Wall clock time and date at job start Wed Apr 1 2020 04:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 116.99755 * 2 1 4 4 O 1.20828 * 120.00013 * 0.02562 * 3 2 1 5 5 C 1.50691 * 120.00190 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.45242 * 59.96221 * 5 3 2 7 7 C 1.53046 * 109.46044 * 300.00184 * 5 3 2 8 8 C 1.53188 * 109.31610 * 178.61162 * 7 5 3 9 9 N 1.46926 * 108.77396 * 54.63723 * 8 7 5 10 10 C 1.34777 * 120.63461 * 126.37159 * 9 8 7 11 11 O 1.21281 * 120.00066 * 184.11315 * 10 9 8 12 12 C 1.50697 * 119.99573 * 4.10896 * 10 9 8 13 13 S 1.81008 * 109.46938 * 180.02562 * 12 10 9 14 14 C 1.76198 * 100.00005 * 179.97438 * 13 12 10 15 15 H 1.08005 * 120.00003 * 0.02562 * 14 13 12 16 16 C 1.38797 * 120.00309 * 180.02562 * 14 13 12 17 17 N 1.31626 * 120.00233 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99729 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46942 * 90.00301 * 18 16 14 20 20 H 1.48494 * 109.47113 * 210.00338 * 18 16 14 21 21 H 1.48503 * 109.47121 * 330.00273 * 18 16 14 22 22 C 1.46934 * 118.73559 * 306.39054 * 9 8 7 23 23 H 1.09002 * 109.58832 * 293.67680 * 22 9 8 24 24 C 1.50709 * 109.58243 * 173.39858 * 22 9 8 25 25 O 1.20822 * 119.99815 * 293.25410 * 24 22 9 26 26 O 1.34223 * 119.99752 * 113.53527 * 24 22 9 27 27 C 1.45200 * 116.99839 * 179.72146 * 26 24 22 28 28 C 1.53034 * 109.46399 * 179.97438 * 5 3 2 29 29 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47010 * 299.99807 * 1 2 3 31 31 H 1.08990 * 109.47284 * 59.99888 * 1 2 3 32 32 H 1.09004 * 109.49637 * 58.65765 * 7 5 3 33 33 H 1.08998 * 109.49546 * 298.56632 * 7 5 3 34 34 H 1.08999 * 109.59011 * 294.84864 * 8 7 5 35 35 H 1.09006 * 109.70723 * 174.49196 * 8 7 5 36 36 H 1.09000 * 109.47264 * 300.00137 * 12 10 9 37 37 H 1.08998 * 109.47463 * 60.00199 * 12 10 9 38 38 H 0.97008 * 119.99725 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.47310 * 179.97438 * 27 26 24 40 40 H 1.09003 * 109.47378 * 299.99760 * 27 26 24 41 41 H 1.09002 * 109.47140 * 59.99966 * 27 26 24 42 42 H 1.09000 * 109.50161 * 61.42794 * 28 5 3 43 43 H 1.09005 * 109.49820 * 301.33635 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9553 0.7804 -0.8906 7 6 4.1137 0.5809 1.2487 8 6 5.6446 0.6328 1.2274 9 7 6.0683 2.0318 1.0798 10 6 6.9346 2.5828 1.9531 11 8 7.2191 3.7584 1.8650 12 6 7.5494 1.7379 3.0390 13 16 8.6596 2.7577 4.0410 14 6 9.2214 1.5528 5.1974 15 1 8.8640 0.5356 5.1341 16 6 10.1232 1.9109 6.1899 17 7 10.5433 1.0107 7.0534 18 14 10.7419 3.6701 6.2991 19 1 9.8417 4.4577 7.1792 20 1 12.1158 3.6776 6.8625 21 1 10.7601 4.2736 4.9423 22 6 5.5294 2.8191 -0.0376 23 1 5.8958 2.4134 -0.9807 24 6 5.9669 4.2548 0.0986 25 8 5.5570 4.9268 1.0152 26 8 6.8074 4.7885 -0.8015 27 6 7.1813 6.1786 -0.6111 28 6 3.9998 2.7426 -0.0011 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 3.7850 -0.4583 1.2611 33 1 3.7448 1.0902 2.1390 34 1 6.0184 0.0472 0.3875 35 1 6.0391 0.2279 2.1594 36 1 6.7614 1.3296 3.6718 37 1 8.1134 0.9212 2.5885 38 1 11.1739 1.2610 7.7468 39 1 7.8627 6.4836 -1.4054 40 1 6.2878 6.8023 -0.6390 41 1 7.6745 6.2932 0.3541 42 1 3.6320 3.2311 0.9013 43 1 3.5901 3.2428 -0.8787 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356042434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:18 Heat of formation + Delta-G solvation = -217.809009 kcal Electronic energy + Delta-G solvation = -28951.774041 eV Core-core repulsion = 24702.278844 eV Total energy + Delta-G solvation = -4249.495198 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.117 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.45094 -41.52300 -40.37233 -38.62918 -37.50181 -37.32513 -34.68363 -34.48364 -33.17378 -30.73340 -29.04718 -28.85755 -27.87197 -26.96198 -25.18544 -23.37306 -22.62615 -21.50670 -20.49061 -19.65436 -19.07407 -18.56175 -18.15273 -17.86711 -17.45058 -17.29742 -17.12973 -17.05688 -16.62842 -16.51020 -15.88114 -15.22671 -15.01889 -14.92511 -14.87623 -14.65588 -14.54196 -14.14613 -14.00195 -13.80447 -13.53533 -13.38208 -13.34047 -13.07597 -13.04554 -12.89723 -12.69176 -12.49779 -12.10885 -11.97883 -11.88985 -11.78315 -11.72983 -11.52594 -11.32815 -11.18682 -10.81748 -10.51162 -9.93184 -9.01205 -8.52491 -6.22631 0.87082 1.09658 1.13464 1.28996 1.34111 1.45157 1.53674 1.58235 1.88118 2.04753 2.23073 2.67339 2.86113 3.29214 3.51923 3.54523 3.63631 3.72718 3.91533 3.99240 4.17320 4.19260 4.27754 4.29482 4.33784 4.34871 4.36247 4.39094 4.47458 4.57273 4.65221 4.67932 4.75149 4.88282 4.96440 5.16796 5.27159 5.36324 5.50283 5.70666 6.02178 6.11528 6.67401 6.78940 6.93584 7.00039 8.59668 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.012448 B = 0.003263 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.830179 B = 8579.267084 C =10325.250475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.469 3.531 4 O -0.542 6.542 5 C -0.067 4.067 6 H 0.163 0.837 7 C -0.125 4.125 8 C 0.105 3.895 9 N -0.601 5.601 10 C 0.525 3.475 11 O -0.536 6.536 12 C -0.099 4.099 13 S -0.185 6.185 14 C -0.522 4.522 15 H 0.068 0.932 16 C 0.048 3.952 17 N -0.915 5.915 18 Si 0.909 3.091 19 H -0.267 1.267 20 H -0.258 1.258 21 H -0.240 1.240 22 C 0.163 3.837 23 H 0.151 0.849 24 C 0.469 3.531 25 O -0.529 6.529 26 O -0.364 6.364 27 C 0.040 3.960 28 C -0.103 4.103 29 H 0.133 0.867 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.129 0.871 33 H 0.055 0.945 34 H 0.126 0.874 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.125 0.875 38 H 0.277 0.723 39 H 0.133 0.867 40 H 0.062 0.938 41 H 0.038 0.962 42 H 0.055 0.945 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.919 -5.133 -22.261 28.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.269 6.269 3 C 0.314 3.686 4 O -0.432 6.432 5 C -0.086 4.086 6 H 0.180 0.820 7 C -0.163 4.163 8 C -0.016 4.016 9 N -0.339 5.339 10 C 0.313 3.687 11 O -0.413 6.413 12 C -0.250 4.250 13 S 0.042 5.958 14 C -0.670 4.670 15 H 0.087 0.913 16 C -0.157 4.157 17 N -0.553 5.553 18 Si 0.732 3.268 19 H -0.192 1.192 20 H -0.182 1.182 21 H -0.164 1.164 22 C 0.059 3.941 23 H 0.168 0.832 24 C 0.312 3.688 25 O -0.417 6.417 26 O -0.281 6.281 27 C -0.053 4.053 28 C -0.141 4.141 29 H 0.151 0.849 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.147 0.853 33 H 0.074 0.926 34 H 0.144 0.856 35 H 0.121 0.879 36 H 0.132 0.868 37 H 0.143 0.857 38 H 0.086 0.914 39 H 0.151 0.849 40 H 0.081 0.919 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.732 -2.947 -21.964 27.768 hybrid contribution -0.188 -0.099 1.185 1.204 sum -16.919 -3.046 -20.779 26.968 Atomic orbital electron populations 1.23539 0.75011 1.05742 1.02277 1.86489 1.24658 1.32251 1.83475 1.23959 0.92403 0.81222 0.71061 1.90702 1.68069 1.37741 1.46683 1.21049 0.86324 0.96659 1.04554 0.81966 1.21997 0.95096 1.03709 0.95478 1.22274 0.94210 0.78574 1.06496 1.48171 1.44328 1.14380 1.26987 1.20347 0.78839 0.87335 0.82148 1.90742 1.61522 1.17301 1.71756 1.23232 1.02072 1.01646 0.98011 1.84915 1.55752 1.18824 1.36323 1.22413 1.31229 0.97213 1.16101 0.91350 1.25467 0.95071 1.01216 0.93955 1.70001 1.32444 1.35654 1.17183 0.85939 0.79195 0.80575 0.81082 1.19238 1.18196 1.16361 1.20917 0.94796 0.85133 0.93244 0.83184 1.23343 0.75757 0.90832 0.78845 1.90656 1.55447 1.63802 1.31816 1.86366 1.59774 1.30591 1.51328 1.23332 1.01116 0.77582 1.03259 1.21676 0.91039 0.96776 1.04641 0.84865 0.92665 0.91876 0.85318 0.92618 0.85586 0.87855 0.86838 0.85677 0.91378 0.84853 0.91899 0.94333 0.92597 0.88207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.35 -4.68 10.44 -51.43 -0.54 -5.22 16 3 C 0.47 7.87 7.25 71.23 0.52 8.39 16 4 O -0.54 -13.44 15.73 21.96 0.35 -13.09 16 5 C -0.07 -0.79 2.59 -11.52 -0.03 -0.82 16 6 H 0.16 0.55 8.14 -2.39 -0.02 0.53 16 7 C -0.12 -1.39 5.30 30.67 0.16 -1.23 16 8 C 0.10 1.32 6.33 86.36 0.55 1.86 16 9 N -0.60 -13.89 2.97 -799.15 -2.37 -16.26 16 10 C 0.53 18.23 7.59 87.66 0.67 18.90 16 11 O -0.54 -23.54 11.44 23.22 0.27 -23.27 16 12 C -0.10 -3.61 4.54 71.24 0.32 -3.29 16 13 S -0.18 -9.36 18.55 -56.49 -1.05 -10.41 16 14 C -0.52 -29.91 10.04 67.95 0.68 -29.23 16 15 H 0.07 4.07 8.03 -2.91 -0.02 4.04 16 16 C 0.05 2.83 5.50 84.86 0.47 3.30 16 17 N -0.91 -55.25 13.97 21.65 0.30 -54.94 16 18 Si 0.91 45.46 27.74 68.60 1.90 47.37 16 19 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 20 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.24 -12.03 6.74 99.48 0.67 -11.36 16 22 C 0.16 3.44 3.35 44.23 0.15 3.59 16 23 H 0.15 1.88 8.14 -2.39 -0.02 1.86 16 24 C 0.47 14.79 4.48 71.24 0.32 15.11 16 25 O -0.53 -21.54 14.31 29.80 0.43 -21.12 16 26 O -0.36 -10.50 10.56 -48.74 -0.51 -11.01 16 27 C 0.04 1.03 10.56 113.37 1.20 2.23 16 28 C -0.10 -1.94 3.85 30.67 0.12 -1.82 16 29 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.05 0.65 8.13 -2.38 -0.02 0.63 16 31 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 32 H 0.13 0.73 8.08 -2.39 -0.02 0.71 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.10 1.40 5.95 -2.38 -0.01 1.38 16 36 H 0.11 3.80 7.52 -2.40 -0.02 3.78 16 37 H 0.13 3.95 8.08 -2.40 -0.02 3.94 16 38 H 0.28 15.50 8.31 -92.70 -0.77 14.73 16 39 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.06 1.49 8.13 -2.39 -0.02 1.48 16 41 H 0.04 1.21 8.13 -2.39 -0.02 1.19 16 42 H 0.06 1.51 7.83 -2.39 -0.02 1.50 16 43 H 0.10 1.70 8.07 -2.38 -0.02 1.68 16 Total: -1.00 -88.54 371.88 6.07 -82.47 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 0.99 Total: 7.04 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 6.31 Total: 18.46 kcal Atomic # 7 Polarization: -69.13 SS G_CDS: -2.07 Total: -71.21 kcal Atomic # 8 Polarization: -73.70 SS G_CDS: -0.01 Total: -73.71 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.90 Total: 47.37 kcal Atomic # 16 Polarization: -9.36 SS G_CDS: -1.05 Total: -10.41 kcal Total: -88.54 6.07 -82.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356042434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.341 kcal (2) G-P(sol) polarization free energy of solvation -88.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds