Wall clock time and date at job start Wed Apr 1 2020 03:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47466 * 2 1 4 4 H 1.09002 * 109.46966 * 54.99799 * 3 2 1 5 5 N 1.46493 * 109.47079 * 294.99882 * 3 2 1 6 6 C 1.34783 * 120.00266 * 84.99728 * 5 3 2 7 7 O 1.21554 * 119.99505 * 0.02562 * 6 5 3 8 8 C 1.47857 * 120.00551 * 180.02562 * 6 5 3 9 9 C 1.39683 * 120.10031 * 0.02562 * 8 6 5 10 10 C 1.38039 * 120.04013 * 179.97438 * 9 8 6 11 11 C 1.38176 * 120.24026 * 359.67736 * 10 9 8 12 12 C 1.39179 * 120.20540 * 0.59964 * 11 10 9 13 13 S 1.76194 * 120.02163 * 179.69520 * 12 11 10 14 14 C 1.76206 * 100.00127 * 265.25129 * 13 12 11 15 15 H 1.07994 * 120.00039 * 5.12620 * 14 13 12 16 16 C 1.38732 * 119.99565 * 185.12088 * 14 13 12 17 17 N 1.31616 * 120.00319 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99299 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46950 * 90.00218 * 18 16 14 20 20 H 1.48495 * 109.46650 * 209.99977 * 18 16 14 21 21 H 1.48498 * 109.47335 * 329.99858 * 18 16 14 22 22 C 1.38875 * 119.95687 * 359.42658 * 12 11 10 23 23 C 1.52997 * 109.47156 * 174.99920 * 3 2 1 24 24 H 1.09006 * 109.46957 * 174.99779 * 23 3 2 25 25 O 1.42909 * 109.47280 * 55.00017 * 23 3 2 26 26 C 1.53001 * 109.47178 * 295.00025 * 23 3 2 27 27 F 1.39894 * 109.47228 * 65.00333 * 26 23 3 28 28 F 1.39902 * 109.46924 * 185.00312 * 26 23 3 29 29 H 1.09003 * 109.47026 * 59.99788 * 1 2 3 30 30 H 1.08998 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47248 * 300.00557 * 1 2 3 32 32 H 1.09003 * 109.47248 * 239.99443 * 2 1 3 33 33 H 1.09003 * 109.47026 * 120.00212 * 2 1 3 34 34 H 0.97000 * 120.00523 * 265.00431 * 5 3 2 35 35 H 1.08002 * 119.97685 * 359.97438 * 9 8 6 36 36 H 1.07999 * 119.87763 * 179.97438 * 10 9 8 37 37 H 1.08006 * 119.89818 * 180.31426 * 11 10 9 38 38 H 0.97004 * 119.99833 * 179.97438 * 17 16 14 39 39 H 1.07994 * 120.12344 * 180.29777 * 22 12 11 40 40 H 0.96703 * 113.99362 * 300.00245 * 25 23 3 41 41 H 1.08996 * 109.47003 * 304.99547 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0974 -1.2518 6 6 0.4352 2.6644 -1.3670 7 8 -0.3409 2.6326 -0.4321 8 6 0.0438 3.3250 -2.6306 9 6 0.9339 3.3622 -3.7065 10 6 0.5670 3.9788 -4.8858 11 6 -0.6826 4.5554 -5.0102 12 6 -1.5752 4.5292 -3.9427 13 16 -3.1643 5.2729 -4.1039 14 6 -2.8287 6.8628 -3.4224 15 1 -1.8205 7.1271 -3.1393 16 6 -3.8595 7.7750 -3.2496 17 7 -5.0880 7.4532 -3.5951 18 14 -3.5034 9.4608 -2.5278 19 1 -3.1801 10.4100 -3.6230 20 1 -4.6972 9.9452 -1.7893 21 1 -2.3500 9.3673 -1.5971 22 6 -1.2147 3.9115 -2.7522 23 6 3.5648 1.4442 0.1257 24 1 3.9356 2.4654 0.0366 25 8 4.1293 0.6402 -0.9121 26 6 3.9649 0.8734 1.4877 27 9 3.5894 -0.4724 1.5579 28 9 5.3505 0.9800 1.6492 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.2720 2.1230 -1.9978 35 1 1.9096 2.9083 -3.6156 36 1 1.2573 4.0064 -5.7159 37 1 -0.9657 5.0319 -5.9371 38 1 -5.8088 8.0909 -3.4739 39 1 -1.9070 3.8854 -1.9238 40 1 3.8426 -0.2832 -0.8943 41 1 3.4631 1.4324 2.2775 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452476296.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:52 Heat of formation + Delta-G solvation = -168.325076 kcal Electronic energy + Delta-G solvation = -27606.800171 eV Core-core repulsion = 23248.363242 eV Total energy + Delta-G solvation = -4358.436929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.60316 -47.59033 -40.46787 -38.65486 -37.61980 -35.11838 -32.82211 -32.52972 -30.90157 -30.64314 -30.29569 -26.30003 -25.59223 -23.69559 -23.24030 -22.33690 -21.14074 -20.47293 -18.62464 -18.39943 -18.18486 -17.71446 -17.36773 -16.43576 -16.01017 -15.75372 -15.53285 -15.16891 -14.98078 -14.86982 -14.38964 -14.34142 -14.23392 -13.81629 -13.68837 -13.44582 -13.29975 -13.03318 -12.92440 -12.76215 -12.35071 -12.19616 -11.73750 -11.62001 -11.34314 -11.18574 -11.15407 -11.10160 -10.94586 -10.73320 -10.61244 -9.99998 -9.81567 -9.24362 -9.18739 -9.04726 -8.63221 -8.05755 -6.73848 -6.30788 -4.04947 1.11338 1.63284 2.62870 2.96230 3.17763 3.20493 3.26269 3.34114 3.44049 3.51360 3.65994 3.74942 4.05180 4.11097 4.23068 4.37547 4.54844 4.70655 4.82517 5.02267 5.05093 5.06907 5.19518 5.23849 5.36560 5.45107 5.62115 5.70063 5.81866 5.83738 5.93689 5.95382 6.21207 6.22815 6.33934 6.53914 6.60778 6.82582 6.89605 7.15109 7.38900 7.55276 8.19392 8.30389 9.15062 10.75955 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.002413 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.628786 B =11602.712295 C =11931.024918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.163 4.163 3 C 0.117 3.883 4 H 0.104 0.896 5 N -0.722 5.722 6 C 0.567 3.433 7 O -0.527 6.527 8 C -0.156 4.156 9 C -0.089 4.089 10 C -0.141 4.141 11 C -0.054 4.054 12 C -0.107 4.107 13 S -0.035 6.035 14 C -0.520 4.520 15 H 0.076 0.924 16 C 0.073 3.927 17 N -0.870 5.870 18 Si 0.921 3.079 19 H -0.276 1.276 20 H -0.281 1.281 21 H -0.271 1.271 22 C -0.018 4.018 23 C 0.054 3.946 24 H 0.136 0.864 25 O -0.541 6.541 26 C 0.235 3.765 27 F -0.195 7.195 28 F -0.195 7.195 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.404 0.596 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.131 0.869 38 H 0.270 0.730 39 H 0.139 0.861 40 H 0.384 0.616 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.537 -14.363 6.188 24.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.201 4.201 3 C 0.011 3.989 4 H 0.121 0.879 5 N -0.376 5.376 6 C 0.356 3.644 7 O -0.404 6.404 8 C -0.161 4.161 9 C -0.108 4.108 10 C -0.161 4.161 11 C -0.075 4.075 12 C -0.217 4.217 13 S 0.200 5.800 14 C -0.667 4.667 15 H 0.094 0.906 16 C -0.136 4.136 17 N -0.505 5.505 18 Si 0.747 3.253 19 H -0.202 1.202 20 H -0.206 1.206 21 H -0.196 1.196 22 C -0.040 4.040 23 C -0.007 4.007 24 H 0.153 0.847 25 O -0.348 6.348 26 C 0.181 3.819 27 F -0.176 7.176 28 F -0.176 7.176 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.241 0.759 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.080 0.920 39 H 0.157 0.843 40 H 0.234 0.766 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 17.042 -14.194 6.276 23.050 hybrid contribution 1.509 0.932 0.748 1.924 sum 18.551 -13.262 7.024 23.861 Atomic orbital electron populations 1.21757 0.93872 1.00883 1.03526 1.22457 0.98593 0.95206 1.03859 1.21532 0.92285 0.95335 0.89779 0.87851 1.45763 1.17289 1.58575 1.15988 1.18369 0.80972 0.77273 0.87811 1.90787 1.50934 1.58618 1.40020 1.19824 0.96918 1.05462 0.93905 1.21159 0.98025 0.98571 0.93084 1.21066 0.97102 1.00270 0.97615 1.21976 0.92075 0.94782 0.98717 1.22854 1.03167 1.00944 0.94776 1.83622 1.02073 1.13443 1.80913 1.22829 0.97235 0.97768 1.48876 0.90633 1.25003 0.94356 0.99209 0.94997 1.69983 0.99706 1.35870 1.44974 0.86120 0.78149 0.81927 0.79128 1.20152 1.20638 1.19572 1.21942 0.93804 0.90942 0.97268 1.23410 0.93717 0.97792 0.85750 0.84673 1.86632 1.71732 1.25645 1.50775 1.22629 0.78027 0.80166 1.01097 1.92870 1.90246 1.37003 1.97473 1.93028 1.31939 1.95908 1.96719 0.92155 0.93343 0.91988 0.91574 0.88654 0.75918 0.86462 0.85831 0.85060 0.92032 0.84316 0.76619 0.86058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.51 37.15 0.32 -1.26 16 2 C -0.16 -1.30 4.66 -26.73 -0.12 -1.43 16 3 C 0.12 0.94 2.13 -67.94 -0.14 0.80 16 4 H 0.10 0.92 7.58 -51.93 -0.39 0.53 16 5 N -0.72 -7.27 4.96 -54.75 -0.27 -7.55 16 6 C 0.57 8.21 6.34 -12.32 -0.08 8.13 16 7 O -0.53 -9.16 13.48 5.32 0.07 -9.09 16 8 C -0.16 -2.49 5.87 -105.00 -0.62 -3.11 16 9 C -0.09 -1.18 9.54 -39.12 -0.37 -1.55 16 10 C -0.14 -1.96 10.02 -39.68 -0.40 -2.36 16 11 C -0.05 -0.95 9.79 -39.25 -0.38 -1.34 16 12 C -0.11 -2.23 5.45 -39.00 -0.21 -2.44 16 13 S -0.03 -0.89 21.41 -107.50 -2.30 -3.19 16 14 C -0.52 -14.51 9.46 30.91 0.29 -14.22 16 15 H 0.08 2.09 7.79 -52.49 -0.41 1.68 16 16 C 0.07 2.04 5.49 -17.46 -0.10 1.95 16 17 N -0.87 -25.27 13.22 55.49 0.73 -24.54 16 18 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 22 C -0.02 -0.35 9.34 -38.92 -0.36 -0.71 16 23 C 0.05 0.34 3.17 -26.73 -0.08 0.26 16 24 H 0.14 0.77 8.14 -51.93 -0.42 0.35 16 25 O -0.54 -3.80 12.96 -35.23 -0.46 -4.25 16 26 C 0.24 1.37 4.95 37.16 0.18 1.56 16 27 F -0.19 -1.32 13.54 2.25 0.03 -1.29 16 28 F -0.19 -1.60 17.33 2.25 0.04 -1.56 16 29 H 0.06 0.82 5.65 -51.93 -0.29 0.52 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.75 7.84 -51.93 -0.41 0.34 16 32 H 0.07 0.48 7.00 -51.93 -0.36 0.11 16 33 H 0.10 0.66 5.10 -51.93 -0.27 0.40 16 34 H 0.40 3.41 6.41 -40.82 -0.26 3.15 16 35 H 0.12 1.11 6.40 -52.49 -0.34 0.77 16 36 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.13 2.19 8.06 -52.48 -0.42 1.77 16 38 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.14 2.95 7.65 -52.49 -0.40 2.55 16 40 H 0.38 1.95 6.82 45.56 0.31 2.26 16 41 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 359.60 15.07 5.42 5.42 Total: -1.00 -32.87 359.60 -7.91 -40.78 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -4.07 Total: 4.77 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -2.08 Total: -15.73 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.46 Total: -32.08 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.39 Total: -13.34 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.07 Total: -2.85 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -2.30 Total: -3.19 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.87 -7.91 -40.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452476296.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.546 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds