Wall clock time and date at job start Wed Apr 1 2020 03:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47229 * 2 1 4 4 H 1.09004 * 109.46601 * 298.12681 * 3 2 1 5 5 N 1.46499 * 109.47099 * 58.11992 * 3 2 1 6 6 S 1.65592 * 120.00374 * 218.57614 * 5 3 2 7 7 O 1.42103 * 104.27947 * 177.77581 * 6 5 3 8 8 O 1.42098 * 104.27874 * 305.63042 * 6 5 3 9 9 C 1.81399 * 104.45278 * 61.70291 * 6 5 3 10 10 C 1.52993 * 109.47453 * 182.52659 * 9 6 5 11 11 C 1.50705 * 115.54608 * 66.25989 * 10 9 6 12 12 H 1.07996 * 120.00136 * 271.79854 * 11 10 9 13 13 C 1.37880 * 119.99927 * 91.81026 * 11 10 9 14 14 N 1.31512 * 119.99990 * 4.08709 * 13 11 10 15 15 Si 1.86798 * 119.99821 * 184.09199 * 13 11 10 16 16 H 1.48500 * 109.47478 * 89.99684 * 15 13 11 17 17 H 1.48507 * 109.46995 * 209.99327 * 15 13 11 18 18 H 1.48498 * 109.47172 * 329.99306 * 15 13 11 19 19 C 1.52998 * 117.50371 * 280.59172 * 10 9 6 20 20 C 1.52996 * 117.50069 * 211.92598 * 10 9 6 21 21 C 1.52995 * 109.47221 * 178.12594 * 3 2 1 22 22 H 1.09005 * 109.46854 * 185.77028 * 21 3 2 23 23 O 1.42896 * 109.47116 * 305.76700 * 21 3 2 24 24 C 1.52997 * 109.47326 * 65.77114 * 21 3 2 25 25 F 1.39896 * 109.47221 * 296.00440 * 24 21 3 26 26 F 1.39901 * 109.47210 * 56.00178 * 24 21 3 27 27 F 1.39897 * 109.47054 * 176.00255 * 24 21 3 28 28 H 1.09004 * 109.46766 * 304.70245 * 1 2 3 29 29 H 1.08993 * 109.47541 * 64.70009 * 1 2 3 30 30 H 1.09002 * 109.46739 * 184.70945 * 1 2 3 31 31 H 1.09004 * 109.46802 * 240.00436 * 2 1 3 32 32 H 1.08994 * 109.47435 * 120.00071 * 2 1 3 33 33 H 0.97003 * 119.99889 * 38.57919 * 5 3 2 34 34 H 1.09007 * 109.46794 * 302.53446 * 9 6 5 35 35 H 1.09005 * 109.46863 * 62.52498 * 9 6 5 36 36 H 0.97001 * 119.99762 * 185.01105 * 14 13 11 37 37 H 1.09000 * 117.49215 * 359.97438 * 19 10 9 38 38 H 1.08999 * 117.50200 * 145.01685 * 19 10 9 39 39 H 1.09004 * 117.50292 * 214.97975 * 20 10 9 40 40 H 1.09004 * 117.49650 * 359.97438 * 20 10 9 41 41 H 0.96706 * 113.99758 * 60.00558 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.7044 1.9465 -0.9064 5 7 1.5151 2.1460 1.1729 6 16 1.0409 3.7276 1.0462 7 8 0.5492 4.0507 2.3397 8 8 2.1756 4.3915 0.5069 9 6 -0.3131 3.6990 -0.1606 10 6 -0.8009 5.1268 -0.4138 11 6 0.1867 6.0401 -1.0933 12 1 0.8922 6.6068 -0.5039 13 6 0.1893 6.1523 -2.4676 14 7 -0.7210 5.5255 -3.1802 15 14 1.4859 7.1947 -3.3170 16 1 2.6688 6.3540 -3.6317 17 1 0.9266 7.7527 -4.5745 18 1 1.8929 8.3062 -2.4203 19 6 -1.7390 5.7473 0.6234 20 6 -2.2828 5.3193 -0.7420 21 6 3.5693 1.4427 0.0472 22 1 3.9294 2.4664 0.1505 23 8 4.0115 0.6673 1.1630 24 6 4.1195 0.8366 -1.2453 25 9 3.7325 -0.5049 -1.3330 26 9 3.6131 1.5406 -2.3431 27 9 5.5160 0.9198 -1.2418 28 1 -0.3633 0.5851 0.8449 29 1 -0.3634 0.4391 -0.9290 30 1 -0.3633 -1.0242 0.0844 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.4453 1.6855 2.0237 34 1 0.0425 3.2653 -1.0953 35 1 -1.1347 3.0981 0.2293 36 1 -0.6764 5.5447 -4.1490 37 1 -2.0089 5.1380 1.4860 38 1 -1.6422 6.8161 0.8141 39 1 -2.5436 6.1068 -1.4491 40 1 -2.9101 4.4286 -0.7780 41 1 3.7270 -0.2566 1.1374 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451362669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:41 Heat of formation + Delta-G solvation = -254.675426 kcal Electronic energy + Delta-G solvation = -31104.194504 eV Core-core repulsion = 26311.243918 eV Total energy + Delta-G solvation = -4792.950586 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.105 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.31798 -47.86619 -47.69534 -38.95032 -36.80380 -36.40785 -35.53846 -35.22967 -32.03302 -31.75972 -30.07874 -28.34059 -25.80015 -25.46355 -23.22093 -21.28514 -21.20175 -19.95322 -19.12434 -18.77877 -18.59128 -18.38261 -17.27608 -16.71776 -16.31098 -15.97385 -15.23288 -15.17653 -14.91445 -14.76680 -14.56826 -14.48150 -14.21955 -14.02951 -13.87223 -13.86037 -13.76132 -13.62728 -13.18430 -12.96046 -12.28488 -12.08887 -11.90034 -11.82755 -11.63969 -11.46328 -11.33069 -11.26962 -11.08378 -10.99652 -10.91988 -10.74908 -10.63387 -10.46941 -10.13127 -9.74376 -9.41050 -9.12901 -8.51076 -8.13315 -6.15359 -4.26370 0.86775 2.45606 3.17247 3.30136 3.36130 3.42162 3.49029 3.58613 3.77223 4.21359 4.27547 4.33453 4.36426 4.54249 4.69581 4.86029 5.03566 5.10814 5.17511 5.22543 5.32451 5.43889 5.56624 5.75470 5.76474 5.82607 5.99315 6.10543 6.20197 6.31778 6.54967 6.70334 6.95381 6.97688 7.06290 7.19605 7.49343 7.78990 8.17496 8.81057 9.44483 10.91299 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.011633 B = 0.005199 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.441525 B = 5383.921607 C = 6474.080359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.155 4.155 3 C 0.123 3.877 4 H 0.111 0.889 5 N -1.113 6.113 6 S 2.599 3.401 7 O -0.970 6.970 8 O -0.945 6.945 9 C -0.553 4.553 10 C 0.033 3.967 11 C -0.508 4.508 12 H 0.071 0.929 13 C 0.079 3.921 14 N -0.875 5.875 15 Si 0.889 3.111 16 H -0.274 1.274 17 H -0.287 1.287 18 H -0.270 1.270 19 C -0.216 4.216 20 C -0.124 4.124 21 C 0.054 3.946 22 H 0.160 0.840 23 O -0.523 6.523 24 C 0.421 3.579 25 F -0.182 7.182 26 F -0.170 7.170 27 F -0.176 7.176 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.415 0.585 34 H 0.127 0.873 35 H 0.104 0.896 36 H 0.262 0.738 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.064 0.936 41 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.041 -14.583 4.526 15.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.193 4.193 3 C 0.013 3.987 4 H 0.129 0.871 5 N -0.868 5.868 6 S 2.696 3.304 7 O -0.961 6.961 8 O -0.934 6.934 9 C -0.687 4.687 10 C 0.030 3.970 11 C -0.545 4.545 12 H 0.089 0.911 13 C -0.125 4.125 14 N -0.511 5.511 15 Si 0.716 3.284 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.194 1.194 19 C -0.254 4.254 20 C -0.163 4.163 21 C -0.009 4.009 22 H 0.177 0.823 23 O -0.329 6.329 24 C 0.366 3.634 25 F -0.164 7.164 26 F -0.152 7.152 27 F -0.157 7.157 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.248 0.752 34 H 0.145 0.855 35 H 0.122 0.878 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.082 0.918 41 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 4.650 -13.205 4.816 14.805 hybrid contribution 0.093 -0.814 -1.163 1.423 sum 4.743 -14.019 3.652 15.244 Atomic orbital electron populations 1.21765 0.94080 1.02170 1.03079 1.22262 0.98423 0.94498 1.04125 1.21346 0.90633 0.96116 0.90593 0.87111 1.55966 1.79868 1.33840 1.17122 1.05499 0.77189 0.71776 0.75918 1.93527 1.82709 1.81534 1.38290 1.93553 1.47965 1.71106 1.80788 1.30032 1.15869 1.07325 1.15429 1.18336 0.91825 0.87905 0.98893 1.20559 1.16796 1.25542 0.91631 0.91132 1.24946 0.94972 0.95247 0.97376 1.70022 1.32187 1.42829 1.06053 0.86612 0.81921 0.80998 0.78858 1.19997 1.21242 1.19410 1.23295 1.08464 1.00898 0.92734 1.22487 0.96456 1.01481 0.95915 1.23986 0.96297 0.98875 0.81784 0.82315 1.86742 1.77889 1.26150 1.42101 1.21630 0.76763 0.76567 0.88476 1.93080 1.90235 1.36257 1.96791 1.93260 1.86821 1.78283 1.56817 1.93211 1.29750 1.95915 1.96824 0.91976 0.91837 0.92179 0.88776 0.90779 0.75152 0.85507 0.87751 0.92815 0.90820 0.89491 0.88713 0.91760 0.77099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.81 37.16 0.36 -1.01 16 2 C -0.15 -1.33 4.63 -26.73 -0.12 -1.45 16 3 C 0.12 1.44 1.98 -67.93 -0.13 1.31 16 4 H 0.11 1.42 6.28 -51.93 -0.33 1.09 16 5 N -1.11 -14.45 4.36 -4.89 -0.02 -14.47 16 6 S 2.60 47.96 5.23 -107.50 -0.56 47.39 16 7 O -0.97 -19.92 18.08 -57.54 -1.04 -20.96 16 8 O -0.94 -20.64 16.75 -57.54 -0.96 -21.61 16 9 C -0.55 -10.59 5.77 37.15 0.21 -10.38 16 10 C 0.03 0.77 1.53 -155.66 -0.24 0.53 16 11 C -0.51 -13.47 7.92 -34.44 -0.27 -13.75 16 12 H 0.07 1.94 7.82 -52.49 -0.41 1.53 16 13 C 0.08 2.10 5.41 -17.82 -0.10 2.00 16 14 N -0.88 -23.37 12.08 55.43 0.67 -22.70 16 15 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 C -0.22 -4.66 9.96 -26.69 -0.27 -4.92 16 20 C -0.12 -2.77 8.89 -26.69 -0.24 -3.01 16 21 C 0.05 0.65 3.08 -26.73 -0.08 0.57 16 22 H 0.16 2.21 7.76 -51.93 -0.40 1.80 16 23 O -0.52 -5.43 13.16 -35.23 -0.46 -5.89 16 24 C 0.42 5.07 2.83 37.16 0.11 5.17 16 25 F -0.18 -1.84 13.63 2.25 0.03 -1.81 16 26 F -0.17 -2.38 16.54 2.25 0.04 -2.35 16 27 F -0.18 -2.28 17.30 2.25 0.04 -2.24 16 28 H 0.06 0.57 7.40 -51.93 -0.38 0.18 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.78 5.52 -51.93 -0.29 0.49 16 32 H 0.07 0.48 6.61 -51.93 -0.34 0.13 16 33 H 0.41 4.44 8.84 -34.46 -0.30 4.13 16 34 H 0.13 2.40 7.22 -51.92 -0.37 2.03 16 35 H 0.10 1.67 8.08 -51.92 -0.42 1.25 16 36 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 37 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.09 1.87 8.14 -51.93 -0.42 1.44 16 39 H 0.09 2.30 7.78 -51.93 -0.40 1.89 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.38 2.52 6.67 45.56 0.30 2.82 16 LS Contribution 358.80 15.07 5.41 5.41 Total: -1.00 -31.89 358.80 -7.26 -39.15 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -4.60 Total: 8.91 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -0.77 Total: -24.94 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.65 Total: -37.17 kcal Atomic # 8 Polarization: -45.99 SS G_CDS: -2.47 Total: -48.45 kcal Atomic # 9 Polarization: -6.50 SS G_CDS: 0.11 Total: -6.40 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 47.96 SS G_CDS: -0.56 Total: 47.39 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.89 -7.26 -39.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451362669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -215.525 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -254.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds