Wall clock time and date at job start Wed Apr 1 2020 04:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 119.99874 * 2 1 4 4 S 1.65595 * 119.99850 * 180.02562 * 2 1 3 5 5 O 1.42105 * 106.40149 * 203.53728 * 4 2 1 6 6 O 1.42098 * 106.40317 * 336.45602 * 4 2 1 7 7 C 1.76204 * 107.21987 * 89.99964 * 4 2 1 8 8 C 1.38142 * 119.97778 * 114.72184 * 7 4 2 9 9 C 1.38854 * 119.94552 * 179.78745 * 8 7 4 10 10 N 1.39828 * 120.04475 * 180.23197 * 9 8 7 11 11 C 1.46496 * 119.99823 * 180.27601 * 10 9 8 12 12 C 1.50703 * 109.47022 * 180.02562 * 11 10 9 13 13 O 1.21293 * 119.99987 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99850 * 179.97438 * 12 11 10 15 15 C 1.37101 * 119.99888 * 180.02562 * 14 12 11 16 16 H 1.07998 * 119.99866 * 359.97438 * 15 14 12 17 17 C 1.38946 * 120.00009 * 180.02562 * 15 14 12 18 18 N 1.31416 * 120.00015 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00212 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47335 * 89.99258 * 19 17 15 21 21 H 1.48494 * 109.47543 * 209.99909 * 19 17 15 22 22 H 1.48503 * 109.46869 * 329.99707 * 19 17 15 23 23 C 1.38899 * 119.90633 * 0.50915 * 9 8 7 24 24 C 1.38099 * 119.94700 * 359.72331 * 23 9 8 25 25 C 1.38449 * 119.96938 * 294.99378 * 7 4 2 26 26 F 1.35093 * 119.95475 * 359.97438 * 25 7 4 27 27 H 1.09003 * 109.46977 * 239.99944 * 1 2 3 28 28 H 1.09005 * 109.47477 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47852 * 120.00285 * 1 2 3 30 30 H 1.09009 * 109.46956 * 270.00331 * 3 2 1 31 31 H 1.08994 * 109.47112 * 30.00030 * 3 2 1 32 32 H 1.09001 * 109.47155 * 150.00738 * 3 2 1 33 33 H 1.07998 * 120.02265 * 0.02562 * 8 7 4 34 34 H 0.96995 * 120.00056 * 0.27656 * 10 9 8 35 35 H 1.09000 * 109.47015 * 300.00194 * 11 10 9 36 36 H 1.09001 * 109.47197 * 60.00566 * 11 10 9 37 37 H 0.97005 * 120.00376 * 0.02562 * 14 12 11 38 38 H 0.96999 * 119.99561 * 179.97438 * 18 17 15 39 39 H 1.07993 * 120.02548 * 179.69508 * 23 9 8 40 40 H 1.08003 * 119.97353 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 16 2.2929 -1.4341 -0.0006 5 8 3.5759 -1.1570 0.5439 6 8 1.4113 -2.4067 0.5434 7 6 2.5537 -1.8851 -1.6839 8 6 3.8362 -1.9324 -2.1951 9 6 4.0413 -2.2922 -3.5204 10 7 5.3389 -2.3454 -4.0387 11 6 5.5536 -2.7192 -5.4388 12 6 7.0296 -2.7011 -5.7428 13 8 7.8239 -2.4047 -4.8754 14 7 7.4669 -3.0144 -6.9785 15 6 8.8097 -2.9985 -7.2550 16 1 9.5169 -2.7345 -6.4826 17 6 9.2605 -3.3210 -8.5291 18 7 8.3999 -3.6417 -9.4690 19 14 11.0901 -3.3000 -8.9056 20 1 11.6672 -4.6405 -8.6319 21 1 11.2975 -2.9541 -10.3348 22 1 11.7600 -2.2884 -8.0493 23 6 2.9552 -2.5935 -4.3322 24 6 1.6746 -2.5403 -3.8182 25 6 1.4726 -2.1864 -2.4947 26 9 0.2189 -2.1347 -1.9940 27 1 -0.3633 -0.5139 0.8900 28 1 -0.3634 1.0277 0.0005 29 1 -0.3635 -0.5138 -0.8899 30 1 2.3791 1.5834 -1.0278 31 1 1.6084 2.0283 0.5138 32 1 3.1499 1.1384 0.5137 33 1 4.6789 -1.6934 -1.5633 34 1 6.0968 -2.1348 -3.4712 35 1 5.1596 -3.7206 -5.6120 36 1 5.0401 -2.0094 -6.0873 37 1 6.8317 -3.2512 -7.6724 38 1 8.7147 -3.8664 -10.3586 39 1 3.1122 -2.8688 -5.3646 40 1 0.8298 -2.7741 -4.4492 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349788722.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:45 Heat of formation + Delta-G solvation = -138.036080 kcal Electronic energy + Delta-G solvation = -27537.352839 eV Core-core repulsion = 23200.149301 eV Total energy + Delta-G solvation = -4337.203538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.099 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.13598 -40.80138 -39.93688 -38.46550 -37.18300 -37.01778 -36.50922 -35.78153 -33.39246 -32.54330 -30.87764 -28.97201 -28.15704 -26.27953 -25.69763 -24.60415 -23.29177 -21.31402 -20.18640 -20.05987 -19.49741 -18.62245 -18.55949 -17.96665 -17.70561 -17.06163 -16.81294 -16.76102 -16.36843 -16.22741 -16.05948 -15.44144 -15.43149 -15.38714 -15.08595 -14.59111 -14.39912 -14.16002 -13.96191 -13.89684 -13.65891 -13.54323 -13.42589 -13.29988 -13.17374 -13.08702 -12.93229 -12.61638 -12.52227 -12.47361 -12.14706 -11.83473 -11.59143 -11.24832 -10.56133 -10.53209 -10.10369 -10.09439 -8.52957 -8.52094 -6.02149 -0.82908 -0.38152 0.18691 1.34956 1.41937 1.53277 1.80147 1.91657 2.10604 2.32630 2.34416 2.56377 3.00986 3.12532 3.14904 3.24702 3.63504 3.83072 3.94605 4.11557 4.16766 4.27764 4.39608 4.46829 4.52540 4.55676 4.64635 4.71492 4.75630 4.94453 4.97483 4.99756 5.01882 5.03604 5.36888 5.50399 5.53016 5.87706 6.14058 6.49221 6.57330 7.04109 7.44387 7.96917 8.63631 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.025329 B = 0.002147 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.165352 B =13040.792103 C =13628.260017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.998 5.998 3 C 0.074 3.926 4 S 2.704 3.296 5 O -0.976 6.976 6 O -0.975 6.975 7 C -0.667 4.667 8 C -0.092 4.092 9 C 0.194 3.806 10 N -0.730 5.730 11 C 0.123 3.877 12 C 0.428 3.572 13 O -0.631 6.631 14 N -0.559 5.559 15 C -0.337 4.337 16 H 0.080 0.920 17 C -0.007 4.007 18 N -0.913 5.913 19 Si 0.991 3.009 20 H -0.271 1.271 21 H -0.270 1.270 22 H -0.273 1.273 23 C -0.120 4.120 24 C -0.107 4.107 25 C 0.109 3.891 26 F -0.130 7.130 27 H 0.064 0.936 28 H 0.113 0.887 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.146 0.854 34 H 0.407 0.593 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.401 0.599 38 H 0.280 0.720 39 H 0.166 0.834 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.936 7.601 10.985 23.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.840 5.840 3 C -0.071 4.071 4 S 2.793 3.207 5 O -0.966 6.966 6 O -0.965 6.965 7 C -0.754 4.754 8 C -0.116 4.116 9 C 0.088 3.912 10 N -0.360 5.360 11 C -0.005 4.005 12 C 0.215 3.785 13 O -0.520 6.520 14 N -0.195 5.195 15 C -0.467 4.467 16 H 0.098 0.902 17 C -0.208 4.208 18 N -0.553 5.553 19 Si 0.815 3.185 20 H -0.197 1.197 21 H -0.195 1.195 22 H -0.198 1.198 23 C -0.143 4.143 24 C -0.126 4.126 25 C 0.086 3.914 26 F -0.109 7.109 27 H 0.083 0.917 28 H 0.131 0.869 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.093 0.907 33 H 0.164 0.836 34 H 0.245 0.755 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.236 0.764 38 H 0.090 0.910 39 H 0.183 0.817 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -19.138 7.248 11.852 23.649 hybrid contribution 0.892 -0.133 -1.061 1.393 sum -18.245 7.114 10.791 22.360 Atomic orbital electron populations 1.21982 0.76416 1.05870 1.02825 1.57090 1.16298 1.21056 1.89557 1.21927 0.97460 0.84258 1.03434 1.01509 0.72515 0.72968 0.73686 1.93537 1.41429 1.84862 1.76808 1.93559 1.66324 1.59864 1.76785 1.30613 0.98825 1.19589 1.26406 1.20245 0.95311 1.01348 0.94693 1.18055 0.85651 0.95105 0.92421 1.44566 1.04955 1.75156 1.11301 1.20975 0.92390 1.03205 0.83907 1.20670 0.91355 0.83375 0.83066 1.90502 1.58127 1.55837 1.47488 1.41820 1.08040 1.59349 1.10296 1.19657 0.83836 1.46172 0.97011 0.90163 1.26020 1.04378 0.95736 0.94674 1.69649 1.36274 1.45442 1.03942 0.84947 0.77029 0.78769 0.77751 1.19696 1.19470 1.19811 1.21185 0.90197 1.01565 1.01372 1.21294 0.98996 0.99285 0.93055 1.16901 0.77820 1.03426 0.93229 1.91480 1.37827 1.93916 1.87653 0.91679 0.86877 0.91403 0.91508 0.87423 0.90679 0.83603 0.75521 0.87725 0.87469 0.76411 0.91048 0.81671 0.80689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.97 10.19 127.77 1.30 2.27 16 2 N -1.00 -17.41 3.58 -562.69 -2.02 -19.43 16 3 C 0.07 0.94 10.63 127.77 1.36 2.29 16 4 S 2.70 67.40 5.34 -56.49 -0.30 67.09 16 5 O -0.98 -28.50 15.57 -128.00 -1.99 -30.49 16 6 O -0.98 -29.17 16.58 -128.00 -2.12 -31.29 16 7 C -0.67 -16.45 5.91 22.30 0.13 -16.31 16 8 C -0.09 -2.39 9.40 22.39 0.21 -2.18 16 9 C 0.19 4.89 6.65 38.17 0.25 5.15 16 10 N -0.73 -21.26 5.71 -343.06 -1.96 -23.22 16 11 C 0.12 3.59 5.39 85.63 0.46 4.05 16 12 C 0.43 18.40 7.85 87.66 0.69 19.09 16 13 O -0.63 -32.29 15.24 -3.07 -0.05 -32.34 16 14 N -0.56 -26.29 5.29 -306.98 -1.62 -27.91 16 15 C -0.34 -18.05 9.68 84.04 0.81 -17.24 16 16 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 17 C -0.01 -0.36 5.50 84.92 0.47 0.11 16 18 N -0.91 -46.39 13.05 21.66 0.28 -46.11 16 19 Si 0.99 40.91 29.55 68.60 2.03 42.94 16 20 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 21 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 C -0.12 -2.38 9.31 22.40 0.21 -2.18 16 24 C -0.11 -1.94 10.02 22.30 0.22 -1.72 16 25 C 0.11 2.44 7.21 22.38 0.16 2.60 16 26 F -0.13 -2.80 13.70 44.97 0.62 -2.19 16 27 H 0.06 0.90 8.01 -2.39 -0.02 0.88 16 28 H 0.11 0.74 7.79 -2.38 -0.02 0.72 16 29 H 0.07 0.94 5.55 -2.39 -0.01 0.93 16 30 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.11 0.74 7.92 -2.39 -0.02 0.72 16 32 H 0.07 1.12 7.02 -2.39 -0.02 1.10 16 33 H 0.15 3.80 7.33 -2.91 -0.02 3.78 16 34 H 0.41 13.42 7.45 -92.71 -0.69 12.73 16 35 H 0.11 2.56 7.95 -2.39 -0.02 2.54 16 36 H 0.11 2.56 7.95 -2.39 -0.02 2.54 16 37 H 0.40 17.53 7.90 -92.70 -0.73 16.79 16 38 H 0.28 13.34 8.31 -92.71 -0.77 12.57 16 39 H 0.17 2.46 6.73 -2.91 -0.02 2.44 16 40 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -71.61 355.95 -1.16 -72.77 By element: Atomic # 1 Polarization: 34.55 SS G_CDS: -0.30 Total: 34.25 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 6.28 Total: -4.07 kcal Atomic # 7 Polarization: -111.36 SS G_CDS: -5.32 Total: -116.67 kcal Atomic # 8 Polarization: -89.96 SS G_CDS: -4.16 Total: -94.13 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.62 Total: -2.19 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Atomic # 16 Polarization: 67.40 SS G_CDS: -0.30 Total: 67.09 kcal Total: -71.61 -1.16 -72.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349788722.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.270 kcal (2) G-P(sol) polarization free energy of solvation -71.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds