Wall clock time and date at job start Wed Apr 1 2020 04:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99820 * 2 1 4 4 C 1.53001 * 109.47099 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47246 * 64.99979 * 4 3 2 6 6 C 1.46497 * 119.99877 * 275.00242 * 5 4 3 7 7 C 1.52999 * 109.47268 * 274.99865 * 6 5 4 8 8 F 1.39898 * 109.47074 * 59.99916 * 7 6 5 9 9 F 1.39900 * 109.47642 * 180.02562 * 7 6 5 10 10 F 1.39904 * 109.47186 * 300.00161 * 7 6 5 11 11 S 1.65598 * 120.00027 * 94.99980 * 5 4 3 12 12 O 1.42104 * 104.27721 * 153.92650 * 11 5 4 13 13 O 1.42102 * 104.27547 * 26.07253 * 11 5 4 14 14 C 1.81402 * 104.44974 * 270.00197 * 11 5 4 15 15 C 1.53002 * 109.46958 * 186.46059 * 14 11 5 16 16 C 1.50694 * 115.55360 * 299.70423 * 15 14 11 17 17 H 1.08002 * 120.00402 * 95.16284 * 16 15 14 18 18 C 1.37870 * 120.00327 * 275.16745 * 16 15 14 19 19 N 1.31521 * 119.99808 * 7.14458 * 18 16 15 20 20 Si 1.86794 * 120.00505 * 187.14717 * 18 16 15 21 21 H 1.48499 * 109.47464 * 179.97438 * 20 18 16 22 22 H 1.48509 * 109.47082 * 299.99556 * 20 18 16 23 23 H 1.48498 * 109.47518 * 59.99777 * 20 18 16 24 24 C 1.53003 * 117.49589 * 85.37339 * 15 14 11 25 25 C 1.52997 * 117.49739 * 154.02776 * 15 14 11 26 26 H 1.09001 * 109.46787 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47083 * 299.99549 * 1 2 3 28 28 H 1.08995 * 109.47436 * 59.99675 * 1 2 3 29 29 H 1.09004 * 109.47043 * 60.00299 * 3 2 1 30 30 H 1.08998 * 109.47467 * 300.00201 * 3 2 1 31 31 H 1.09001 * 109.47003 * 305.00049 * 4 3 2 32 32 H 1.09003 * 109.47056 * 185.00442 * 4 3 2 33 33 H 1.08999 * 109.47474 * 34.99809 * 6 5 4 34 34 H 1.08999 * 109.47181 * 155.00176 * 6 5 4 35 35 H 1.08998 * 109.47209 * 66.46354 * 14 11 5 36 36 H 1.09000 * 109.46841 * 306.46200 * 14 11 5 37 37 H 0.97009 * 119.99725 * 355.44422 * 19 18 16 38 38 H 1.09000 * 117.50124 * 215.00457 * 24 15 14 39 39 H 1.09003 * 117.49892 * 0.02562 * 24 15 14 40 40 H 1.08999 * 117.49975 * 359.97438 * 25 15 14 41 41 H 1.09004 * 117.50016 * 144.97069 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0004 -0.8949 -1.3781 7 6 5.3192 -1.4326 -0.8191 8 9 5.4329 -1.0785 0.5295 9 9 5.3431 -2.8262 -0.9394 10 9 6.3879 -0.8847 -1.5368 11 16 4.4454 1.5131 -2.5263 12 8 5.3412 0.6921 -3.2631 13 8 4.8878 2.7197 -1.9200 14 6 2.9203 1.7953 -3.4671 15 6 3.2516 2.5320 -4.7664 16 6 3.8974 3.8835 -4.6009 17 1 4.9728 3.9763 -4.6378 18 6 3.1155 5.0015 -4.4023 19 7 1.8197 4.8732 -4.2169 20 14 3.8962 6.6984 -4.3967 21 1 2.8483 7.7248 -4.1654 22 1 4.9103 6.7731 -3.3143 23 1 4.5508 6.9466 -5.7063 24 6 3.6793 1.6871 -5.9682 25 6 2.2974 2.3449 -5.9476 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8515 0.5682 0.8409 32 1 3.9785 2.1766 0.0890 33 1 3.1679 -1.3218 -0.8190 34 1 3.9119 -1.1708 -2.4289 35 1 2.2331 2.3977 -2.8730 36 1 2.4551 0.8376 -3.7007 37 1 1.4041 3.9994 -4.2855 38 1 4.4278 2.1088 -6.6391 39 1 3.7242 0.6064 -5.8332 40 1 1.4338 1.6966 -5.7992 41 1 2.1362 3.1995 -6.6047 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451128192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:02 Heat of formation + Delta-G solvation = -268.375442 kcal Electronic energy + Delta-G solvation = -31175.119293 eV Core-core repulsion = 26381.574630 eV Total energy + Delta-G solvation = -4793.544663 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.105 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.04915 -48.58146 -48.53087 -39.26806 -38.91284 -38.15544 -37.30917 -36.82346 -34.05940 -31.97399 -30.04947 -29.02942 -27.10380 -26.97017 -24.45042 -23.62291 -23.15970 -21.66650 -20.30949 -19.55080 -19.48484 -18.98927 -18.76231 -18.30386 -17.54769 -17.13221 -17.01189 -16.57184 -15.97592 -15.90871 -15.65596 -15.56411 -15.47978 -15.27239 -15.01787 -14.96424 -14.70818 -14.68667 -14.57918 -14.01411 -13.99347 -13.74750 -13.47614 -13.32942 -13.12841 -13.00805 -12.90209 -12.78400 -12.68721 -12.42827 -12.33107 -12.13135 -12.05468 -11.94393 -11.52195 -10.65390 -10.58717 -10.54785 -10.51595 -10.09914 -8.62827 -6.41102 -0.77620 1.52470 1.57911 1.58502 1.77656 1.80347 2.52695 2.75312 2.80797 2.91180 3.04443 3.04560 3.11582 3.15302 3.29191 3.54689 3.84447 3.94905 4.06074 4.12333 4.27548 4.33820 4.37907 4.38920 4.48658 4.59779 4.61570 4.64768 4.75996 4.82232 4.83825 4.93096 5.01201 5.22366 5.28293 5.41707 6.00237 6.14515 6.18150 6.63938 7.41023 8.79027 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.012932 B = 0.004802 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.694550 B = 5829.990250 C = 6472.173949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.396 6.396 3 C 0.039 3.961 4 C 0.104 3.896 5 N -0.992 5.992 6 C 0.086 3.914 7 C 0.427 3.573 8 F -0.184 7.184 9 F -0.179 7.179 10 F -0.190 7.190 11 S 2.613 3.387 12 O -0.972 6.972 13 O -0.978 6.978 14 C -0.556 4.556 15 C -0.014 4.014 16 C -0.607 4.607 17 H 0.037 0.963 18 C 0.002 3.998 19 N -0.914 5.914 20 Si 1.088 2.912 21 H -0.274 1.274 22 H -0.280 1.280 23 H -0.270 1.270 24 C -0.180 4.180 25 C -0.155 4.155 26 H 0.103 0.897 27 H 0.051 0.949 28 H 0.038 0.962 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.163 0.837 34 H 0.135 0.865 35 H 0.119 0.881 36 H 0.141 0.859 37 H 0.272 0.728 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.759 -13.443 9.407 16.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.316 6.316 3 C -0.040 4.040 4 C -0.020 4.020 5 N -0.826 5.826 6 C -0.042 4.042 7 C 0.370 3.630 8 F -0.166 7.166 9 F -0.161 7.161 10 F -0.172 7.172 11 S 2.711 3.289 12 O -0.962 6.962 13 O -0.969 6.969 14 C -0.689 4.689 15 C -0.016 4.016 16 C -0.644 4.644 17 H 0.056 0.944 18 C -0.201 4.201 19 N -0.549 5.549 20 Si 0.911 3.089 21 H -0.199 1.199 22 H -0.206 1.206 23 H -0.195 1.195 24 C -0.218 4.218 25 C -0.194 4.194 26 H 0.121 0.879 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.133 0.867 32 H 0.123 0.877 33 H 0.181 0.819 34 H 0.153 0.847 35 H 0.137 0.863 36 H 0.159 0.841 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.056 -11.710 9.544 15.413 hybrid contribution -0.174 -1.296 -0.359 1.356 sum -3.230 -13.006 9.185 16.247 Atomic orbital electron populations 1.22933 0.79819 1.03951 1.00546 1.87768 1.20984 1.27239 1.95572 1.23114 0.93265 0.85647 1.01934 1.21837 0.93183 1.00819 0.86195 1.57633 1.82515 1.14140 1.28341 1.22686 0.93551 0.81103 1.06851 1.21657 0.89299 0.75843 0.76181 1.93136 1.96779 1.91668 1.34971 1.93173 1.96953 1.30195 1.95752 1.93258 1.60352 1.85563 1.77983 1.04923 0.77381 0.72753 0.73827 1.93519 1.61430 1.68359 1.72915 1.93489 1.80237 1.47621 1.75510 1.30017 1.19650 1.08586 1.10616 1.18648 1.02713 0.94910 0.85347 1.21576 0.93747 0.92523 1.56575 0.94421 1.26753 0.95511 1.06292 0.91537 1.70855 1.11195 1.28471 1.44334 0.83312 0.75308 0.72423 0.77829 1.19872 1.20620 1.19524 1.23128 0.98028 0.98369 1.02229 1.22759 0.92882 1.01637 1.02150 0.87860 0.93064 0.94360 0.89596 0.93858 0.86696 0.87689 0.81910 0.84663 0.86289 0.84091 0.91741 0.90125 0.87663 0.88298 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 11.01 113.37 1.25 1.60 16 2 O -0.40 -7.67 9.02 -148.98 -1.34 -9.02 16 3 C 0.04 0.83 6.28 71.98 0.45 1.28 16 4 C 0.10 2.54 5.92 86.38 0.51 3.05 16 5 N -0.99 -28.00 2.60 -515.79 -1.34 -29.35 16 6 C 0.09 1.94 5.24 86.38 0.45 2.39 16 7 C 0.43 11.12 3.29 71.98 0.24 11.36 16 8 F -0.18 -4.69 15.70 44.97 0.71 -3.99 16 9 F -0.18 -4.25 17.32 44.97 0.78 -3.47 16 10 F -0.19 -6.41 15.32 44.97 0.69 -5.72 16 11 S 2.61 102.02 5.00 -56.49 -0.28 101.73 16 12 O -0.97 -40.86 15.13 -127.65 -1.93 -42.79 16 13 O -0.98 -46.37 16.04 -127.65 -2.05 -48.41 16 14 C -0.56 -21.14 5.95 71.98 0.43 -20.71 16 15 C -0.01 -0.64 0.95 -52.93 -0.05 -0.69 16 16 C -0.61 -33.21 7.90 25.60 0.20 -33.01 16 17 H 0.04 2.18 7.82 -2.91 -0.02 2.16 16 18 C 0.00 0.13 5.39 84.65 0.46 0.58 16 19 N -0.91 -50.87 13.57 21.45 0.29 -50.58 16 20 Si 1.09 50.11 29.91 68.60 2.05 52.16 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 C -0.18 -7.33 9.95 30.62 0.30 -7.03 16 25 C -0.16 -6.46 8.74 30.62 0.27 -6.19 16 26 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 28 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.04 1.07 7.10 -2.39 -0.02 1.05 16 31 H 0.11 2.34 6.73 -2.39 -0.02 2.33 16 32 H 0.11 2.87 6.82 -2.39 -0.02 2.86 16 33 H 0.16 2.69 6.60 -2.39 -0.02 2.67 16 34 H 0.14 2.67 7.61 -2.39 -0.02 2.65 16 35 H 0.12 4.68 6.78 -2.39 -0.02 4.67 16 36 H 0.14 4.10 8.11 -2.39 -0.02 4.08 16 37 H 0.27 14.63 6.17 -92.70 -0.57 14.06 16 38 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 39 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 40 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 41 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -70.78 360.41 3.33 -67.45 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 1.25 Total: 19.35 kcal Atomic # 6 Polarization: -51.88 SS G_CDS: 4.51 Total: -47.37 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -1.05 Total: -79.93 kcal Atomic # 8 Polarization: -94.90 SS G_CDS: -5.32 Total: -100.23 kcal Atomic # 9 Polarization: -15.35 SS G_CDS: 2.17 Total: -13.18 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 2.05 Total: 52.16 kcal Atomic # 16 Polarization: 102.02 SS G_CDS: -0.28 Total: 101.73 kcal Total: -70.78 3.33 -67.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451128192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.922 kcal (2) G-P(sol) polarization free energy of solvation -70.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -271.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -268.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds