Wall clock time and date at job start Wed Apr 1 2020 03:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46878 * 2 1 4 4 C 1.53001 * 109.47177 * 119.99987 * 2 1 3 5 5 O 1.42902 * 109.47232 * 54.99516 * 4 2 1 6 6 C 1.42900 * 113.99892 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.46879 * 180.02562 * 6 5 4 8 8 F 1.39897 * 109.46995 * 59.99810 * 7 6 5 9 9 F 1.39897 * 109.46836 * 180.02562 * 7 6 5 10 10 F 1.39899 * 109.46714 * 300.00205 * 7 6 5 11 11 N 1.46499 * 109.47042 * 239.99799 * 2 1 3 12 12 S 1.65606 * 119.99926 * 94.99912 * 11 2 1 13 13 O 1.42100 * 104.27491 * 181.06706 * 12 11 2 14 14 O 1.42095 * 104.27742 * 308.92912 * 12 11 2 15 15 C 1.81405 * 104.44731 * 65.00037 * 12 11 2 16 16 C 1.52998 * 109.46793 * 173.77276 * 15 12 11 17 17 C 1.50701 * 115.54881 * 65.27487 * 16 15 12 18 18 H 1.08003 * 119.99530 * 268.53887 * 17 16 15 19 19 C 1.37869 * 120.00608 * 88.54497 * 17 16 15 20 20 N 1.31517 * 120.00408 * 174.69843 * 19 17 16 21 21 Si 1.86802 * 119.99841 * 354.70285 * 19 17 16 22 22 H 1.48498 * 109.47360 * 92.55161 * 21 19 17 23 23 H 1.48503 * 109.47005 * 212.55383 * 21 19 17 24 24 H 1.48506 * 109.46960 * 332.54897 * 21 19 17 25 25 C 1.52995 * 117.50299 * 279.59670 * 16 15 12 26 26 C 1.52997 * 117.49719 * 210.93731 * 16 15 12 27 27 H 1.08998 * 109.46878 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46989 * 60.00363 * 1 2 3 29 29 H 1.08997 * 109.46976 * 300.00198 * 1 2 3 30 30 H 1.08997 * 109.47276 * 175.00062 * 4 2 1 31 31 H 1.09003 * 109.46866 * 294.99925 * 4 2 1 32 32 H 1.08997 * 109.47058 * 300.00341 * 6 5 4 33 33 H 1.08998 * 109.46772 * 60.00478 * 6 5 4 34 34 H 0.97003 * 120.00125 * 274.99952 * 11 2 1 35 35 H 1.08999 * 109.46925 * 293.77668 * 15 12 11 36 36 H 1.08999 * 109.47184 * 53.77216 * 15 12 11 37 37 H 0.97002 * 120.00047 * 180.02562 * 20 19 17 38 38 H 1.09010 * 117.49754 * 0.02562 * 25 16 15 39 39 H 1.08997 * 117.50466 * 145.01825 * 25 16 15 40 40 H 1.08999 * 117.50019 * 214.98138 * 26 16 15 41 41 H 1.08998 * 117.50018 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 8 1.4702 -2.0303 1.3095 6 6 1.8845 -2.7929 2.4448 7 6 1.2170 -4.1690 2.4060 8 9 1.5911 -4.8359 1.2345 9 9 1.6221 -4.9153 3.5178 10 9 -0.1732 -4.0138 2.4305 11 7 2.0184 -0.6906 -1.1961 12 16 2.4122 0.1771 -2.5505 13 8 2.8123 -0.8077 -3.4936 14 8 1.2751 0.9965 -2.7846 15 6 3.8314 1.1872 -2.0441 16 6 4.3906 1.9273 -3.2608 17 6 3.4729 2.9516 -3.8769 18 1 2.8054 2.6669 -4.6768 19 6 3.4854 4.2522 -3.4196 20 7 2.7622 5.1691 -4.0245 21 14 4.5298 4.7122 -1.9406 22 1 5.8613 5.1810 -2.4014 23 1 3.8593 5.7967 -1.1793 24 1 4.6987 3.5245 -1.0653 25 6 5.3104 1.1463 -4.2015 26 6 5.8919 2.2215 -3.2801 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 0.5139 0.8899 30 1 3.1264 -0.7995 1.2056 31 1 1.7517 -0.1583 2.1370 32 1 2.9676 -2.9141 2.4255 33 1 1.5933 -2.2730 3.3575 34 1 2.1110 -1.6562 -1.1948 35 1 3.5130 1.9106 -1.2934 36 1 4.6039 0.5435 -1.6236 37 1 2.7713 6.0842 -3.7030 38 1 5.5169 0.1050 -3.9537 39 1 5.2521 1.3735 -5.2659 40 1 6.2159 3.1557 -3.7387 41 1 6.4811 1.8882 -2.4258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451123838.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:27 Heat of formation + Delta-G solvation = -274.322679 kcal Electronic energy + Delta-G solvation = -29442.595437 eV Core-core repulsion = 24648.792882 eV Total energy + Delta-G solvation = -4793.802555 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.105 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.06512 -48.62292 -48.55797 -39.60294 -38.83280 -37.97399 -36.88728 -36.62848 -34.27275 -31.54357 -30.26796 -30.07993 -27.59483 -27.23868 -24.22133 -23.33558 -22.38578 -21.40983 -20.26686 -19.58574 -19.57790 -18.93644 -18.55556 -18.33914 -17.67028 -17.05281 -16.89386 -16.82885 -16.53847 -15.81969 -15.50189 -15.46109 -15.36233 -15.01354 -14.99091 -14.79840 -14.73802 -14.72009 -14.53935 -14.42738 -13.91486 -13.68919 -13.56945 -13.19190 -12.92992 -12.88429 -12.77127 -12.65614 -12.59777 -12.35974 -12.27764 -12.02933 -11.90570 -11.68172 -11.65717 -10.94882 -10.79525 -10.70858 -10.58085 -10.09922 -8.29358 -6.43639 -0.54879 1.38666 1.40276 1.53829 1.54134 2.03025 2.36156 2.39019 2.89003 2.92333 3.03449 3.05983 3.18371 3.44342 3.47565 3.73229 3.85339 4.10694 4.16371 4.20191 4.20871 4.27750 4.33895 4.38435 4.46380 4.57924 4.64485 4.73754 4.87579 4.99261 5.05101 5.22919 5.23270 5.46661 5.46906 5.63962 5.89193 6.20021 6.22111 6.68174 7.29262 8.87159 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.018775 B = 0.002976 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.985699 B = 9404.774821 C = 9583.361701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.140 3.860 3 H 0.110 0.890 4 C 0.060 3.940 5 O -0.392 6.392 6 C 0.019 3.981 7 C 0.454 3.546 8 F -0.190 7.190 9 F -0.178 7.178 10 F -0.190 7.190 11 N -1.108 6.108 12 S 2.613 3.387 13 O -0.999 6.999 14 O -0.993 6.993 15 C -0.570 4.570 16 C -0.031 4.031 17 C -0.515 4.515 18 H 0.024 0.976 19 C 0.023 3.977 20 N -0.944 5.944 21 Si 0.937 3.063 22 H -0.266 1.266 23 H -0.294 1.294 24 H -0.205 1.205 25 C -0.178 4.178 26 C -0.166 4.166 27 H 0.063 0.937 28 H 0.040 0.960 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.423 0.577 35 H 0.138 0.862 36 H 0.163 0.837 37 H 0.268 0.732 38 H 0.112 0.888 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.559 -15.676 21.969 27.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.033 3.967 3 H 0.128 0.872 4 C -0.017 4.017 5 O -0.312 6.312 6 C -0.058 4.058 7 C 0.400 3.600 8 F -0.172 7.172 9 F -0.160 7.160 10 F -0.171 7.171 11 N -0.869 5.869 12 S 2.711 3.289 13 O -0.989 6.989 14 O -0.983 6.983 15 C -0.703 4.703 16 C -0.034 4.034 17 C -0.553 4.553 18 H 0.042 0.958 19 C -0.176 4.176 20 N -0.582 5.582 21 Si 0.758 3.242 22 H -0.191 1.191 23 H -0.221 1.221 24 H -0.127 1.127 25 C -0.215 4.215 26 C -0.204 4.204 27 H 0.083 0.917 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.259 0.741 35 H 0.156 0.844 36 H 0.181 0.819 37 H 0.077 0.923 38 H 0.131 0.869 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.837 -15.479 20.980 26.226 hybrid contribution 0.155 0.344 0.195 0.425 sum 2.992 -15.135 21.176 26.200 Atomic orbital electron populations 1.22247 0.95207 1.02872 1.02710 1.21160 0.95431 0.96297 0.83828 0.87233 1.23092 0.99111 0.81928 0.97602 1.87882 1.70949 1.28251 1.44110 1.23702 1.01679 0.87096 0.93365 1.20676 0.77005 0.89141 0.73179 1.93202 1.91092 1.83323 1.49545 1.93204 1.90359 1.79031 1.53394 1.93197 1.32017 1.95824 1.96084 1.55560 1.81951 1.19650 1.29700 1.04627 0.76755 0.74053 0.73499 1.93468 1.85142 1.59480 1.60836 1.93530 1.49419 1.71295 1.84013 1.30154 1.18981 1.13501 1.07628 1.18761 0.91061 0.99155 0.94415 1.20459 1.21536 0.93940 1.19322 0.95811 1.26029 0.96190 0.95625 0.99751 1.70088 1.42731 1.02973 1.42432 0.85934 0.78446 0.79852 0.79925 1.19138 1.22132 1.12704 1.23101 1.04564 0.96982 0.96890 1.23099 0.95050 0.99700 1.02569 0.91747 0.94035 0.89367 0.89027 0.87944 0.85951 0.85724 0.74070 0.84356 0.81949 0.92296 0.86941 0.90596 0.90392 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.95 9.32 71.98 0.67 -3.28 16 2 C 0.14 2.78 3.08 44.99 0.14 2.92 16 3 H 0.11 1.99 7.29 -2.39 -0.02 1.97 16 4 C 0.06 0.64 5.73 71.98 0.41 1.05 16 5 O -0.39 -5.46 9.06 -148.98 -1.35 -6.81 16 6 C 0.02 0.16 5.90 71.98 0.42 0.58 16 7 C 0.45 6.47 3.32 71.98 0.24 6.71 16 8 F -0.19 -3.58 17.26 44.97 0.78 -2.81 16 9 F -0.18 -2.43 17.32 44.97 0.78 -1.65 16 10 F -0.19 -3.49 17.26 44.97 0.78 -2.71 16 11 N -1.11 -27.81 5.35 -169.38 -0.91 -28.72 16 12 S 2.61 96.96 5.12 -56.49 -0.29 96.67 16 13 O -1.00 -41.98 18.08 -127.65 -2.31 -44.29 16 14 O -0.99 -47.47 16.78 -127.65 -2.14 -49.61 16 15 C -0.57 -18.67 5.38 71.98 0.39 -18.28 16 16 C -0.03 -1.34 0.79 -52.93 -0.04 -1.38 16 17 C -0.52 -29.12 8.78 25.60 0.22 -28.89 16 18 H 0.02 1.58 8.06 -2.91 -0.02 1.55 16 19 C 0.02 1.29 5.47 84.65 0.46 1.75 16 20 N -0.94 -59.08 13.96 21.44 0.30 -58.78 16 21 Si 0.94 40.02 24.96 68.60 1.71 41.73 16 22 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 23 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 24 H -0.21 -7.00 5.68 99.48 0.57 -6.43 16 25 C -0.18 -6.82 9.96 30.61 0.30 -6.52 16 26 C -0.17 -5.94 7.67 30.62 0.23 -5.71 16 27 H 0.06 1.50 7.56 -2.39 -0.02 1.48 16 28 H 0.04 1.26 7.42 -2.38 -0.02 1.24 16 29 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.09 0.56 8.14 -2.39 -0.02 0.55 16 31 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.42 9.39 8.54 -96.74 -0.83 8.57 16 35 H 0.14 4.16 6.03 -2.39 -0.01 4.15 16 36 H 0.16 3.53 8.09 -2.39 -0.02 3.51 16 37 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 38 H 0.11 3.61 8.14 -2.38 -0.02 3.59 16 39 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 40 H 0.08 3.04 7.34 -2.39 -0.02 3.02 16 41 H 0.12 3.28 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -84.18 364.21 0.90 -83.28 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.10 Total: 24.74 kcal Atomic # 6 Polarization: -54.50 SS G_CDS: 3.46 Total: -51.05 kcal Atomic # 7 Polarization: -86.89 SS G_CDS: -0.61 Total: -87.50 kcal Atomic # 8 Polarization: -94.91 SS G_CDS: -5.80 Total: -100.71 kcal Atomic # 9 Polarization: -9.50 SS G_CDS: 2.33 Total: -7.17 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 1.71 Total: 41.73 kcal Atomic # 16 Polarization: 96.96 SS G_CDS: -0.29 Total: 96.67 kcal Total: -84.18 0.90 -83.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451123838.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.044 kcal (2) G-P(sol) polarization free energy of solvation -84.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -275.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -274.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds