120.02611 * 180.02562 * 22 21 20 24 24 C 1.38582 * 119.95626 * 0.02562 * 22 21 20 25 25 F 1.35096 * 120.04458 * 179.97438 * 24 22 21 26 26 C 1.38412 * 119.97973 * 279.73013 * 19 18 17 27 27 F 1.35095 * 120.01859 * 0.27373 * 26 19 18 28 28 H 0.97002 * 119.99748 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00261 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.47102 * 60.00198 * 12 10 9 31 31 H 1.08996 * 109.47217 * 300.00084 * 12 10 9 32 32 H 0.96996 * 119.99922 * 0.02562 * 13 12 10 33 33 H 0.96996 * 119.99926 * 0.02562 * 16 14 13 34 34 H 1.09002 * 109.47077 * 60.01155 * 17 16 14 35 35 H 1.09002 * 109.47684 * 300.00133 * 17 16 14 36 36 H 1.09007 * 109.46674 * 59.99815 * 18 17 16 37 37 H 1.09005 * 109.47161 * 300.00683 * 18 17 16 38 38 H 1.07998 * 119.95068 * 359.74606 * 20 19 18 39 39 H 1.07999 * 119.98029 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2032 0.0000 10 6 4.0538 -2.3704 0.0000 11 8 3.4473 -3.4209 -0.0009 12 6 5.5608 -2.3705 0.0000 13 7 6.0491 -3.7516 0.0006 14 6 7.3742 -3.9979 0.0002 15 8 8.1643 -3.0737 -0.0002 16 7 7.8235 -5.2686 0.0013 17 6 9.2638 -5.5362 0.0014 18 6 9.5017 -7.0477 0.0021 19 6 10.9832 -7.3231 0.0028 20 6 11.6239 -7.6533 1.1826 21 6 12.9815 -7.9119 1.1850 22 6 13.7027 -7.8412 0.0053 23 9 15.0296 -8.0946 0.0080 24 6 13.0624 -7.5103 -1.1784 25 9 13.7645 -7.4403 -2.3304 26 6 11.7008 -7.2507 -1.1785 27 9 11.0743 -6.9279 -2.3311 28 1 -0.4850 0.8401 0.0004 29 1 3.8649 -0.3632 0.0004 30 1 5.9241 -1.8567 0.8900 31 1 5.9241 -1.8566 -0.8899 32 1 5.4188 -4.4889 0.0006 33 1 7.1932 -6.0059 0.0020 34 1 9.7149 -5.0968 0.8911 35 1 9.7149 -5.0982 -0.8890 36 1 9.0505 -7.4868 -0.8878 37 1 9.0505 -7.4861 0.8922 38 1 11.0625 -7.7096 2.1036 39 1 13.4802 -8.1694 2.1077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345933938.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:58 Heat of formation + Delta-G solvation = -172.120682 kcal Electronic energy + Delta-G solvation = -28103.200008 eV Core-core repulsion = 23210.678064 eV Total energy + Delta-G solvation = -4892.521944 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.23779 -49.67672 -48.92727 -40.08955 -39.59326 -38.41630 -35.79596 -34.49137 -33.75475 -32.85033 -31.80579 -31.18222 -29.12544 -27.43077 -24.68819 -23.92662 -23.77256 -22.13500 -20.84234 -19.66971 -18.97756 -18.83168 -18.53345 -18.16548 -17.72386 -17.28873 -16.48359 -16.35774 -15.93309 -15.85914 -15.62244 -15.38961 -15.33440 -15.03516 -14.98669 -14.74997 -14.73250 -14.32838 -14.09882 -13.87393 -13.23601 -13.13870 -12.96133 -12.60974 -12.50195 -12.20935 -12.18263 -12.15307 -12.02500 -11.70713 -11.24154 -10.64958 -10.19285 -10.07103 -9.70876 -9.52858 -9.38656 -9.30417 -8.78300 -8.73718 -8.31515 -6.41900 -3.94544 0.07850 0.13128 2.43871 2.68347 2.80279 2.99069 3.03965 3.12177 3.28026 3.56258 3.58391 3.63742 3.76864 3.86125 4.02715 4.15113 4.32138 4.51259 4.54188 4.61412 4.84882 4.94451 5.13158 5.14631 5.16551 5.21256 5.33122 5.56871 5.61591 5.67633 5.78715 5.84015 5.98951 6.33645 6.60141 6.95200 7.43791 7.98904 8.11509 8.43071 8.67529 8.80536 9.28721 9.62250 10.70194 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.031055 B = 0.001566 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.417293 B =17873.909528 C =18007.173225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.310 4.310 8 H 0.122 0.878 9 N -0.576 5.576 10 C 0.438 3.562 11 O -0.580 6.580 12 C 0.126 3.874 13 N -0.724 5.724 14 C 0.706 3.294 15 O -0.597 6.597 16 N -0.749 5.749 17 C 0.144 3.856 18 C -0.094 4.094 19 C -0.095 4.095 20 C -0.063 4.063 21 C -0.132 4.132 22 C 0.095 3.905 23 F -0.120 7.120 24 C 0.034 3.966 25 F -0.116 7.116 26 C 0.104 3.896 27 F -0.113 7.113 28 H 0.276 0.724 29 H 0.375 0.625 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.408 0.592 33 H 0.398 0.602 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.155 0.845 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.611 -16.865 2.671 31.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.439 4.439 8 H 0.139 0.861 9 N -0.214 5.214 10 C 0.224 3.776 11 O -0.464 6.464 12 C -0.003 4.003 13 N -0.382 5.382 14 C 0.405 3.595 15 O -0.476 6.476 16 N -0.406 5.406 17 C 0.020 3.980 18 C -0.131 4.131 19 C -0.097 4.097 20 C -0.081 4.081 21 C -0.151 4.151 22 C 0.074 3.926 23 F -0.098 7.098 24 C 0.013 3.987 25 F -0.095 7.095 26 C 0.084 3.916 27 F -0.091 7.091 28 H 0.086 0.914 29 H 0.208 0.792 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.246 0.754 33 H 0.232 0.768 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.173 0.827 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 26.743 -16.547 2.567 31.553 hybrid contribution 0.320 0.751 -0.527 0.972 sum 27.063 -15.796 2.040 31.402 Atomic orbital electron populations 1.69621 1.05715 1.27821 1.48155 1.25067 0.95536 0.98182 0.97115 0.86670 0.79917 0.83740 0.79164 1.19380 1.19990 1.19195 1.19436 0.78965 0.96792 1.48696 0.86088 1.42115 1.07688 1.06148 1.65410 1.19655 0.88089 0.84869 0.84974 1.90533 1.69258 1.30923 1.55715 1.20806 0.93338 0.82848 1.03273 1.44738 1.05158 1.09367 1.78895 1.15803 0.82599 0.83086 0.77965 1.90916 1.55197 1.43136 1.58325 1.44949 1.07593 1.06516 1.81526 1.21069 0.80670 0.93260 1.03022 1.20784 0.90188 0.96862 1.05285 1.19728 0.96887 1.01756 0.91284 1.20959 0.93340 0.96012 0.97834 1.21193 0.94649 1.02138 0.97115 1.17424 0.78850 1.03291 0.92987 1.91575 1.29773 1.91407 1.97056 1.17599 0.89279 1.09078 0.82751 1.91576 1.77929 1.94056 1.45919 1.17245 0.88359 1.02638 0.83402 1.91594 1.81578 1.89664 1.46268 0.91383 0.79217 0.89862 0.89853 0.75426 0.76755 0.91080 0.91363 0.89077 0.88637 0.82705 0.82651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.78 13.96 55.50 0.77 -24.00 16 2 C 0.05 1.20 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 18.87 27.74 -169.99 -4.71 14.15 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 7 C -0.31 -8.47 10.16 -14.94 -0.15 -8.62 16 8 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 9 N -0.58 -13.23 5.09 -10.97 -0.06 -13.29 16 10 C 0.44 9.46 7.85 -10.99 -0.09 9.38 16 11 O -0.58 -14.34 15.24 5.54 0.08 -14.25 16 12 C 0.13 2.15 6.15 -5.20 -0.03 2.12 16 13 N -0.72 -11.15 5.53 -66.42 -0.37 -11.52 16 14 C 0.71 10.48 8.57 -86.92 -0.74 9.73 16 15 O -0.60 -10.97 16.34 5.29 0.09 -10.88 16 16 N -0.75 -7.60 5.56 -65.23 -0.36 -7.97 16 17 C 0.14 1.23 5.65 -4.04 -0.02 1.21 16 18 C -0.09 -0.47 5.18 -27.89 -0.14 -0.62 16 19 C -0.09 -0.53 5.14 -104.56 -0.54 -1.06 16 20 C -0.06 -0.23 9.66 -39.59 -0.38 -0.61 16 21 C -0.13 -0.54 10.02 -39.52 -0.40 -0.94 16 22 C 0.09 0.65 7.31 -39.38 -0.29 0.37 16 23 F -0.12 -0.96 17.18 2.25 0.04 -0.92 16 24 C 0.03 0.29 7.31 -39.31 -0.29 0.00 16 25 F -0.12 -1.19 17.10 2.25 0.04 -1.15 16 26 C 0.10 0.82 7.25 -39.38 -0.29 0.53 16 27 F -0.11 -1.08 16.57 2.25 0.04 -1.04 16 28 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.37 7.60 5.76 -40.82 -0.24 7.37 16 30 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.41 6.06 7.45 -40.82 -0.30 5.75 16 33 H 0.40 2.96 8.49 -40.82 -0.35 2.62 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.46 7.94 -51.92 -0.41 0.05 16 37 H 0.10 0.28 8.00 -51.93 -0.42 -0.14 16 38 H 0.16 0.14 8.04 -52.49 -0.42 -0.28 16 39 H 0.16 0.26 8.06 -52.49 -0.42 -0.16 16 LS Contribution 358.80 15.07 5.41 5.41 Total: -1.00 -34.45 358.80 -6.29 -40.74 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -3.80 Total: 12.14 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: -3.45 Total: 12.59 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.01 Total: -56.77 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: 0.17 Total: -25.13 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.11 Total: -3.12 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -4.71 Total: 14.15 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.45 -6.29 -40.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345933938.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.381 kcal (2) G-P(sol) polarization free energy of solvation -34.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds