Wall clock time and date at job start Wed Apr 1 2020 03:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47055 * 2 1 4 4 C 1.53007 * 109.46671 * 240.00352 * 2 1 3 5 5 O 1.42896 * 109.47339 * 305.00099 * 4 2 1 6 6 C 1.42903 * 114.00166 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47023 * 179.97438 * 6 5 4 8 8 F 1.39899 * 109.46915 * 60.00610 * 7 6 5 9 9 F 1.39902 * 109.46580 * 180.02562 * 7 6 5 10 10 F 1.39894 * 109.47353 * 300.00053 * 7 6 5 11 11 N 1.46491 * 109.47181 * 120.00713 * 2 1 3 12 12 S 1.65601 * 120.00069 * 264.99453 * 11 2 1 13 13 O 1.42098 * 104.27794 * 308.93453 * 12 11 2 14 14 O 1.42098 * 104.27820 * 181.06901 * 12 11 2 15 15 C 1.81407 * 104.44612 * 65.00248 * 12 11 2 16 16 C 1.53000 * 109.47091 * 174.34737 * 15 12 11 17 17 C 1.50702 * 115.55070 * 295.23001 * 16 15 12 18 18 H 1.07993 * 120.00226 * 95.16158 * 17 16 15 19 19 C 1.37882 * 119.99822 * 274.88891 * 17 16 15 20 20 N 1.31515 * 119.99551 * 6.44628 * 19 17 16 21 21 Si 1.86792 * 120.00141 * 186.44700 * 19 17 16 22 22 H 1.48500 * 109.47156 * 89.99648 * 21 19 17 23 23 H 1.48496 * 109.47324 * 210.00192 * 21 19 17 24 24 H 1.48504 * 109.47240 * 330.00108 * 21 19 17 25 25 C 1.52998 * 117.49864 * 80.89449 * 16 15 12 26 26 C 1.52998 * 117.50210 * 149.55494 * 16 15 12 27 27 H 1.09005 * 109.47225 * 59.99435 * 1 2 3 28 28 H 1.09000 * 109.47549 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46854 * 299.99548 * 1 2 3 30 30 H 1.09003 * 109.46712 * 65.00356 * 4 2 1 31 31 H 1.09001 * 109.46944 * 184.99866 * 4 2 1 32 32 H 1.08997 * 109.46830 * 299.99989 * 6 5 4 33 33 H 1.09003 * 109.46700 * 59.99741 * 6 5 4 34 34 H 0.97001 * 120.00549 * 84.99641 * 11 2 1 35 35 H 1.08995 * 109.46970 * 54.34720 * 15 12 11 36 36 H 1.09000 * 109.46775 * 294.34286 * 15 12 11 37 37 H 0.97003 * 119.99746 * 185.04386 * 20 19 17 38 38 H 1.09007 * 117.50251 * 215.00100 * 25 16 15 39 39 H 1.09003 * 117.50010 * 0.02562 * 25 16 15 40 40 H 1.09008 * 117.49227 * 359.97438 * 26 16 15 41 41 H 1.08996 * 117.50141 * 144.97145 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 8 1.4701 -2.0303 -1.3097 6 6 1.8834 -2.7924 -2.4457 7 6 1.2160 -4.1686 -2.4068 8 9 -0.1742 -4.0134 -2.4301 9 9 1.6211 -4.9148 -3.5186 10 9 1.5912 -4.8360 -1.2359 11 7 2.0183 -0.6907 1.1960 12 16 2.4123 0.1769 2.5504 13 8 3.2876 1.1904 2.0750 14 8 2.8607 -0.8033 3.4764 15 6 0.8409 0.8986 3.0985 16 6 1.0476 1.6165 4.4337 17 6 1.4276 0.7337 5.5944 18 1 2.4672 0.6044 5.8569 19 6 0.4477 0.0954 6.3248 20 7 -0.8067 0.1536 5.9340 21 14 0.9018 -0.8520 7.8693 22 1 0.8377 0.0552 9.0433 23 1 -0.0508 -1.9752 8.0591 24 1 2.2796 -1.3890 7.7335 25 6 1.6426 3.0255 4.3935 26 6 0.1620 2.8288 4.7286 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.7516 -0.1581 -2.1370 31 1 3.1263 -0.7995 -1.2058 32 1 1.5914 -2.2721 -3.3579 33 1 2.9665 -2.9135 -2.4273 34 1 2.1110 -1.6563 1.1947 35 1 0.1013 0.1076 3.2220 36 1 0.4891 1.6119 2.3532 37 1 -1.5049 -0.2325 6.4856 38 1 2.3088 3.3140 5.2067 39 1 1.8864 3.4412 3.4158 40 1 -0.5677 3.1151 3.9711 41 1 -0.1462 2.9875 5.7620 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451123837.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:24 Heat of formation + Delta-G solvation = -252.008764 kcal Electronic energy + Delta-G solvation = -29403.316897 eV Core-core repulsion = 24610.481946 eV Total energy + Delta-G solvation = -4792.834951 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.105 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.36441 -47.93652 -47.80183 -38.93650 -36.76454 -36.36643 -35.77900 -35.08671 -32.00736 -30.68927 -29.49876 -28.23360 -26.50234 -25.39989 -23.61613 -21.48288 -21.22203 -19.78223 -18.97969 -18.88847 -18.70097 -18.12762 -17.11015 -16.76037 -16.41281 -16.38364 -15.63707 -15.06001 -14.75658 -14.72242 -14.62202 -14.44960 -14.28275 -14.11971 -13.98858 -13.98063 -13.82614 -13.54073 -13.25368 -12.87822 -12.64083 -12.06187 -11.91866 -11.82955 -11.71081 -11.35056 -11.30489 -11.19239 -11.05262 -10.90281 -10.82454 -10.55217 -10.47431 -10.26801 -10.10075 -9.74680 -9.28080 -8.94668 -8.52748 -8.10243 -6.11468 -4.20442 1.08071 2.12684 2.97306 3.32124 3.38600 3.39867 3.47508 3.49203 3.66139 4.11148 4.41419 4.50353 4.56216 4.61985 4.62201 4.76617 4.95509 5.03888 5.15486 5.16507 5.22272 5.34637 5.52569 5.69059 5.84247 5.93164 6.14981 6.22195 6.33974 6.35982 6.47190 6.60749 6.68553 6.97781 7.23250 7.32717 7.38146 7.84707 8.21853 8.86046 9.50543 10.96982 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.015135 B = 0.003095 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.593524 B = 9044.522510 C = 9820.560233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.151 3.849 3 H 0.106 0.894 4 C 0.060 3.940 5 O -0.366 6.366 6 C 0.018 3.982 7 C 0.460 3.540 8 F -0.175 7.175 9 F -0.180 7.180 10 F -0.173 7.173 11 N -1.124 6.124 12 S 2.603 3.397 13 O -0.981 6.981 14 O -0.942 6.942 15 C -0.553 4.553 16 C 0.043 3.957 17 C -0.507 4.507 18 H 0.070 0.930 19 C 0.079 3.921 20 N -0.876 5.876 21 Si 0.890 3.110 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.267 1.267 25 C -0.214 4.214 26 C -0.138 4.138 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.417 0.583 35 H 0.136 0.864 36 H 0.098 0.902 37 H 0.262 0.738 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.005 -3.171 -20.061 20.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.043 3.957 3 H 0.124 0.876 4 C -0.017 4.017 5 O -0.285 6.285 6 C -0.061 4.061 7 C 0.406 3.594 8 F -0.157 7.157 9 F -0.161 7.161 10 F -0.155 7.155 11 N -0.881 5.881 12 S 2.700 3.300 13 O -0.971 6.971 14 O -0.933 6.933 15 C -0.687 4.687 16 C 0.040 3.960 17 C -0.544 4.544 18 H 0.088 0.912 19 C -0.125 4.125 20 N -0.512 5.512 21 Si 0.717 3.283 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.191 1.191 25 C -0.252 4.252 26 C -0.178 4.178 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.250 0.750 35 H 0.154 0.846 36 H 0.116 0.884 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.568 -3.149 -19.569 19.987 hybrid contribution -0.667 -0.983 0.466 1.276 sum 1.901 -4.132 -19.104 19.638 Atomic orbital electron populations 1.22410 0.94581 1.04010 1.02792 1.20818 0.95032 0.96021 0.83820 0.87618 1.22972 0.98098 0.82129 0.98513 1.87933 1.70195 1.27678 1.42656 1.23498 1.00604 0.88900 0.93100 1.20199 0.77454 0.87963 0.73770 1.93226 1.30656 1.95736 1.96059 1.93205 1.90478 1.78816 1.53619 1.93244 1.90986 1.82705 1.48530 1.56025 1.84155 1.20092 1.27853 1.05238 0.77826 0.74593 0.72348 1.93490 1.62658 1.60850 1.80132 1.93576 1.79873 1.58615 1.61193 1.30073 1.20140 1.11649 1.06797 1.18317 1.00960 0.86099 0.90589 1.20556 0.93823 1.27309 1.12713 0.91180 1.24929 0.94927 0.95009 0.97632 1.70010 0.99683 1.44792 1.36699 0.86598 0.79119 0.79650 0.82961 1.20563 1.21092 1.19102 1.23250 0.97680 1.03086 1.01162 1.22527 0.90717 1.03688 1.00841 0.91657 0.90739 0.91268 0.91267 0.91445 0.88609 0.88546 0.74968 0.84554 0.88363 0.92854 0.89492 0.90702 0.91532 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 9.28 37.16 0.34 -1.62 16 2 C 0.15 1.72 3.21 -67.93 -0.22 1.51 16 3 H 0.11 1.14 7.48 -51.93 -0.39 0.75 16 4 C 0.06 0.51 5.73 37.16 0.21 0.73 16 5 O -0.37 -3.50 9.06 -35.23 -0.32 -3.82 16 6 C 0.02 0.12 5.90 37.16 0.22 0.34 16 7 C 0.46 4.14 3.32 37.16 0.12 4.27 16 8 F -0.18 -1.85 17.26 2.25 0.04 -1.81 16 9 F -0.18 -1.53 17.32 2.25 0.04 -1.49 16 10 F -0.17 -1.95 17.26 2.25 0.04 -1.91 16 11 N -1.12 -16.49 5.35 -4.89 -0.03 -16.52 16 12 S 2.60 51.17 5.33 -107.50 -0.57 50.59 16 13 O -0.98 -20.43 17.39 -57.54 -1.00 -21.43 16 14 O -0.94 -22.48 17.10 -57.54 -0.98 -23.47 16 15 C -0.55 -11.26 4.88 37.16 0.18 -11.07 16 16 C 0.04 1.02 1.34 -155.66 -0.21 0.81 16 17 C -0.51 -13.80 7.66 -34.44 -0.26 -14.06 16 18 H 0.07 1.97 7.82 -52.49 -0.41 1.56 16 19 C 0.08 2.17 5.39 -17.82 -0.10 2.07 16 20 N -0.88 -24.05 12.93 55.43 0.72 -23.33 16 21 Si 0.89 21.51 29.55 -169.99 -5.02 16.49 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 25 C -0.21 -4.60 9.96 -26.70 -0.27 -4.86 16 26 C -0.14 -3.10 9.44 -26.70 -0.25 -3.35 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.87 7.56 -51.93 -0.39 0.48 16 29 H 0.07 0.83 5.97 -51.93 -0.31 0.52 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.42 5.80 8.54 -34.47 -0.29 5.51 16 35 H 0.14 2.91 8.14 -51.93 -0.42 2.49 16 36 H 0.10 1.66 7.11 -51.92 -0.37 1.29 16 37 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 38 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 39 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 41 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 LS Contribution 370.17 15.07 5.58 5.58 Total: -1.00 -33.46 370.17 -7.26 -40.72 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.53 Total: 5.64 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: -0.22 Total: -25.24 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.69 Total: -39.85 kcal Atomic # 8 Polarization: -46.42 SS G_CDS: -2.30 Total: -48.72 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.12 Total: -5.21 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 51.17 SS G_CDS: -0.57 Total: 50.59 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.46 -7.26 -40.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451123837.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -211.286 kcal (2) G-P(sol) polarization free energy of solvation -33.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds