Wall clock time and date at job start Wed Apr 1 2020 04:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 116.99755 * 2 1 4 4 O 1.20828 * 120.00013 * 0.02562 * 3 2 1 5 5 C 1.50691 * 120.00190 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.45242 * 59.96221 * 5 3 2 7 7 C 1.53046 * 109.46044 * 300.00184 * 5 3 2 8 8 C 1.53188 * 109.31610 * 178.61162 * 7 5 3 9 9 N 1.46926 * 108.77396 * 54.63723 * 8 7 5 10 10 C 1.34777 * 120.63461 * 126.37159 * 9 8 7 11 11 O 1.21281 * 120.00066 * 184.11315 * 10 9 8 12 12 C 1.50697 * 119.99573 * 4.10896 * 10 9 8 13 13 S 1.81008 * 109.46938 * 180.02562 * 12 10 9 14 14 C 1.76198 * 100.00005 * 179.97438 * 13 12 10 15 15 H 1.08005 * 120.00003 * 0.02562 * 14 13 12 16 16 C 1.38797 * 120.00309 * 180.02562 * 14 13 12 17 17 N 1.31626 * 120.00233 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99729 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46942 * 90.00301 * 18 16 14 20 20 H 1.48494 * 109.47113 * 210.00338 * 18 16 14 21 21 H 1.48503 * 109.47121 * 330.00273 * 18 16 14 22 22 C 1.46934 * 118.73559 * 306.39054 * 9 8 7 23 23 H 1.09002 * 109.58832 * 293.67680 * 22 9 8 24 24 C 1.50709 * 109.58243 * 173.39858 * 22 9 8 25 25 O 1.20822 * 119.99815 * 293.25410 * 24 22 9 26 26 O 1.34223 * 119.99752 * 113.53527 * 24 22 9 27 27 C 1.45200 * 116.99839 * 179.72146 * 26 24 22 28 28 C 1.53034 * 109.46399 * 179.97438 * 5 3 2 29 29 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47010 * 299.99807 * 1 2 3 31 31 H 1.08990 * 109.47284 * 59.99888 * 1 2 3 32 32 H 1.09004 * 109.49637 * 58.65765 * 7 5 3 33 33 H 1.08998 * 109.49546 * 298.56632 * 7 5 3 34 34 H 1.08999 * 109.59011 * 294.84864 * 8 7 5 35 35 H 1.09006 * 109.70723 * 174.49196 * 8 7 5 36 36 H 1.09000 * 109.47264 * 300.00137 * 12 10 9 37 37 H 1.08998 * 109.47463 * 60.00199 * 12 10 9 38 38 H 0.97008 * 119.99725 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.47310 * 179.97438 * 27 26 24 40 40 H 1.09003 * 109.47378 * 299.99760 * 27 26 24 41 41 H 1.09002 * 109.47140 * 59.99966 * 27 26 24 42 42 H 1.09000 * 109.50161 * 61.42794 * 28 5 3 43 43 H 1.09005 * 109.49820 * 301.33635 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9553 0.7804 -0.8906 7 6 4.1137 0.5809 1.2487 8 6 5.6446 0.6328 1.2274 9 7 6.0683 2.0318 1.0798 10 6 6.9346 2.5828 1.9531 11 8 7.2191 3.7584 1.8650 12 6 7.5494 1.7379 3.0390 13 16 8.6596 2.7577 4.0410 14 6 9.2214 1.5528 5.1974 15 1 8.8640 0.5356 5.1341 16 6 10.1232 1.9109 6.1899 17 7 10.5433 1.0107 7.0534 18 14 10.7419 3.6701 6.2991 19 1 9.8417 4.4577 7.1792 20 1 12.1158 3.6776 6.8625 21 1 10.7601 4.2736 4.9423 22 6 5.5294 2.8191 -0.0376 23 1 5.8958 2.4134 -0.9807 24 6 5.9669 4.2548 0.0986 25 8 5.5570 4.9268 1.0152 26 8 6.8074 4.7885 -0.8015 27 6 7.1813 6.1786 -0.6111 28 6 3.9998 2.7426 -0.0011 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 3.7850 -0.4583 1.2611 33 1 3.7448 1.0902 2.1390 34 1 6.0184 0.0472 0.3875 35 1 6.0391 0.2279 2.1594 36 1 6.7614 1.3296 3.6718 37 1 8.1134 0.9212 2.5885 38 1 11.1739 1.2610 7.7468 39 1 7.8627 6.4836 -1.4054 40 1 6.2878 6.8023 -0.6390 41 1 7.6745 6.2932 0.3541 42 1 3.6320 3.2311 0.9013 43 1 3.5901 3.2428 -0.8787 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356042434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:20 Heat of formation + Delta-G solvation = -192.194995 kcal Electronic energy + Delta-G solvation = -28950.663334 eV Core-core repulsion = 24702.278844 eV Total energy + Delta-G solvation = -4248.384491 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.117 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.44667 -40.65534 -39.18046 -37.62829 -36.71480 -36.09958 -33.49965 -32.46374 -32.25445 -29.42191 -28.38930 -27.85725 -26.16960 -25.61911 -24.31505 -22.57584 -21.47999 -20.70544 -19.27854 -18.26320 -17.82804 -17.46624 -17.09309 -16.83571 -16.57993 -16.40969 -15.96973 -15.48370 -15.32801 -14.98633 -14.61625 -14.24644 -14.14271 -13.87846 -13.64420 -13.35846 -13.20251 -13.00121 -12.81727 -12.79628 -12.73158 -12.39077 -12.08959 -11.98861 -11.67950 -11.41874 -11.30217 -11.25553 -11.16624 -11.02778 -10.75342 -10.65240 -10.54917 -10.13570 -9.87837 -9.42426 -9.02836 -8.89901 -8.52465 -6.95210 -6.31473 -4.03498 1.81257 2.11133 2.23628 2.67776 2.74739 2.89142 3.16855 3.32321 3.48913 3.54327 4.05250 4.20559 4.30757 4.35132 4.42075 4.59159 4.70311 4.74120 4.78117 4.81295 4.88940 4.94357 5.07550 5.09362 5.13733 5.19513 5.25694 5.26192 5.32812 5.39001 5.49290 5.66017 5.67799 5.71195 5.83844 5.89929 6.00132 6.19250 6.63485 7.15863 7.35630 7.91437 8.00158 8.26340 8.38362 9.14844 10.77650 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.012448 B = 0.003263 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.830179 B = 8579.267084 C =10325.250475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.467 3.533 4 O -0.501 6.501 5 C -0.075 4.075 6 H 0.118 0.882 7 C -0.131 4.131 8 C 0.113 3.887 9 N -0.613 5.613 10 C 0.530 3.470 11 O -0.488 6.488 12 C -0.118 4.118 13 S -0.139 6.139 14 C -0.521 4.521 15 H 0.089 0.911 16 C 0.097 3.903 17 N -0.880 5.880 18 Si 0.856 3.144 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.236 1.236 22 C 0.161 3.839 23 H 0.104 0.896 24 C 0.477 3.523 25 O -0.482 6.482 26 O -0.363 6.363 27 C 0.044 3.956 28 C -0.110 4.110 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.271 0.729 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.295 -3.260 -19.704 25.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.309 3.691 4 O -0.388 6.388 5 C -0.094 4.094 6 H 0.135 0.865 7 C -0.169 4.169 8 C -0.009 4.009 9 N -0.353 5.353 10 C 0.318 3.682 11 O -0.362 6.362 12 C -0.268 4.268 13 S 0.087 5.913 14 C -0.669 4.669 15 H 0.107 0.893 16 C -0.112 4.112 17 N -0.516 5.516 18 Si 0.681 3.319 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.160 1.160 22 C 0.056 3.944 23 H 0.122 0.878 24 C 0.318 3.682 25 O -0.367 6.367 26 O -0.280 6.280 27 C -0.050 4.050 28 C -0.148 4.148 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.081 0.919 39 H 0.114 0.886 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.113 0.887 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.086 -1.005 -19.375 25.202 hybrid contribution -0.212 -0.603 0.495 0.809 sum -16.298 -1.608 -18.880 24.993 Atomic orbital electron populations 1.23293 0.76121 1.03823 1.02661 1.86498 1.23558 1.33233 1.84026 1.23623 0.91749 0.81435 0.72262 1.90704 1.67079 1.36366 1.44670 1.21005 0.87466 0.98441 1.02516 0.86452 1.22015 0.95988 1.02254 0.96673 1.21827 0.93568 0.81035 1.04507 1.48161 1.46269 1.12728 1.28148 1.20543 0.77879 0.88124 0.81650 1.90742 1.59435 1.15572 1.70402 1.23279 1.02944 1.02321 0.98260 1.84895 1.53503 1.17316 1.35571 1.22289 1.31670 0.97438 1.15467 0.89317 1.24693 0.94644 0.97855 0.94026 1.69934 1.31432 1.33922 1.16318 0.86747 0.79024 0.84778 0.81373 1.19193 1.19912 1.15983 1.20579 0.94054 0.87641 0.92142 0.87774 1.22430 0.76701 0.89378 0.79665 1.90683 1.53832 1.62302 1.29930 1.86366 1.60192 1.29749 1.51699 1.23164 1.00297 0.78073 1.03452 1.21779 0.92234 0.94745 1.06070 0.87937 0.91774 0.91877 0.88453 0.90137 0.90100 0.87728 0.88289 0.88072 0.91906 0.88647 0.92460 0.91258 0.88720 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.90 10.44 -39.26 -0.41 -3.31 16 3 C 0.47 4.45 7.25 36.00 0.26 4.71 16 4 O -0.50 -6.37 15.73 -18.75 -0.29 -6.67 16 5 C -0.08 -0.58 2.59 -91.73 -0.24 -0.81 16 6 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 7 C -0.13 -0.97 5.30 -26.61 -0.14 -1.11 16 8 C 0.11 0.95 6.33 -3.71 -0.02 0.93 16 9 N -0.61 -7.87 2.97 -166.52 -0.49 -8.36 16 10 C 0.53 9.44 7.59 -10.99 -0.08 9.35 16 11 O -0.49 -10.58 11.44 -21.90 -0.25 -10.83 16 12 C -0.12 -2.21 4.54 36.00 0.16 -2.05 16 13 S -0.14 -3.50 18.55 -107.50 -1.99 -5.50 16 14 C -0.52 -14.77 10.04 30.94 0.31 -14.46 16 15 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 16 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 17 N -0.88 -26.32 13.97 55.49 0.78 -25.54 16 18 Si 0.86 21.80 27.74 -169.99 -4.71 17.08 16 19 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 22 C 0.16 1.90 3.35 -68.74 -0.23 1.67 16 23 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 24 C 0.48 7.60 4.48 36.01 0.16 7.77 16 25 O -0.48 -9.47 14.31 -26.93 -0.39 -9.85 16 26 O -0.36 -5.39 10.56 -41.96 -0.44 -5.83 16 27 C 0.04 0.56 10.56 101.05 1.07 1.63 16 28 C -0.11 -1.13 3.85 -26.61 -0.10 -1.24 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 31 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 32 H 0.10 0.52 8.08 -51.93 -0.42 0.10 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.90 5.95 -51.93 -0.31 0.59 16 36 H 0.10 1.72 7.52 -51.92 -0.39 1.33 16 37 H 0.10 1.71 8.08 -51.92 -0.42 1.29 16 38 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 41 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 42 H 0.09 1.26 7.83 -51.93 -0.41 0.85 16 43 H 0.09 0.85 8.07 -51.93 -0.42 0.44 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -38.29 371.88 -6.66 -44.95 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -6.17 Total: -2.12 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: 2.12 Total: 10.36 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.28 Total: -33.90 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -1.78 Total: -36.48 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.08 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.29 -6.66 -44.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356042434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.242 kcal (2) G-P(sol) polarization free energy of solvation -38.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds