Wall clock time and date at job start Wed Apr 1 2020 03:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47466 * 2 1 4 4 H 1.09002 * 109.46966 * 54.99799 * 3 2 1 5 5 N 1.46493 * 109.47079 * 294.99882 * 3 2 1 6 6 C 1.34783 * 120.00266 * 84.99728 * 5 3 2 7 7 O 1.21554 * 119.99505 * 0.02562 * 6 5 3 8 8 C 1.47857 * 120.00551 * 180.02562 * 6 5 3 9 9 C 1.39683 * 120.10031 * 0.02562 * 8 6 5 10 10 C 1.38039 * 120.04013 * 179.97438 * 9 8 6 11 11 C 1.38176 * 120.24026 * 359.67736 * 10 9 8 12 12 C 1.39179 * 120.20540 * 0.59964 * 11 10 9 13 13 S 1.76194 * 120.02163 * 179.69520 * 12 11 10 14 14 C 1.76206 * 100.00127 * 265.25129 * 13 12 11 15 15 H 1.07994 * 120.00039 * 5.12620 * 14 13 12 16 16 C 1.38732 * 119.99565 * 185.12088 * 14 13 12 17 17 N 1.31616 * 120.00319 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99299 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46950 * 90.00218 * 18 16 14 20 20 H 1.48495 * 109.46650 * 209.99977 * 18 16 14 21 21 H 1.48498 * 109.47335 * 329.99858 * 18 16 14 22 22 C 1.38875 * 119.95687 * 359.42658 * 12 11 10 23 23 C 1.52997 * 109.47156 * 174.99920 * 3 2 1 24 24 H 1.09006 * 109.46957 * 174.99779 * 23 3 2 25 25 O 1.42909 * 109.47280 * 55.00017 * 23 3 2 26 26 C 1.53001 * 109.47178 * 295.00025 * 23 3 2 27 27 F 1.39894 * 109.47228 * 65.00333 * 26 23 3 28 28 F 1.39902 * 109.46924 * 185.00312 * 26 23 3 29 29 H 1.09003 * 109.47026 * 59.99788 * 1 2 3 30 30 H 1.08998 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47248 * 300.00557 * 1 2 3 32 32 H 1.09003 * 109.47248 * 239.99443 * 2 1 3 33 33 H 1.09003 * 109.47026 * 120.00212 * 2 1 3 34 34 H 0.97000 * 120.00523 * 265.00431 * 5 3 2 35 35 H 1.08002 * 119.97685 * 359.97438 * 9 8 6 36 36 H 1.07999 * 119.87763 * 179.97438 * 10 9 8 37 37 H 1.08006 * 119.89818 * 180.31426 * 11 10 9 38 38 H 0.97004 * 119.99833 * 179.97438 * 17 16 14 39 39 H 1.07994 * 120.12344 * 180.29777 * 22 12 11 40 40 H 0.96703 * 113.99362 * 300.00245 * 25 23 3 41 41 H 1.08996 * 109.47003 * 304.99547 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0974 -1.2518 6 6 0.4352 2.6644 -1.3670 7 8 -0.3409 2.6326 -0.4321 8 6 0.0438 3.3250 -2.6306 9 6 0.9339 3.3622 -3.7065 10 6 0.5670 3.9788 -4.8858 11 6 -0.6826 4.5554 -5.0102 12 6 -1.5752 4.5292 -3.9427 13 16 -3.1643 5.2729 -4.1039 14 6 -2.8287 6.8628 -3.4224 15 1 -1.8205 7.1271 -3.1393 16 6 -3.8595 7.7750 -3.2496 17 7 -5.0880 7.4532 -3.5951 18 14 -3.5034 9.4608 -2.5278 19 1 -3.1801 10.4100 -3.6230 20 1 -4.6972 9.9452 -1.7893 21 1 -2.3500 9.3673 -1.5971 22 6 -1.2147 3.9115 -2.7522 23 6 3.5648 1.4442 0.1257 24 1 3.9356 2.4654 0.0366 25 8 4.1293 0.6402 -0.9121 26 6 3.9649 0.8734 1.4877 27 9 3.5894 -0.4724 1.5579 28 9 5.3505 0.9800 1.6492 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.2720 2.1230 -1.9978 35 1 1.9096 2.9083 -3.6156 36 1 1.2573 4.0064 -5.7159 37 1 -0.9657 5.0319 -5.9371 38 1 -5.8088 8.0909 -3.4739 39 1 -1.9070 3.8854 -1.9238 40 1 3.8426 -0.2832 -0.8943 41 1 3.4631 1.4324 2.2775 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452476296.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:51 Heat of formation + Delta-G solvation = -191.503545 kcal Electronic energy + Delta-G solvation = -27607.805265 eV Core-core repulsion = 23248.363242 eV Total energy + Delta-G solvation = -4359.442023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.09669 -48.10334 -41.51095 -39.64660 -38.61826 -35.92366 -34.65968 -33.79897 -31.99643 -31.82139 -31.14049 -27.75208 -27.06049 -24.83888 -23.85597 -23.63812 -21.97795 -21.53937 -20.03680 -19.21223 -18.93137 -18.65442 -18.16135 -17.46168 -16.94014 -16.90649 -16.68448 -16.60413 -16.34498 -15.68701 -15.60235 -15.27983 -15.04710 -14.80812 -14.67461 -14.59078 -14.29326 -14.11009 -13.85350 -13.58692 -13.39748 -13.23544 -13.08279 -12.97067 -12.93755 -12.66295 -12.42351 -12.37961 -11.94435 -11.74673 -11.71015 -11.27824 -11.22349 -10.98303 -10.72928 -10.20608 -9.90643 -9.69691 -8.81235 -8.39768 -6.19912 -0.17590 0.25960 1.29232 1.37080 1.45799 1.63796 1.79146 1.87844 2.23847 2.75592 2.81604 2.93365 3.04454 3.18969 3.23288 3.41484 3.58441 3.70912 3.88968 3.94346 4.01473 4.02637 4.08631 4.35096 4.39639 4.49000 4.56695 4.59367 4.70634 4.90220 4.92924 5.03013 5.09258 5.22035 5.32652 5.37942 5.38386 5.43473 5.50920 5.86270 6.15193 6.42131 6.45472 7.00594 7.14781 8.67342 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.002413 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.628786 B =11602.712295 C =11931.024918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.156 4.156 3 C 0.115 3.885 4 H 0.096 0.904 5 N -0.700 5.700 6 C 0.567 3.433 7 O -0.564 6.564 8 C -0.157 4.157 9 C -0.064 4.064 10 C -0.122 4.122 11 C -0.064 4.064 12 C -0.129 4.129 13 S -0.097 6.097 14 C -0.535 4.535 15 H 0.067 0.933 16 C 0.019 3.981 17 N -0.907 5.907 18 Si 0.992 3.008 19 H -0.262 1.262 20 H -0.273 1.273 21 H -0.268 1.268 22 C -0.043 4.043 23 C 0.067 3.933 24 H 0.146 0.854 25 O -0.549 6.549 26 C 0.233 3.767 27 F -0.200 7.200 28 F -0.207 7.207 29 H 0.031 0.969 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.416 0.584 35 H 0.171 0.829 36 H 0.173 0.827 37 H 0.133 0.867 38 H 0.274 0.726 39 H 0.104 0.896 40 H 0.392 0.608 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.639 -14.907 6.109 27.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.194 4.194 3 C 0.010 3.990 4 H 0.114 0.886 5 N -0.353 5.353 6 C 0.355 3.645 7 O -0.444 6.444 8 C -0.162 4.162 9 C -0.083 4.083 10 C -0.141 4.141 11 C -0.085 4.085 12 C -0.240 4.240 13 S 0.137 5.863 14 C -0.682 4.682 15 H 0.086 0.914 16 C -0.186 4.186 17 N -0.543 5.543 18 Si 0.814 3.186 19 H -0.187 1.187 20 H -0.197 1.197 21 H -0.192 1.192 22 C -0.065 4.065 23 C 0.006 3.994 24 H 0.164 0.836 25 O -0.358 6.358 26 C 0.179 3.821 27 F -0.181 7.181 28 F -0.189 7.189 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.129 0.871 34 H 0.255 0.745 35 H 0.188 0.812 36 H 0.191 0.809 37 H 0.151 0.849 38 H 0.083 0.917 39 H 0.122 0.878 40 H 0.244 0.756 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 21.188 -14.772 6.178 26.558 hybrid contribution 0.363 0.924 0.758 1.249 sum 21.551 -13.849 6.936 26.539 Atomic orbital electron populations 1.21711 0.96310 1.00656 1.01256 1.22432 0.96124 0.95401 1.05408 1.21657 0.93883 0.95021 0.88441 0.88592 1.45555 1.15644 1.56972 1.17151 1.18200 0.81988 0.77472 0.86819 1.90781 1.52391 1.60150 1.41057 1.19987 0.95753 1.04687 0.95768 1.21709 0.99084 0.96246 0.91226 1.21537 0.95711 0.97723 0.99161 1.22064 0.93220 0.95576 0.97650 1.22490 1.01434 1.03139 0.96937 1.83507 1.07788 1.13813 1.81156 1.23052 0.97076 0.99061 1.49007 0.91448 1.26012 0.94017 1.03378 0.95185 1.70108 1.00691 1.37421 1.46092 0.85042 0.78173 0.76800 0.78584 1.18728 1.19749 1.19217 1.21619 0.95461 0.93345 0.96091 1.23306 0.91686 0.98444 0.85999 0.83629 1.86621 1.71783 1.26396 1.50955 1.22871 0.77436 0.80066 1.01738 1.92853 1.90190 1.37581 1.97510 1.93005 1.33141 1.95958 1.96770 0.94965 0.92517 0.93751 0.90043 0.87077 0.74471 0.81187 0.80944 0.84875 0.91700 0.87818 0.75635 0.83284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.51 71.98 0.61 -2.45 16 2 C -0.16 -2.13 4.66 30.59 0.14 -1.98 16 3 C 0.12 1.57 2.13 44.99 0.10 1.67 16 4 H 0.10 1.55 7.58 -2.39 -0.02 1.53 16 5 N -0.70 -12.11 4.96 -445.40 -2.21 -14.32 16 6 C 0.57 15.94 6.34 86.79 0.55 16.49 16 7 O -0.56 -20.25 13.48 -3.89 -0.05 -20.30 16 8 C -0.16 -4.85 5.87 -20.11 -0.12 -4.97 16 9 C -0.06 -1.42 9.54 22.57 0.22 -1.21 16 10 C -0.12 -2.91 10.02 22.21 0.22 -2.69 16 11 C -0.06 -2.21 9.79 22.48 0.22 -1.99 16 12 C -0.13 -5.62 5.45 22.65 0.12 -5.50 16 13 S -0.10 -5.31 21.41 -56.49 -1.21 -6.52 16 14 C -0.53 -31.29 9.46 67.94 0.64 -30.65 16 15 H 0.07 3.90 7.79 -2.91 -0.02 3.87 16 16 C 0.02 1.10 5.49 84.84 0.47 1.57 16 17 N -0.91 -54.70 13.22 21.64 0.29 -54.41 16 18 Si 0.99 44.42 29.55 68.60 2.03 46.45 16 19 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 C -0.04 -1.79 9.34 22.70 0.21 -1.58 16 23 C 0.07 0.60 3.17 30.59 0.10 0.70 16 24 H 0.15 1.08 8.14 -2.38 -0.02 1.06 16 25 O -0.55 -5.52 12.96 -148.98 -1.93 -7.45 16 26 C 0.23 1.99 4.95 71.98 0.36 2.35 16 27 F -0.20 -2.12 13.54 44.97 0.61 -1.52 16 28 F -0.21 -2.84 17.33 44.97 0.78 -2.06 16 29 H 0.03 0.87 5.65 -2.39 -0.01 0.86 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.04 1.09 7.84 -2.39 -0.02 1.07 16 32 H 0.08 0.89 7.00 -2.39 -0.02 0.88 16 33 H 0.11 1.24 5.10 -2.39 -0.01 1.22 16 34 H 0.42 5.07 6.41 -92.71 -0.59 4.48 16 35 H 0.17 2.03 6.40 -2.91 -0.02 2.01 16 36 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 37 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 38 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 39 H 0.10 4.90 7.65 -2.91 -0.02 4.88 16 40 H 0.39 2.45 6.82 -74.06 -0.51 1.95 16 41 H 0.15 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -78.14 359.60 2.14 -76.00 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.00 Total: 14.37 kcal Atomic # 6 Polarization: -34.08 SS G_CDS: 3.84 Total: -30.24 kcal Atomic # 7 Polarization: -66.81 SS G_CDS: -1.92 Total: -68.73 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -1.98 Total: -27.76 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 1.39 Total: -3.57 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: -5.31 SS G_CDS: -1.21 Total: -6.52 kcal Total: -78.14 2.14 -76.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452476296.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.500 kcal (2) G-P(sol) polarization free energy of solvation -78.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds