Wall clock time and date at job start Wed Apr 1 2020 04:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 119.99874 * 2 1 4 4 S 1.65595 * 119.99850 * 180.02562 * 2 1 3 5 5 O 1.42105 * 106.40149 * 203.53728 * 4 2 1 6 6 O 1.42098 * 106.40317 * 336.45602 * 4 2 1 7 7 C 1.76204 * 107.21987 * 89.99964 * 4 2 1 8 8 C 1.38142 * 119.97778 * 114.72184 * 7 4 2 9 9 C 1.38854 * 119.94552 * 179.78745 * 8 7 4 10 10 N 1.39828 * 120.04475 * 180.23197 * 9 8 7 11 11 C 1.46496 * 119.99823 * 180.27601 * 10 9 8 12 12 C 1.50703 * 109.47022 * 180.02562 * 11 10 9 13 13 O 1.21293 * 119.99987 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99850 * 179.97438 * 12 11 10 15 15 C 1.37101 * 119.99888 * 180.02562 * 14 12 11 16 16 H 1.07998 * 119.99866 * 359.97438 * 15 14 12 17 17 C 1.38946 * 120.00009 * 180.02562 * 15 14 12 18 18 N 1.31416 * 120.00015 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00212 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47335 * 89.99258 * 19 17 15 21 21 H 1.48494 * 109.47543 * 209.99909 * 19 17 15 22 22 H 1.48503 * 109.46869 * 329.99707 * 19 17 15 23 23 C 1.38899 * 119.90633 * 0.50915 * 9 8 7 24 24 C 1.38099 * 119.94700 * 359.72331 * 23 9 8 25 25 C 1.38449 * 119.96938 * 294.99378 * 7 4 2 26 26 F 1.35093 * 119.95475 * 359.97438 * 25 7 4 27 27 H 1.09003 * 109.46977 * 239.99944 * 1 2 3 28 28 H 1.09005 * 109.47477 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47852 * 120.00285 * 1 2 3 30 30 H 1.09009 * 109.46956 * 270.00331 * 3 2 1 31 31 H 1.08994 * 109.47112 * 30.00030 * 3 2 1 32 32 H 1.09001 * 109.47155 * 150.00738 * 3 2 1 33 33 H 1.07998 * 120.02265 * 0.02562 * 8 7 4 34 34 H 0.96995 * 120.00056 * 0.27656 * 10 9 8 35 35 H 1.09000 * 109.47015 * 300.00194 * 11 10 9 36 36 H 1.09001 * 109.47197 * 60.00566 * 11 10 9 37 37 H 0.97005 * 120.00376 * 0.02562 * 14 12 11 38 38 H 0.96999 * 119.99561 * 179.97438 * 18 17 15 39 39 H 1.07993 * 120.02548 * 179.69508 * 23 9 8 40 40 H 1.08003 * 119.97353 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 16 2.2929 -1.4341 -0.0006 5 8 3.5759 -1.1570 0.5439 6 8 1.4113 -2.4067 0.5434 7 6 2.5537 -1.8851 -1.6839 8 6 3.8362 -1.9324 -2.1951 9 6 4.0413 -2.2922 -3.5204 10 7 5.3389 -2.3454 -4.0387 11 6 5.5536 -2.7192 -5.4388 12 6 7.0296 -2.7011 -5.7428 13 8 7.8239 -2.4047 -4.8754 14 7 7.4669 -3.0144 -6.9785 15 6 8.8097 -2.9985 -7.2550 16 1 9.5169 -2.7345 -6.4826 17 6 9.2605 -3.3210 -8.5291 18 7 8.3999 -3.6417 -9.4690 19 14 11.0901 -3.3000 -8.9056 20 1 11.6672 -4.6405 -8.6319 21 1 11.2975 -2.9541 -10.3348 22 1 11.7600 -2.2884 -8.0493 23 6 2.9552 -2.5935 -4.3322 24 6 1.6746 -2.5403 -3.8182 25 6 1.4726 -2.1864 -2.4947 26 9 0.2189 -2.1347 -1.9940 27 1 -0.3633 -0.5139 0.8900 28 1 -0.3634 1.0277 0.0005 29 1 -0.3635 -0.5138 -0.8899 30 1 2.3791 1.5834 -1.0278 31 1 1.6084 2.0283 0.5138 32 1 3.1499 1.1384 0.5137 33 1 4.6789 -1.6934 -1.5633 34 1 6.0968 -2.1348 -3.4712 35 1 5.1596 -3.7206 -5.6120 36 1 5.0401 -2.0094 -6.0873 37 1 6.8317 -3.2512 -7.6724 38 1 8.7147 -3.8664 -10.3586 39 1 3.1122 -2.8688 -5.3646 40 1 0.8298 -2.7741 -4.4492 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349788722.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:46 Heat of formation + Delta-G solvation = -112.850530 kcal Electronic energy + Delta-G solvation = -27536.260712 eV Core-core repulsion = 23200.149301 eV Total energy + Delta-G solvation = -4336.111410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.099 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.21031 -39.65679 -38.37225 -37.41695 -36.43664 -36.01944 -35.18899 -34.05760 -31.65489 -31.47536 -29.71250 -28.38914 -26.78785 -25.01563 -24.67180 -23.57661 -22.29165 -19.67812 -19.21959 -18.57769 -18.20857 -17.68019 -17.49885 -16.90177 -16.50745 -16.09341 -15.84260 -15.30891 -15.00723 -14.95437 -14.66478 -14.57872 -14.43749 -14.20187 -13.89666 -13.52377 -13.19953 -13.19038 -13.04269 -12.86827 -12.51421 -12.41613 -12.23133 -12.15277 -12.02523 -11.88994 -11.78719 -11.69814 -11.20474 -10.89524 -10.52855 -10.39684 -10.21693 -9.72553 -9.63256 -9.39908 -8.75575 -8.20587 -7.46804 -6.61236 -4.03304 0.09936 0.57346 1.12938 2.64435 3.05118 3.16462 3.20410 3.27755 3.32450 3.51651 3.62020 3.93954 4.03696 4.17167 4.45240 4.52411 4.70188 4.84312 5.01676 5.06287 5.08849 5.10950 5.20429 5.31036 5.43807 5.47437 5.51546 5.56062 5.61042 5.69247 5.69547 5.87914 5.92900 5.99496 6.18131 6.44968 7.16891 7.37446 7.75604 7.85408 8.34373 8.95389 9.27797 9.75595 10.55547 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.025329 B = 0.002147 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.165352 B =13040.792103 C =13628.260017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.003 6.003 3 C 0.082 3.918 4 S 2.697 3.303 5 O -0.951 6.951 6 O -0.946 6.946 7 C -0.660 4.660 8 C -0.079 4.079 9 C 0.207 3.793 10 N -0.718 5.718 11 C 0.108 3.892 12 C 0.427 3.573 13 O -0.593 6.593 14 N -0.548 5.548 15 C -0.306 4.306 16 H 0.106 0.894 17 C 0.027 3.973 18 N -0.895 5.895 19 Si 0.934 3.066 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.268 1.268 23 C -0.127 4.127 24 C -0.114 4.114 25 C 0.114 3.886 26 F -0.132 7.132 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.151 0.849 34 H 0.416 0.584 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.395 0.605 38 H 0.275 0.725 39 H 0.142 0.858 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.150 7.097 12.006 22.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.843 5.843 3 C -0.063 4.063 4 S 2.785 3.215 5 O -0.941 6.941 6 O -0.936 6.936 7 C -0.747 4.747 8 C -0.103 4.103 9 C 0.099 3.901 10 N -0.348 5.348 11 C -0.020 4.020 12 C 0.212 3.788 13 O -0.479 6.479 14 N -0.183 5.183 15 C -0.435 4.435 16 H 0.124 0.876 17 C -0.176 4.176 18 N -0.535 5.535 19 Si 0.760 3.240 20 H -0.202 1.202 21 H -0.207 1.207 22 H -0.193 1.193 23 C -0.151 4.151 24 C -0.134 4.134 25 C 0.091 3.909 26 F -0.111 7.111 27 H 0.086 0.914 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.169 0.831 34 H 0.256 0.744 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.229 0.771 38 H 0.085 0.915 39 H 0.159 0.841 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.300 6.750 12.871 22.595 hybrid contribution 0.459 -0.034 -1.460 1.531 sum -16.841 6.715 11.412 21.423 Atomic orbital electron populations 1.21759 0.77736 1.03757 1.03046 1.57263 1.15545 1.21618 1.89888 1.21687 0.97450 0.84722 1.02435 1.01969 0.73135 0.72590 0.73772 1.93576 1.40056 1.84393 1.76079 1.93604 1.65827 1.58187 1.75981 1.30640 0.98695 1.18999 1.26347 1.20227 0.95134 1.00606 0.94378 1.17930 0.85927 0.94133 0.92115 1.44615 1.04506 1.73942 1.11710 1.21041 0.97108 1.00832 0.83007 1.19638 0.88856 0.85936 0.84351 1.90524 1.56021 1.54903 1.46474 1.41796 1.08800 1.58388 1.09338 1.19734 0.82603 1.44276 0.96882 0.87647 1.25328 1.00631 0.96476 0.95205 1.69604 1.34918 1.45330 1.03662 0.85801 0.81607 0.78919 0.77671 1.20188 1.20739 1.19265 1.20872 0.90681 1.02943 1.00561 1.20937 0.98187 1.00784 0.93476 1.16658 0.77921 1.03730 0.92582 1.91468 1.38096 1.93976 1.87567 0.91414 0.90146 0.91131 0.92459 0.90386 0.89675 0.83134 0.74428 0.90302 0.90313 0.77124 0.91523 0.84054 0.83995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 10.19 59.85 0.61 1.23 16 2 N -1.00 -9.33 3.58 -129.20 -0.46 -9.79 16 3 C 0.08 0.59 10.63 59.85 0.64 1.22 16 4 S 2.70 33.53 5.34 -107.50 -0.57 32.95 16 5 O -0.95 -13.48 15.57 -57.17 -0.89 -14.37 16 6 O -0.95 -14.03 16.58 -57.17 -0.95 -14.98 16 7 C -0.66 -8.34 5.91 -39.54 -0.23 -8.57 16 8 C -0.08 -1.04 9.40 -39.39 -0.37 -1.41 16 9 C 0.21 2.76 6.65 -83.74 -0.56 2.20 16 10 N -0.72 -10.79 5.71 -59.78 -0.34 -11.13 16 11 C 0.11 1.69 5.39 -5.19 -0.03 1.66 16 12 C 0.43 9.19 7.85 -10.98 -0.09 9.11 16 13 O -0.59 -14.83 15.24 5.55 0.08 -14.75 16 14 N -0.55 -12.85 5.29 -10.96 -0.06 -12.91 16 15 C -0.31 -8.04 9.68 -14.93 -0.14 -8.18 16 16 H 0.11 2.92 7.16 -52.49 -0.38 2.55 16 17 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 18 N -0.90 -23.00 13.05 55.50 0.72 -22.28 16 19 Si 0.93 20.04 29.55 -169.99 -5.02 15.01 16 20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 C -0.13 -1.46 9.31 -39.39 -0.37 -1.82 16 24 C -0.11 -1.22 10.02 -39.54 -0.40 -1.62 16 25 C 0.11 1.38 7.21 -39.41 -0.28 1.10 16 26 F -0.13 -1.55 13.70 2.25 0.03 -1.51 16 27 H 0.07 0.51 8.01 -51.93 -0.42 0.09 16 28 H 0.08 0.39 7.79 -51.93 -0.40 -0.02 16 29 H 0.07 0.55 5.55 -51.93 -0.29 0.26 16 30 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.08 0.37 7.92 -51.93 -0.41 -0.04 16 32 H 0.08 0.65 7.02 -51.93 -0.36 0.29 16 33 H 0.15 1.87 7.33 -52.49 -0.38 1.49 16 34 H 0.42 6.76 7.45 -40.82 -0.30 6.45 16 35 H 0.08 1.08 7.95 -51.93 -0.41 0.67 16 36 H 0.08 1.07 7.95 -51.93 -0.41 0.65 16 37 H 0.40 8.72 7.90 -40.82 -0.32 8.40 16 38 H 0.27 6.68 8.31 -40.82 -0.34 6.35 16 39 H 0.14 1.37 6.73 -52.49 -0.35 1.01 16 40 H 0.14 1.14 8.06 -52.48 -0.42 0.71 16 LS Contribution 355.95 15.07 5.36 5.36 Total: -1.00 -32.62 355.95 -7.84 -40.47 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -4.43 Total: 12.43 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -1.32 Total: -4.52 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.14 Total: -56.10 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -1.75 Total: -44.09 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.03 Total: -1.51 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 33.53 SS G_CDS: -0.57 Total: 32.95 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.62 -7.84 -40.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349788722.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.384 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds