Wall clock time and date at job start Wed Apr 1 2020 03:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46878 * 2 1 4 4 C 1.53001 * 109.47177 * 119.99987 * 2 1 3 5 5 O 1.42902 * 109.47232 * 54.99516 * 4 2 1 6 6 C 1.42900 * 113.99892 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.46879 * 180.02562 * 6 5 4 8 8 F 1.39897 * 109.46995 * 59.99810 * 7 6 5 9 9 F 1.39897 * 109.46836 * 180.02562 * 7 6 5 10 10 F 1.39899 * 109.46714 * 300.00205 * 7 6 5 11 11 N 1.46499 * 109.47042 * 239.99799 * 2 1 3 12 12 S 1.65606 * 119.99926 * 94.99912 * 11 2 1 13 13 O 1.42100 * 104.27491 * 181.06706 * 12 11 2 14 14 O 1.42095 * 104.27742 * 308.92912 * 12 11 2 15 15 C 1.81405 * 104.44731 * 65.00037 * 12 11 2 16 16 C 1.52998 * 109.46793 * 173.77276 * 15 12 11 17 17 C 1.50701 * 115.54881 * 65.27487 * 16 15 12 18 18 H 1.08003 * 119.99530 * 268.53887 * 17 16 15 19 19 C 1.37869 * 120.00608 * 88.54497 * 17 16 15 20 20 N 1.31517 * 120.00408 * 174.69843 * 19 17 16 21 21 Si 1.86802 * 119.99841 * 354.70285 * 19 17 16 22 22 H 1.48498 * 109.47360 * 92.55161 * 21 19 17 23 23 H 1.48503 * 109.47005 * 212.55383 * 21 19 17 24 24 H 1.48506 * 109.46960 * 332.54897 * 21 19 17 25 25 C 1.52995 * 117.50299 * 279.59670 * 16 15 12 26 26 C 1.52997 * 117.49719 * 210.93731 * 16 15 12 27 27 H 1.08998 * 109.46878 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46989 * 60.00363 * 1 2 3 29 29 H 1.08997 * 109.46976 * 300.00198 * 1 2 3 30 30 H 1.08997 * 109.47276 * 175.00062 * 4 2 1 31 31 H 1.09003 * 109.46866 * 294.99925 * 4 2 1 32 32 H 1.08997 * 109.47058 * 300.00341 * 6 5 4 33 33 H 1.08998 * 109.46772 * 60.00478 * 6 5 4 34 34 H 0.97003 * 120.00125 * 274.99952 * 11 2 1 35 35 H 1.08999 * 109.46925 * 293.77668 * 15 12 11 36 36 H 1.08999 * 109.47184 * 53.77216 * 15 12 11 37 37 H 0.97002 * 120.00047 * 180.02562 * 20 19 17 38 38 H 1.09010 * 117.49754 * 0.02562 * 25 16 15 39 39 H 1.08997 * 117.50466 * 145.01825 * 25 16 15 40 40 H 1.08999 * 117.50019 * 214.98138 * 26 16 15 41 41 H 1.08998 * 117.50018 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 8 1.4702 -2.0303 1.3095 6 6 1.8845 -2.7929 2.4448 7 6 1.2170 -4.1690 2.4060 8 9 1.5911 -4.8359 1.2345 9 9 1.6221 -4.9153 3.5178 10 9 -0.1732 -4.0138 2.4305 11 7 2.0184 -0.6906 -1.1961 12 16 2.4122 0.1771 -2.5505 13 8 2.8123 -0.8077 -3.4936 14 8 1.2751 0.9965 -2.7846 15 6 3.8314 1.1872 -2.0441 16 6 4.3906 1.9273 -3.2608 17 6 3.4729 2.9516 -3.8769 18 1 2.8054 2.6669 -4.6768 19 6 3.4854 4.2522 -3.4196 20 7 2.7622 5.1691 -4.0245 21 14 4.5298 4.7122 -1.9406 22 1 5.8613 5.1810 -2.4014 23 1 3.8593 5.7967 -1.1793 24 1 4.6987 3.5245 -1.0653 25 6 5.3104 1.1463 -4.2015 26 6 5.8919 2.2215 -3.2801 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 0.5139 0.8899 30 1 3.1264 -0.7995 1.2056 31 1 1.7517 -0.1583 2.1370 32 1 2.9676 -2.9141 2.4255 33 1 1.5933 -2.2730 3.3575 34 1 2.1110 -1.6562 -1.1948 35 1 3.5130 1.9106 -1.2934 36 1 4.6039 0.5435 -1.6236 37 1 2.7713 6.0842 -3.7030 38 1 5.5169 0.1050 -3.9537 39 1 5.2521 1.3735 -5.2659 40 1 6.2159 3.1557 -3.7387 41 1 6.4811 1.8882 -2.4258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451123838.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:28 Heat of formation + Delta-G solvation = -246.346511 kcal Electronic energy + Delta-G solvation = -29441.382299 eV Core-core repulsion = 24648.792882 eV Total energy + Delta-G solvation = -4792.589417 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.105 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.43517 -48.00480 -47.87664 -38.99930 -37.17233 -36.46230 -35.84948 -35.13372 -32.20027 -30.77666 -29.51216 -28.57894 -26.55418 -25.56741 -23.68451 -21.75847 -21.53359 -19.77825 -19.01215 -18.96283 -18.72867 -18.19782 -17.20031 -16.88222 -16.66292 -16.38916 -15.69088 -15.29732 -15.13348 -14.81946 -14.75501 -14.42427 -14.35424 -14.16964 -14.06079 -14.05350 -13.92044 -13.58691 -13.04036 -12.90859 -12.78018 -12.66413 -12.40539 -12.07792 -11.73712 -11.45143 -11.40254 -11.28055 -11.23361 -10.97425 -10.84651 -10.68975 -10.40888 -10.33422 -10.16302 -9.80358 -9.39576 -9.19851 -8.70355 -8.49977 -6.20289 -4.27921 0.90028 2.05942 2.90330 3.17250 3.26143 3.27725 3.31656 3.42083 3.59348 4.03821 4.30206 4.37080 4.46961 4.55129 4.57793 4.75893 4.77734 4.82931 4.94455 5.02967 5.08285 5.23923 5.42923 5.58551 5.68965 5.88202 5.94623 5.99739 6.12126 6.15536 6.39082 6.39811 6.44532 6.61571 6.83621 7.02935 7.20378 7.55846 8.33596 8.85643 9.40487 10.91222 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.018775 B = 0.002976 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.985699 B = 9404.774821 C = 9583.361701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.155 3.845 3 H 0.101 0.899 4 C 0.055 3.945 5 O -0.365 6.365 6 C 0.017 3.983 7 C 0.461 3.539 8 F -0.174 7.174 9 F -0.179 7.179 10 F -0.175 7.175 11 N -1.126 6.126 12 S 2.612 3.388 13 O -0.967 6.967 14 O -0.936 6.936 15 C -0.579 4.579 16 C 0.002 3.998 17 C -0.510 4.510 18 H 0.087 0.913 19 C 0.089 3.911 20 N -0.882 5.882 21 Si 0.874 3.126 22 H -0.275 1.275 23 H -0.290 1.290 24 H -0.258 1.258 25 C -0.177 4.177 26 C -0.185 4.185 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.415 0.585 35 H 0.124 0.876 36 H 0.107 0.893 37 H 0.267 0.733 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.448 -14.575 17.633 22.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.047 3.953 3 H 0.119 0.881 4 C -0.022 4.022 5 O -0.284 6.284 6 C -0.062 4.062 7 C 0.406 3.594 8 F -0.156 7.156 9 F -0.161 7.161 10 F -0.157 7.157 11 N -0.883 5.883 12 S 2.707 3.293 13 O -0.957 6.957 14 O -0.926 6.926 15 C -0.711 4.711 16 C -0.001 4.001 17 C -0.546 4.546 18 H 0.105 0.895 19 C -0.116 4.116 20 N -0.517 5.517 21 Si 0.702 3.298 22 H -0.201 1.201 23 H -0.217 1.217 24 H -0.182 1.182 25 C -0.214 4.214 26 C -0.224 4.224 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.249 0.751 35 H 0.142 0.858 36 H 0.125 0.875 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.266 -14.319 16.655 21.966 hybrid contribution 1.225 0.081 1.647 2.054 sum 0.959 -14.238 18.302 23.208 Atomic orbital electron populations 1.22256 0.94011 1.03346 1.03300 1.20789 0.96126 0.95190 0.83170 0.88098 1.23074 0.97933 0.82277 0.98923 1.87931 1.70194 1.27606 1.42683 1.23509 1.00570 0.88897 0.93195 1.20194 0.77464 0.87944 0.73752 1.93236 1.91033 1.82762 1.48523 1.93207 1.90476 1.78795 1.53579 1.93227 1.30654 1.95734 1.96056 1.56091 1.82293 1.19598 1.30304 1.05065 0.76938 0.74449 0.72830 1.93524 1.84834 1.58776 1.58586 1.93587 1.46667 1.69781 1.82533 1.30335 1.18468 1.12986 1.09291 1.18839 0.90474 0.98717 0.92069 1.20348 1.21671 0.92048 1.20573 0.89494 1.24952 0.94600 0.96013 0.96063 1.69897 1.39693 1.02354 1.39731 0.86925 0.80660 0.78465 0.83782 1.20124 1.21684 1.18210 1.23026 1.05437 0.95131 0.97801 1.22986 0.97244 1.00498 1.01684 0.91349 0.90275 0.91934 0.91540 0.91092 0.88540 0.88547 0.75135 0.85769 0.87482 0.92265 0.89996 0.88606 0.88915 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 9.32 37.16 0.35 -1.70 16 2 C 0.16 1.77 3.08 -67.93 -0.21 1.56 16 3 H 0.10 1.09 7.29 -51.93 -0.38 0.71 16 4 C 0.06 0.44 5.73 37.16 0.21 0.65 16 5 O -0.37 -3.23 9.06 -35.23 -0.32 -3.55 16 6 C 0.02 0.10 5.90 37.16 0.22 0.32 16 7 C 0.46 3.78 3.32 37.16 0.12 3.91 16 8 F -0.17 -1.76 17.26 2.25 0.04 -1.72 16 9 F -0.18 -1.41 17.32 2.25 0.04 -1.37 16 10 F -0.18 -1.72 17.26 2.25 0.04 -1.68 16 11 N -1.13 -15.29 5.35 -4.89 -0.03 -15.31 16 12 S 2.61 49.15 5.12 -107.50 -0.55 48.60 16 13 O -0.97 -20.33 18.08 -57.54 -1.04 -21.37 16 14 O -0.94 -21.34 16.78 -57.54 -0.97 -22.30 16 15 C -0.58 -10.63 5.38 37.16 0.20 -10.43 16 16 C 0.00 0.04 0.79 -155.67 -0.12 -0.08 16 17 C -0.51 -13.91 8.78 -34.44 -0.30 -14.22 16 18 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 19 C 0.09 2.46 5.47 -17.82 -0.10 2.36 16 20 N -0.88 -26.21 13.96 55.43 0.77 -25.44 16 21 Si 0.87 20.24 24.96 -169.99 -4.24 16.00 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.26 -5.35 5.68 56.52 0.32 -5.03 16 25 C -0.18 -3.57 9.96 -26.70 -0.27 -3.83 16 26 C -0.19 -3.73 7.67 -26.70 -0.20 -3.93 16 27 H 0.07 0.82 7.56 -51.93 -0.39 0.42 16 28 H 0.08 1.15 7.42 -51.93 -0.39 0.77 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.42 5.04 8.54 -34.48 -0.29 4.75 16 35 H 0.12 2.18 6.03 -51.92 -0.31 1.87 16 36 H 0.11 1.55 8.09 -51.92 -0.42 1.13 16 37 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.08 1.47 8.14 -51.92 -0.42 1.05 16 39 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 40 H 0.09 1.95 7.34 -51.93 -0.38 1.57 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 364.21 15.07 5.49 5.49 Total: -1.00 -34.82 364.21 -6.45 -41.27 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.59 Total: 6.79 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: -0.10 Total: -25.40 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.75 Total: -40.75 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -2.32 Total: -47.23 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.12 Total: -4.78 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.24 Total: 16.00 kcal Atomic # 16 Polarization: 49.15 SS G_CDS: -0.55 Total: 48.60 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.82 -6.45 -41.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451123838.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.079 kcal (2) G-P(sol) polarization free energy of solvation -34.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds