Wall clock time and date at job start Wed Apr 1 2020 03:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47055 * 2 1 4 4 C 1.53007 * 109.46671 * 240.00352 * 2 1 3 5 5 O 1.42896 * 109.47339 * 305.00099 * 4 2 1 6 6 C 1.42903 * 114.00166 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47023 * 179.97438 * 6 5 4 8 8 F 1.39899 * 109.46915 * 60.00610 * 7 6 5 9 9 F 1.39902 * 109.46580 * 180.02562 * 7 6 5 10 10 F 1.39894 * 109.47353 * 300.00053 * 7 6 5 11 11 N 1.46491 * 109.47181 * 120.00713 * 2 1 3 12 12 S 1.65601 * 120.00069 * 264.99453 * 11 2 1 13 13 O 1.42098 * 104.27794 * 308.93453 * 12 11 2 14 14 O 1.42098 * 104.27820 * 181.06901 * 12 11 2 15 15 C 1.81407 * 104.44612 * 65.00248 * 12 11 2 16 16 C 1.53000 * 109.47091 * 174.34737 * 15 12 11 17 17 C 1.50702 * 115.55070 * 295.23001 * 16 15 12 18 18 H 1.07993 * 120.00226 * 95.16158 * 17 16 15 19 19 C 1.37882 * 119.99822 * 274.88891 * 17 16 15 20 20 N 1.31515 * 119.99551 * 6.44628 * 19 17 16 21 21 Si 1.86792 * 120.00141 * 186.44700 * 19 17 16 22 22 H 1.48500 * 109.47156 * 89.99648 * 21 19 17 23 23 H 1.48496 * 109.47324 * 210.00192 * 21 19 17 24 24 H 1.48504 * 109.47240 * 330.00108 * 21 19 17 25 25 C 1.52998 * 117.49864 * 80.89449 * 16 15 12 26 26 C 1.52998 * 117.50210 * 149.55494 * 16 15 12 27 27 H 1.09005 * 109.47225 * 59.99435 * 1 2 3 28 28 H 1.09000 * 109.47549 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46854 * 299.99548 * 1 2 3 30 30 H 1.09003 * 109.46712 * 65.00356 * 4 2 1 31 31 H 1.09001 * 109.46944 * 184.99866 * 4 2 1 32 32 H 1.08997 * 109.46830 * 299.99989 * 6 5 4 33 33 H 1.09003 * 109.46700 * 59.99741 * 6 5 4 34 34 H 0.97001 * 120.00549 * 84.99641 * 11 2 1 35 35 H 1.08995 * 109.46970 * 54.34720 * 15 12 11 36 36 H 1.09000 * 109.46775 * 294.34286 * 15 12 11 37 37 H 0.97003 * 119.99746 * 185.04386 * 20 19 17 38 38 H 1.09007 * 117.50251 * 215.00100 * 25 16 15 39 39 H 1.09003 * 117.50010 * 0.02562 * 25 16 15 40 40 H 1.09008 * 117.49227 * 359.97438 * 26 16 15 41 41 H 1.08996 * 117.50141 * 144.97145 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 8 1.4701 -2.0303 -1.3097 6 6 1.8834 -2.7924 -2.4457 7 6 1.2160 -4.1686 -2.4068 8 9 -0.1742 -4.0134 -2.4301 9 9 1.6211 -4.9148 -3.5186 10 9 1.5912 -4.8360 -1.2359 11 7 2.0183 -0.6907 1.1960 12 16 2.4123 0.1769 2.5504 13 8 3.2876 1.1904 2.0750 14 8 2.8607 -0.8033 3.4764 15 6 0.8409 0.8986 3.0985 16 6 1.0476 1.6165 4.4337 17 6 1.4276 0.7337 5.5944 18 1 2.4672 0.6044 5.8569 19 6 0.4477 0.0954 6.3248 20 7 -0.8067 0.1536 5.9340 21 14 0.9018 -0.8520 7.8693 22 1 0.8377 0.0552 9.0433 23 1 -0.0508 -1.9752 8.0591 24 1 2.2796 -1.3890 7.7335 25 6 1.6426 3.0255 4.3935 26 6 0.1620 2.8288 4.7286 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.7516 -0.1581 -2.1370 31 1 3.1263 -0.7995 -1.2058 32 1 1.5914 -2.2721 -3.3579 33 1 2.9665 -2.9135 -2.4273 34 1 2.1110 -1.6563 1.1947 35 1 0.1013 0.1076 3.2220 36 1 0.4891 1.6119 2.3532 37 1 -1.5049 -0.2325 6.4856 38 1 2.3088 3.3140 5.2067 39 1 1.8864 3.4412 3.4158 40 1 -0.5677 3.1151 3.9711 41 1 -0.1462 2.9875 5.7620 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451123837.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:23 Heat of formation + Delta-G solvation = -276.125798 kcal Electronic energy + Delta-G solvation = -29404.362690 eV Core-core repulsion = 24610.481946 eV Total energy + Delta-G solvation = -4793.880744 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.105 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.08165 -48.63842 -48.57437 -39.61141 -38.54667 -37.93973 -36.84212 -36.69416 -34.05038 -31.51984 -30.35784 -29.79120 -27.54464 -27.11952 -24.24043 -22.98507 -22.34032 -21.50542 -20.29683 -19.60105 -19.59196 -18.92560 -18.42152 -18.29863 -17.62366 -17.08372 -16.76723 -16.68847 -16.46649 -15.83267 -15.60976 -15.47783 -15.40392 -15.02467 -15.00185 -14.90104 -14.75349 -14.73514 -14.37355 -13.83988 -13.66069 -13.61136 -13.44022 -13.16271 -12.92579 -12.87516 -12.81742 -12.78012 -12.60887 -12.41927 -12.24273 -12.18727 -11.92037 -11.82146 -11.52542 -10.84665 -10.81782 -10.55743 -10.45129 -9.85449 -8.17651 -6.29842 -0.46098 1.37696 1.41107 1.51674 1.51981 2.02712 2.35676 2.42061 2.88530 2.98999 3.04043 3.10965 3.37341 3.43793 3.50982 3.78433 4.05234 4.08494 4.16793 4.18486 4.26640 4.34802 4.45653 4.51794 4.55796 4.63182 4.74909 4.86325 4.98510 4.99701 5.23164 5.24068 5.46486 5.53456 5.61139 5.75521 5.87443 6.17631 6.25445 6.76481 7.41865 8.90006 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.015135 B = 0.003095 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.593524 B = 9044.522510 C = 9820.560233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.136 3.864 3 H 0.116 0.884 4 C 0.062 3.938 5 O -0.392 6.392 6 C 0.019 3.981 7 C 0.454 3.546 8 F -0.188 7.188 9 F -0.178 7.178 10 F -0.192 7.192 11 N -1.113 6.113 12 S 2.621 3.379 13 O -0.993 6.993 14 O -0.994 6.994 15 C -0.550 4.550 16 C 0.008 3.992 17 C -0.523 4.523 18 H 0.048 0.952 19 C 0.040 3.960 20 N -0.893 5.893 21 Si 0.932 3.068 22 H -0.269 1.269 23 H -0.279 1.279 24 H -0.277 1.277 25 C -0.200 4.200 26 C -0.136 4.136 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.129 0.871 33 H 0.117 0.883 34 H 0.420 0.580 35 H 0.122 0.878 36 H 0.134 0.866 37 H 0.263 0.737 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.030 -2.317 -22.390 22.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.030 3.970 3 H 0.134 0.866 4 C -0.015 4.015 5 O -0.311 6.311 6 C -0.059 4.059 7 C 0.400 3.600 8 F -0.169 7.169 9 F -0.159 7.159 10 F -0.173 7.173 11 N -0.873 5.873 12 S 2.718 3.282 13 O -0.983 6.983 14 O -0.984 6.984 15 C -0.683 4.683 16 C 0.006 3.994 17 C -0.560 4.560 18 H 0.066 0.934 19 C -0.162 4.162 20 N -0.530 5.530 21 Si 0.758 3.242 22 H -0.194 1.194 23 H -0.204 1.204 24 H -0.202 1.202 25 C -0.238 4.238 26 C -0.176 4.176 27 H 0.113 0.887 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.125 0.875 31 H 0.093 0.907 32 H 0.146 0.854 33 H 0.135 0.865 34 H 0.256 0.744 35 H 0.140 0.860 36 H 0.152 0.848 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.590 -2.284 -21.894 22.164 hybrid contribution -0.673 -1.264 1.094 1.802 sum 1.917 -3.549 -20.800 21.187 Atomic orbital electron populations 1.22401 0.94236 1.03495 1.03562 1.21246 0.95431 0.96770 0.83577 0.86610 1.23013 0.98384 0.82008 0.98144 1.87884 1.70756 1.28350 1.44142 1.23698 1.01474 0.87225 0.93466 1.20660 0.77066 0.89093 0.73145 1.93198 1.31839 1.95814 1.96076 1.93204 1.90364 1.79019 1.53346 1.93205 1.91089 1.83313 1.49727 1.55610 1.84096 1.20064 1.27520 1.04396 0.77359 0.73981 0.72450 1.93464 1.63067 1.61405 1.80348 1.93505 1.80943 1.60097 1.63838 1.29957 1.20338 1.11906 1.06070 1.18440 1.02917 0.86779 0.91242 1.20726 0.92847 1.28109 1.14354 0.93363 1.25470 0.95124 0.95857 0.99750 1.70054 0.99971 1.45614 1.37357 0.85943 0.78265 0.79017 0.80994 1.19393 1.20401 1.20197 1.23308 0.96945 1.01096 1.02413 1.22484 0.91763 1.02942 1.00362 0.88663 0.91914 0.92694 0.87454 0.90723 0.85361 0.86486 0.74446 0.85987 0.84772 0.92764 0.89892 0.87961 0.89266 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.46 9.28 71.98 0.67 -2.79 16 2 C 0.14 2.73 3.21 45.00 0.14 2.88 16 3 H 0.12 2.11 7.48 -2.39 -0.02 2.09 16 4 C 0.06 0.82 5.73 71.98 0.41 1.24 16 5 O -0.39 -6.45 9.06 -148.98 -1.35 -7.80 16 6 C 0.02 0.20 5.90 71.98 0.42 0.63 16 7 C 0.45 7.54 3.32 71.98 0.24 7.78 16 8 F -0.19 -3.78 17.26 44.97 0.78 -3.00 16 9 F -0.18 -2.77 17.32 44.97 0.78 -1.99 16 10 F -0.19 -4.23 17.26 44.97 0.78 -3.46 16 11 N -1.11 -31.27 5.35 -169.39 -0.91 -32.17 16 12 S 2.62 101.81 5.33 -56.49 -0.30 101.51 16 13 O -0.99 -39.98 17.39 -127.65 -2.22 -42.20 16 14 O -0.99 -48.49 17.10 -127.65 -2.18 -50.67 16 15 C -0.55 -21.93 4.88 71.98 0.35 -21.58 16 16 C 0.01 0.40 1.34 -52.93 -0.07 0.33 16 17 C -0.52 -29.01 7.66 25.60 0.20 -28.82 16 18 H 0.05 2.81 7.82 -2.91 -0.02 2.78 16 19 C 0.04 2.22 5.39 84.66 0.46 2.68 16 20 N -0.89 -49.45 12.93 21.45 0.28 -49.17 16 21 Si 0.93 44.66 29.55 68.60 2.03 46.68 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 25 C -0.20 -8.33 9.96 30.62 0.30 -8.02 16 26 C -0.14 -5.97 9.44 30.62 0.29 -5.69 16 27 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.06 1.37 7.56 -2.39 -0.02 1.35 16 29 H 0.05 1.21 5.97 -2.39 -0.01 1.19 16 30 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.42 11.45 8.54 -96.75 -0.83 10.62 16 35 H 0.12 5.23 8.14 -2.39 -0.02 5.21 16 36 H 0.13 4.22 7.11 -2.39 -0.02 4.20 16 37 H 0.26 13.92 8.32 -92.71 -0.77 13.15 16 38 H 0.08 3.46 8.14 -2.38 -0.02 3.45 16 39 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 40 H 0.09 3.44 8.14 -2.38 -0.02 3.42 16 41 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -73.48 370.17 1.33 -72.15 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.24 Total: 21.48 kcal Atomic # 6 Polarization: -54.79 SS G_CDS: 3.42 Total: -51.37 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -0.63 Total: -81.35 kcal Atomic # 8 Polarization: -94.91 SS G_CDS: -5.75 Total: -100.66 kcal Atomic # 9 Polarization: -10.78 SS G_CDS: 2.33 Total: -8.45 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: 101.81 SS G_CDS: -0.30 Total: 101.51 kcal Total: -73.48 1.33 -72.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451123837.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.972 kcal (2) G-P(sol) polarization free energy of solvation -73.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -276.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds