Wall clock time and date at job start Wed Apr 1 2020 04:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99820 * 2 1 4 4 C 1.53001 * 109.47099 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47246 * 64.99979 * 4 3 2 6 6 C 1.46497 * 119.99877 * 275.00242 * 5 4 3 7 7 C 1.52999 * 109.47268 * 274.99865 * 6 5 4 8 8 F 1.39898 * 109.47074 * 59.99916 * 7 6 5 9 9 F 1.39900 * 109.47642 * 180.02562 * 7 6 5 10 10 F 1.39904 * 109.47186 * 300.00161 * 7 6 5 11 11 S 1.65598 * 120.00027 * 94.99980 * 5 4 3 12 12 O 1.42104 * 104.27721 * 153.92650 * 11 5 4 13 13 O 1.42102 * 104.27547 * 26.07253 * 11 5 4 14 14 C 1.81402 * 104.44974 * 270.00197 * 11 5 4 15 15 C 1.53002 * 109.46958 * 186.46059 * 14 11 5 16 16 C 1.50694 * 115.55360 * 299.70423 * 15 14 11 17 17 H 1.08002 * 120.00402 * 95.16284 * 16 15 14 18 18 C 1.37870 * 120.00327 * 275.16745 * 16 15 14 19 19 N 1.31521 * 119.99808 * 7.14458 * 18 16 15 20 20 Si 1.86794 * 120.00505 * 187.14717 * 18 16 15 21 21 H 1.48499 * 109.47464 * 179.97438 * 20 18 16 22 22 H 1.48509 * 109.47082 * 299.99556 * 20 18 16 23 23 H 1.48498 * 109.47518 * 59.99777 * 20 18 16 24 24 C 1.53003 * 117.49589 * 85.37339 * 15 14 11 25 25 C 1.52997 * 117.49739 * 154.02776 * 15 14 11 26 26 H 1.09001 * 109.46787 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47083 * 299.99549 * 1 2 3 28 28 H 1.08995 * 109.47436 * 59.99675 * 1 2 3 29 29 H 1.09004 * 109.47043 * 60.00299 * 3 2 1 30 30 H 1.08998 * 109.47467 * 300.00201 * 3 2 1 31 31 H 1.09001 * 109.47003 * 305.00049 * 4 3 2 32 32 H 1.09003 * 109.47056 * 185.00442 * 4 3 2 33 33 H 1.08999 * 109.47474 * 34.99809 * 6 5 4 34 34 H 1.08999 * 109.47181 * 155.00176 * 6 5 4 35 35 H 1.08998 * 109.47209 * 66.46354 * 14 11 5 36 36 H 1.09000 * 109.46841 * 306.46200 * 14 11 5 37 37 H 0.97009 * 119.99725 * 355.44422 * 19 18 16 38 38 H 1.09000 * 117.50124 * 215.00457 * 24 15 14 39 39 H 1.09003 * 117.49892 * 0.02562 * 24 15 14 40 40 H 1.08999 * 117.49975 * 359.97438 * 25 15 14 41 41 H 1.09004 * 117.50016 * 144.97069 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0004 -0.8949 -1.3781 7 6 5.3192 -1.4326 -0.8191 8 9 5.4329 -1.0785 0.5295 9 9 5.3431 -2.8262 -0.9394 10 9 6.3879 -0.8847 -1.5368 11 16 4.4454 1.5131 -2.5263 12 8 5.3412 0.6921 -3.2631 13 8 4.8878 2.7197 -1.9200 14 6 2.9203 1.7953 -3.4671 15 6 3.2516 2.5320 -4.7664 16 6 3.8974 3.8835 -4.6009 17 1 4.9728 3.9763 -4.6378 18 6 3.1155 5.0015 -4.4023 19 7 1.8197 4.8732 -4.2169 20 14 3.8962 6.6984 -4.3967 21 1 2.8483 7.7248 -4.1654 22 1 4.9103 6.7731 -3.3143 23 1 4.5508 6.9466 -5.7063 24 6 3.6793 1.6871 -5.9682 25 6 2.2974 2.3449 -5.9476 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8515 0.5682 0.8409 32 1 3.9785 2.1766 0.0890 33 1 3.1679 -1.3218 -0.8190 34 1 3.9119 -1.1708 -2.4289 35 1 2.2331 2.3977 -2.8730 36 1 2.4551 0.8376 -3.7007 37 1 1.4041 3.9994 -4.2855 38 1 4.4278 2.1088 -6.6391 39 1 3.7242 0.6064 -5.8332 40 1 1.4338 1.6966 -5.7992 41 1 2.1362 3.1995 -6.6047 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451128192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:03 Heat of formation + Delta-G solvation = -246.556575 kcal Electronic energy + Delta-G solvation = -31174.173156 eV Core-core repulsion = 26381.574630 eV Total energy + Delta-G solvation = -4792.598526 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.105 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.93367 -47.51326 -47.33937 -38.35777 -37.16217 -36.53783 -36.21875 -35.22477 -32.05550 -30.98256 -28.45536 -28.00497 -26.22074 -25.05554 -23.40491 -22.52354 -21.47346 -19.88950 -18.99356 -18.40923 -18.26582 -17.60330 -17.19075 -17.00798 -16.39139 -16.18220 -15.48031 -15.37751 -14.99609 -14.57155 -14.33320 -14.20722 -14.03724 -13.87400 -13.77194 -13.54906 -13.54015 -13.34764 -12.97550 -12.85638 -12.69933 -12.48438 -12.26976 -11.97687 -11.91440 -11.45543 -11.39223 -11.25846 -11.17229 -11.07879 -10.82275 -10.70853 -10.43869 -10.12786 -9.87554 -9.73651 -9.28314 -8.73561 -8.56186 -8.39700 -6.53256 -4.32439 0.73690 2.82665 2.95560 3.41429 3.44978 3.61649 3.61807 3.89509 4.09956 4.22311 4.40476 4.43955 4.63718 4.68207 4.87122 4.95968 5.07946 5.11201 5.16989 5.21749 5.29809 5.31516 5.40077 5.44466 5.53820 5.67888 5.82837 5.83576 5.99154 6.09126 6.25953 6.40718 6.47479 6.68193 6.93349 6.98788 7.11059 7.95644 8.26496 8.69312 9.46780 10.86408 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.012932 B = 0.004802 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.694550 B = 5829.990250 C = 6472.173949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.390 6.390 3 C 0.035 3.965 4 C 0.109 3.891 5 N -0.999 5.999 6 C 0.089 3.911 7 C 0.429 3.571 8 F -0.185 7.185 9 F -0.187 7.187 10 F -0.167 7.167 11 S 2.604 3.396 12 O -0.951 6.951 13 O -0.933 6.933 14 C -0.563 4.563 15 C 0.020 3.980 16 C -0.593 4.593 17 H 0.062 0.938 18 C 0.041 3.959 19 N -0.896 5.896 20 Si 1.061 2.939 21 H -0.281 1.281 22 H -0.280 1.280 23 H -0.285 1.285 24 C -0.189 4.189 25 C -0.163 4.163 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.132 0.868 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.101 0.899 37 H 0.274 0.726 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.490 -11.759 8.781 14.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.309 6.309 3 C -0.043 4.043 4 C -0.016 4.016 5 N -0.831 5.831 6 C -0.040 4.040 7 C 0.373 3.627 8 F -0.166 7.166 9 F -0.168 7.168 10 F -0.148 7.148 11 S 2.701 3.299 12 O -0.942 6.942 13 O -0.923 6.923 14 C -0.696 4.696 15 C 0.018 3.982 16 C -0.630 4.630 17 H 0.080 0.920 18 C -0.166 4.166 19 N -0.530 5.530 20 Si 0.888 3.112 21 H -0.206 1.206 22 H -0.206 1.206 23 H -0.211 1.211 24 C -0.227 4.227 25 C -0.202 4.202 26 H 0.102 0.898 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.137 0.863 33 H 0.150 0.850 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.119 0.881 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.790 -10.018 8.928 13.538 hybrid contribution -0.571 -1.715 -0.206 1.819 sum -2.361 -11.733 8.722 14.809 Atomic orbital electron populations 1.22755 0.81080 1.02571 1.00294 1.87806 1.19690 1.27894 1.95502 1.23211 0.94309 0.85104 1.01640 1.21663 0.92087 1.01137 0.86697 1.58083 1.82662 1.13308 1.29063 1.22346 0.93507 0.82888 1.05277 1.21424 0.89465 0.75549 0.76274 1.93136 1.96789 1.91639 1.35085 1.93160 1.97011 1.30856 1.95791 1.93299 1.59054 1.85110 1.77372 1.05537 0.77462 0.73368 0.73562 1.93555 1.60426 1.68242 1.71941 1.93548 1.79134 1.45132 1.74533 1.30174 1.19707 1.07154 1.12558 1.18557 1.01036 0.95359 0.83245 1.21395 0.94725 0.90116 1.56790 0.91961 1.25815 0.95333 1.03660 0.91779 1.70792 1.10904 1.28475 1.42799 0.83660 0.75594 0.74785 0.77165 1.20596 1.20577 1.21076 1.23055 0.98576 0.97035 1.03991 1.22794 0.91745 1.01891 1.03817 0.89761 0.94081 0.93796 0.91616 0.92357 0.88694 0.86333 0.84988 0.86148 0.85740 0.88061 0.91506 0.89183 0.90582 0.91198 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.38 9.02 -35.23 -0.32 -4.70 16 3 C 0.04 0.42 6.28 37.16 0.23 0.65 16 4 C 0.11 1.41 5.92 -4.04 -0.02 1.39 16 5 N -1.00 -14.91 2.60 -114.38 -0.30 -15.21 16 6 C 0.09 1.12 5.24 -4.04 -0.02 1.10 16 7 C 0.43 6.01 3.29 37.16 0.12 6.13 16 8 F -0.18 -2.53 15.70 2.25 0.04 -2.50 16 9 F -0.19 -2.42 17.32 2.25 0.04 -2.39 16 10 F -0.17 -2.88 15.32 2.25 0.03 -2.84 16 11 S 2.60 51.46 5.00 -107.50 -0.54 50.92 16 12 O -0.95 -20.29 15.13 -57.54 -0.87 -21.16 16 13 O -0.93 -21.62 16.04 -57.54 -0.92 -22.54 16 14 C -0.56 -11.10 5.95 37.16 0.22 -10.88 16 15 C 0.02 0.48 0.95 -155.66 -0.15 0.33 16 16 C -0.59 -15.98 7.90 -34.45 -0.27 -16.25 16 17 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 18 C 0.04 1.13 5.39 -17.82 -0.10 1.03 16 19 N -0.90 -24.86 13.57 55.43 0.75 -24.11 16 20 Si 1.06 24.66 29.91 -169.99 -5.08 19.58 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 C -0.19 -3.99 9.95 -26.70 -0.27 -4.25 16 25 C -0.16 -3.51 8.74 -26.70 -0.23 -3.75 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.75 7.10 -51.93 -0.37 0.39 16 31 H 0.09 1.07 6.73 -51.93 -0.35 0.72 16 32 H 0.12 1.62 6.82 -51.93 -0.35 1.27 16 33 H 0.13 1.34 6.60 -51.93 -0.34 1.00 16 34 H 0.12 1.38 7.61 -51.93 -0.40 0.98 16 35 H 0.12 2.49 6.78 -51.92 -0.35 2.14 16 36 H 0.10 1.64 8.11 -51.92 -0.42 1.21 16 37 H 0.27 7.37 6.17 -40.82 -0.25 7.12 16 38 H 0.09 1.91 8.14 -51.93 -0.42 1.48 16 39 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 LS Contribution 360.41 15.07 5.43 5.43 Total: -1.00 -32.56 360.41 -6.53 -39.09 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -5.42 Total: 3.54 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: 0.63 Total: -23.12 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.45 Total: -39.32 kcal Atomic # 8 Polarization: -46.29 SS G_CDS: -2.11 Total: -48.40 kcal Atomic # 9 Polarization: -7.84 SS G_CDS: 0.11 Total: -7.73 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -5.08 Total: 19.58 kcal Atomic # 16 Polarization: 51.46 SS G_CDS: -0.54 Total: 50.92 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.56 -6.53 -39.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451128192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.462 kcal (2) G-P(sol) polarization free energy of solvation -32.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds