Wall clock time and date at job start Wed Apr 1 2020 04:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99752 * 2 1 4 4 H 1.48498 * 109.47187 * 269.99694 * 3 2 1 5 5 H 1.48497 * 109.47444 * 29.99930 * 3 2 1 6 6 H 1.48506 * 109.46999 * 150.00228 * 3 2 1 7 7 C 1.38947 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99744 * 359.97438 * 7 2 1 9 9 N 1.37091 * 119.99916 * 180.02562 * 7 2 1 10 10 C 1.34781 * 120.00019 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99362 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00338 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47336 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00243 * 179.97438 * 13 12 10 15 15 O 1.21590 * 119.99814 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00239 * 179.97438 * 14 13 12 17 17 C 1.46495 * 119.99875 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47200 * 180.02562 * 17 16 14 19 19 C 1.50690 * 109.47663 * 180.02562 * 18 17 16 20 20 C 1.38255 * 119.97863 * 100.00033 * 19 18 17 21 21 C 1.38199 * 120.09097 * 179.72460 * 20 19 18 22 22 C 1.38448 * 120.04557 * 359.97438 * 21 20 19 23 23 F 1.35095 * 120.02611 * 180.02562 * 22 21 20 24 24 C 1.38582 * 119.95626 * 0.02562 * 22 21 20 25 25 F 1.35096 * 120.04458 * 179.97438 * 24 22 21 26 26 C 1.38412 * 119.97973 * 279.73013 * 19 18 17 27 27 F 1.35095 * 120.01859 * 0.27373 * 26 19 18 28 28 H 0.97002 * 119.99748 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00261 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.47102 * 60.00198 * 12 10 9 31 31 H 1.08996 * 109.47217 * 300.00084 * 12 10 9 32 32 H 0.96996 * 119.99922 * 0.02562 * 13 12 10 33 33 H 0.96996 * 119.99926 * 0.02562 * 16 14 13 34 34 H 1.09002 * 109.47077 * 60.01155 * 17 16 14 35 35 H 1.09002 * 109.47684 * 300.00133 * 17 16 14 36 36 H 1.09007 * 109.46674 * 59.99815 * 18 17 16 37 37 H 1.09005 * 109.47161 * 300.00683 * 18 17 16 38 38 H 1.07998 * 119.95068 * 359.74606 * 20 19 18 39 39 H 1.07999 * 119.98029 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2032 0.0000 10 6 4.0538 -2.3704 0.0000 11 8 3.4473 -3.4209 -0.0009 12 6 5.5608 -2.3705 0.0000 13 7 6.0491 -3.7516 0.0006 14 6 7.3742 -3.9979 0.0002 15 8 8.1643 -3.0737 -0.0002 16 7 7.8235 -5.2686 0.0013 17 6 9.2638 -5.5362 0.0014 18 6 9.5017 -7.0477 0.0021 19 6 10.9832 -7.3231 0.0028 20 6 11.6239 -7.6533 1.1826 21 6 12.9815 -7.9119 1.1850 22 6 13.7027 -7.8412 0.0053 23 9 15.0296 -8.0946 0.0080 24 6 13.0624 -7.5103 -1.1784 25 9 13.7645 -7.4403 -2.3304 26 6 11.7008 -7.2507 -1.1785 27 9 11.0743 -6.9279 -2.3311 28 1 -0.4850 0.8401 0.0004 29 1 3.8649 -0.3632 0.0004 30 1 5.9241 -1.8567 0.8900 31 1 5.9241 -1.8566 -0.8899 32 1 5.4188 -4.4889 0.0006 33 1 7.1932 -6.0059 0.0020 34 1 9.7149 -5.0968 0.8911 35 1 9.7149 -5.0982 -0.8890 36 1 9.0505 -7.4868 -0.8878 37 1 9.0505 -7.4861 0.8922 38 1 11.0625 -7.7096 2.1036 39 1 13.4802 -8.1694 2.1077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345933938.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:57 Heat of formation + Delta-G solvation = -198.321393 kcal Electronic energy + Delta-G solvation = -28104.336156 eV Core-core repulsion = 23210.678064 eV Total energy + Delta-G solvation = -4893.658092 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.85703 -50.26473 -49.56166 -41.23203 -40.26844 -39.97604 -36.64986 -36.20310 -35.26930 -33.83236 -33.51093 -31.62382 -30.04542 -28.64058 -26.24135 -24.74101 -24.32390 -22.66312 -21.96901 -21.44540 -20.57686 -19.61558 -19.36701 -19.06349 -18.34243 -17.92284 -17.53679 -17.33606 -17.06057 -16.87422 -16.69221 -16.54159 -16.08644 -16.05957 -15.87260 -15.60247 -15.49287 -15.35981 -15.20016 -14.96401 -14.84724 -14.29592 -13.97907 -13.82766 -13.59893 -13.48948 -13.02770 -12.95379 -12.67399 -12.51807 -12.43130 -12.28765 -11.99078 -11.56544 -11.44445 -10.63178 -10.42315 -10.30313 -10.01666 -9.86620 -9.80522 -8.44244 -6.06005 -0.38021 -0.32192 1.32378 1.35519 1.44804 1.58787 1.80862 2.08811 2.13679 2.21704 2.31436 2.80664 3.06063 3.12298 3.14904 3.22988 3.42949 3.54958 3.82678 3.96242 4.02950 4.08550 4.39576 4.43402 4.47179 4.48420 4.68219 4.75897 4.86282 4.91137 5.03325 5.16295 5.31267 5.46569 5.50853 5.56007 5.89919 5.97855 6.50377 6.79846 7.05098 7.30515 7.54679 7.79989 8.72065 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.031055 B = 0.001566 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.417293 B =17873.909528 C =18007.173225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.008 4.008 3 Si 0.958 3.042 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.232 1.232 7 C -0.331 4.331 8 H 0.064 0.936 9 N -0.579 5.579 10 C 0.446 3.554 11 O -0.613 6.613 12 C 0.138 3.862 13 N -0.726 5.726 14 C 0.705 3.295 15 O -0.632 6.632 16 N -0.731 5.731 17 C 0.143 3.857 18 C -0.084 4.084 19 C -0.093 4.093 20 C -0.045 4.045 21 C -0.116 4.116 22 C 0.082 3.918 23 F -0.131 7.131 24 C 0.005 3.995 25 F -0.137 7.137 26 C 0.083 3.917 27 F -0.131 7.131 28 H 0.281 0.719 29 H 0.392 0.608 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.411 0.589 33 H 0.414 0.586 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.091 0.909 37 H 0.130 0.870 38 H 0.196 0.804 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.506 -16.663 4.635 33.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.208 4.208 3 Si 0.778 3.222 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.155 1.155 7 C -0.460 4.460 8 H 0.082 0.918 9 N -0.219 5.219 10 C 0.234 3.766 11 O -0.499 6.499 12 C 0.009 3.991 13 N -0.384 5.384 14 C 0.404 3.596 15 O -0.514 6.514 16 N -0.387 5.387 17 C 0.019 3.981 18 C -0.121 4.121 19 C -0.094 4.094 20 C -0.063 4.063 21 C -0.135 4.135 22 C 0.062 3.938 23 F -0.109 7.109 24 C -0.016 4.016 25 F -0.116 7.116 26 C 0.063 3.937 27 F -0.109 7.109 28 H 0.090 0.910 29 H 0.228 0.772 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.249 0.751 33 H 0.251 0.749 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.148 0.852 38 H 0.213 0.787 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 28.664 -16.408 4.531 33.337 hybrid contribution -0.275 0.516 -1.106 1.251 sum 28.388 -15.892 3.425 32.713 Atomic orbital electron populations 1.69782 1.08010 1.29407 1.49374 1.26052 0.96416 1.02553 0.95767 0.85457 0.79629 0.77113 0.80008 1.18241 1.19885 1.15507 1.19030 0.80985 0.95263 1.50686 0.91761 1.41924 1.06111 1.07465 1.66351 1.20512 0.90055 0.83845 0.82205 1.90522 1.70797 1.32265 1.56347 1.20680 0.89150 0.84327 1.04909 1.44688 1.05618 1.08756 1.79313 1.15925 0.81847 0.84077 0.77731 1.90894 1.55834 1.44647 1.60029 1.44850 1.08738 1.05388 1.79764 1.21166 0.79221 0.95712 1.01999 1.20753 0.90027 0.94235 1.07062 1.19894 0.97036 1.01482 0.91037 1.21439 0.93129 0.93406 0.98289 1.21602 0.94813 1.00101 0.96956 1.17733 0.78619 1.03948 0.93505 1.91544 1.30650 1.91612 1.97126 1.17955 0.89793 1.11071 0.82800 1.91507 1.78434 1.94475 1.47194 1.17561 0.88415 1.03943 0.83783 1.91539 1.81824 1.90088 1.47480 0.90965 0.77246 0.87996 0.88252 0.75111 0.74933 0.90885 0.93721 0.89042 0.85192 0.78705 0.79506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.95 13.96 21.66 0.30 -53.65 16 2 C -0.01 -0.42 5.50 84.92 0.47 0.04 16 3 Si 0.96 37.76 27.74 68.60 1.90 39.66 16 4 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.23 -7.76 6.52 99.48 0.65 -7.12 16 7 C -0.33 -18.53 10.16 84.04 0.85 -17.67 16 8 H 0.06 4.25 7.39 -2.91 -0.02 4.23 16 9 N -0.58 -26.13 5.09 -306.99 -1.56 -27.70 16 10 C 0.45 18.95 7.85 87.65 0.69 19.64 16 11 O -0.61 -30.67 15.24 -3.08 -0.05 -30.72 16 12 C 0.14 4.40 6.15 85.63 0.53 4.93 16 13 N -0.73 -20.99 5.53 -482.31 -2.67 -23.66 16 14 C 0.70 19.50 8.57 179.05 1.53 21.03 16 15 O -0.63 -22.11 16.34 -4.00 -0.07 -22.18 16 16 N -0.73 -13.10 5.56 -478.53 -2.66 -15.76 16 17 C 0.14 2.14 5.65 86.38 0.49 2.62 16 18 C -0.08 -0.59 5.18 29.85 0.15 -0.43 16 19 C -0.09 -0.81 5.14 -19.82 -0.10 -0.91 16 20 C -0.04 -0.13 9.66 22.26 0.22 0.08 16 21 C -0.12 -0.57 10.02 22.31 0.22 -0.35 16 22 C 0.08 1.06 7.31 22.40 0.16 1.23 16 23 F -0.13 -2.07 17.18 44.97 0.77 -1.29 16 24 C 0.00 0.08 7.31 22.44 0.16 0.25 16 25 F -0.14 -3.06 17.10 44.97 0.77 -2.29 16 26 C 0.08 1.30 7.25 22.40 0.16 1.46 16 27 F -0.13 -2.62 16.57 44.97 0.75 -1.88 16 28 H 0.28 14.97 8.31 -92.71 -0.77 14.20 16 29 H 0.39 14.88 5.76 -92.71 -0.53 14.34 16 30 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 31 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 32 H 0.41 11.58 7.45 -92.71 -0.69 10.89 16 33 H 0.41 4.98 8.49 -92.71 -0.79 4.19 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 0.70 7.94 -2.38 -0.02 0.68 16 37 H 0.13 0.08 8.00 -2.38 -0.02 0.06 16 38 H 0.20 -0.90 8.04 -2.91 -0.02 -0.93 16 39 H 0.19 -0.24 8.06 -2.91 -0.02 -0.26 16 Total: -1.00 -80.66 358.80 2.12 -78.53 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: -0.90 Total: 29.03 kcal Atomic # 6 Polarization: 26.37 SS G_CDS: 5.54 Total: 31.91 kcal Atomic # 7 Polarization: -114.18 SS G_CDS: -6.59 Total: -120.77 kcal Atomic # 8 Polarization: -52.78 SS G_CDS: -0.11 Total: -52.90 kcal Atomic # 9 Polarization: -7.75 SS G_CDS: 2.29 Total: -5.46 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 1.90 Total: 39.66 kcal Total: -80.66 2.12 -78.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345933938.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.789 kcal (2) G-P(sol) polarization free energy of solvation -80.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds